Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 224 87.5 2960670 99.3% 2939945 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,741,073 +A coding (78/1071 nt) aroF ← 3‑deoxy‑7‑phosphoheptulonate synthase, Tyr‑sensitive

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,741,0691.A100.0% 385.9 / NA 108P28S (CCA→TCA) aroF3‑deoxy‑7‑phosphoheptulonate synthase, Tyr‑sensitive
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base A (50/58);  total (50/58)

Only 100 of 108 total aligned reads displayed.

GAGCAGTTTCCGGATCATGAATGGAACAAGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGG‑AAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCGATAGTTGATCCTCAGCGAGGA  >  NC_000913/2740940‑2741200
                                                                                                                                  |                                                                                                                                   
gagCAGTTTCCGGATCATGAATGGAACAAGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGc                                                                                                                            >  1:1204682/1‑140 (MQ=255)
 agCAGTTTCCGGATCATGAATGGAACAAGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGcc                                                                                                                           >  2:1471929/1‑140 (MQ=255)
   cAGTTTCCGGATCATGAATGGAACAAGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCtt                                                                                                                         >  1:432552/1‑140 (MQ=255)
    aGTTTCCGGATAATGAATGGAACAAGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCt                                                                                                                          >  2:627734/1‑138 (MQ=255)
    aGTTTCCGGATAATGAATGGAACAAGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCt                                                                                                                          <  1:627734/138‑1 (MQ=255)
      tttCCGGATCATGAATGGAACAAGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAg                                                                                                                      <  1:430401/140‑1 (MQ=255)
      tttCCGGATCATGAATGGAACAAGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAg                                                                                                                      >  1:568439/1‑140 (MQ=255)
      tttCCGGATCATGAATGGAACAAGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAg                                                                                                                      >  2:1232613/1‑140 (MQ=255)
           ggATCATGAATGGAACAAGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAgttgtt                                                                                                                 >  2:551149/1‑140 (MQ=255)
                aTGAATGGAACAAGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGa                                                                                                            <  2:575577/140‑1 (MQ=255)
                aTGAATGGAACAACGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGa                                                                                                            <  1:551149/140‑1 (MQ=255)
                 tGAATGGAACAAGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAg                                                                                                           <  2:710751/140‑1 (MQ=255)
                       gAACAAGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTa                                                                                                     >  1:1025595/1‑140 (MQ=255)
                        aaCAAGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTaa                                                                                                    >  1:646803/1‑140 (MQ=255)
                         aCAAGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTaaa                                                                                                   <  2:1025595/140‑1 (MQ=255)
                         aCAAGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTaaa                                                                                                   >  2:28918/1‑140 (MQ=255)
                           aaGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAAc                                                                                                 >  2:5756/1‑140 (MQ=255)
                             ggACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCt                                                                                               >  2:1132300/1‑140 (MQ=255)
                             ggACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCt                                                                                               <  2:1101375/140‑1 (MQ=255)
                             ggACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAA‑CTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTg                                                                                              >  1:44930/1‑140 (MQ=255)
                                  acaTACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTtcg                                                                                          >  1:973495/1‑140 (MQ=255)
                                  acaTACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTtcg                                                                                          <  1:1409049/140‑1 (MQ=255)
                                  acaTACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGGCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTtcg                                                                                          >  2:681110/1‑140 (MQ=255)
                                   caTACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTtcgt                                                                                         >  2:94582/1‑140 (MQ=255)
                                   caTACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTtcgt                                                                                         <  2:432552/140‑1 (MQ=255)
                                     tactacCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTtcgtcg                                                                                       <  1:729603/140‑1 (MQ=255)
                                      actacCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCgg                                                                                      <  1:1467186/140‑1 (MQ=255)
                                      actacCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCgg                                                                                      <  2:829349/140‑1 (MQ=255)
                                      actacCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCgg                                                                                      >  1:1045378/1‑140 (MQ=255)
                                       ctacCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGt                                                                                     <  1:28918/140‑1 (MQ=255)
                                       ctacCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGt                                                                                     <  1:840960/140‑1 (MQ=255)
                                       ctacCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGCCGGt                                                                                     <  2:646803/140‑1 (MQ=255)
                                        tacCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTtcg                                                                                          <  2:1166238/134‑1 (MQ=255)
                                        tacCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTtcg                                                                                          >  1:1166238/1‑134 (MQ=255)
                                        tacCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTa                                                                                    <  1:94582/140‑1 (MQ=255)
                                         acCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTaa                                                                                   >  1:526758/1‑140 (MQ=255)
                                          ccAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAat                                                                                  <  2:226929/140‑1 (MQ=255)
                                           cagcagACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAata                                                                                 <  1:1232613/140‑1 (MQ=255)
                                           cagcagACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTGCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAata                                                                                 >  2:1305741/1‑140 (MQ=255)
                                            agcagACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAatat                                                                                <  2:500071/140‑1 (MQ=255)
                                            agcagACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAatat                                                                                <  1:1223000/140‑1 (MQ=255)
                                            agcagACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAatat                                                                                <  2:804104/140‑1 (MQ=255)
                                             gcagACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATg                                                                               >  1:1053502/1‑140 (MQ=255)
                                              cagACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGt                                                                                     <  1:825556/133‑1 (MQ=255)
                                              cagACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGt                                                                                     <  1:1305645/133‑1 (MQ=255)
                                              cagACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGt                                                                                     >  2:1305645/1‑133 (MQ=255)
                                              cagACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGt                                                                                     >  2:825556/1‑133 (MQ=255)
                                              cagACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAatat                                                                                <  2:366679/138‑1 (MQ=255)
                                              cagACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAatat                                                                                >  1:366679/1‑138 (MQ=255)
                                              cagACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGt                                                                              >  2:516298/1‑140 (MQ=255)
                                               agACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTa                                                                             >  1:1213382/1‑140 (MQ=255)
                                               agACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTa                                                                             <  1:466104/140‑1 (MQ=255)
                                                gACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTtcg                                                                                          >  1:1168700/1‑126 (MQ=255)
                                                gACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTtcg                                                                                          <  2:1168700/126‑1 (MQ=255)
                                                 aCGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACg                                                                           >  1:736852/1‑140 (MQ=255)
                                                 aCGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACg                                                                           >  2:851233/1‑140 (MQ=255)
                                                 aCGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACg                                                                           >  1:452884/1‑140 (MQ=255)
                                                  cGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGt                                                                          >  2:15384/1‑140 (MQ=255)
                                                  cGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGt                                                                          >  2:550592/1‑140 (MQ=255)
                                                        tCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAatat                                                                                >  1:334539/1‑128 (MQ=255)
                                                        tCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAatat                                                                                <  2:334539/128‑1 (MQ=255)
                                                        tCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCa                                                                    >  1:562373/1‑140 (MQ=255)
                                                           cgcCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAgcg                                                                 <  1:1471929/140‑1 (MQ=255)
                                                           cgcCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAgcg                                                                 <  2:1363843/140‑1 (MQ=255)
                                                           cgcCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAgcg                                                                 >  2:485571/1‑140 (MQ=255)
                                                           cgcCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAgcg                                                                 >  1:485574/1‑140 (MQ=255)
                                                            gcCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAgcgc                                                                <  1:550592/140‑1 (MQ=255)
                                                             cccGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGcgcg                                                               <  2:485574/140‑1 (MQ=255)
                                                                ggCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCt                                                            <  2:1053502/140‑1 (MQ=255)
                                                                 gCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCtt                                                           >  1:817149/1‑140 (MQ=255)
                                                                             gAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATgg                                               <  2:568439/140‑1 (MQ=255)
                                                                               aaTGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCg                                             >  1:253570/1‑140 (MQ=255)
                                                                                  gCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCa                                                     >  1:202564/1‑129 (MQ=255)
                                                                                  gCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCa                                                     <  2:202564/129‑1 (MQ=255)
                                                                                  gCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATc                                          <  1:681110/140‑1 (MQ=255)
                                                                                  gCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATc                                          <  2:1014260/140‑1 (MQ=255)
                                                                                   cTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGGGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATcc                                         >  2:293766/1‑140 (MQ=255)
                                                                                   cTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATcc                                         <  2:973495/140‑1 (MQ=255)
                                                                                   cTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATcc                                         >  1:272452/1‑140 (MQ=255)
                                                                                           cgAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATg                                 <  2:103934/140‑1 (MQ=255)
                                                                                             aGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCt                               >  1:238945/1‑140 (MQ=255)
                                                                                                 aGCAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGtt                           <  1:1305741/140‑1 (MQ=255)
                                                                                                   cAATCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTg                         <  2:1213382/140‑1 (MQ=255)
                                                                                                     aacTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGGGGGCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCg                       <  2:44930/138‑1 (MQ=255)
                                                                                                     aTCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCg                       <  2:817149/140‑1 (MQ=255)
                                                                                                      tCTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCGa                      >  1:391580/1‑140 (MQ=255)
                                                                                                       cTGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCGAt                     <  1:5756/140‑1 (MQ=255)
                                                                                                        tGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCGATa                    >  1:1423562/1‑140 (MQ=255)
                                                                                                        tGGGCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCGATa                    >  2:1372334/1‑140 (MQ=255)
                                                                                                         gggCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCGATAg                   <  2:452884/140‑1 (MQ=255)
                                                                                                          ggCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCGATAGt                  >  1:1142771/1‑140 (MQ=255)
                                                                                                          ggCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCGATAGt                  >  1:1052620/1‑140 (MQ=255)
                                                                                                           gCTTCTTGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCGATAGtt                 <  2:769104/140‑1 (MQ=255)
                                                                                                            cttcttGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCGATAGTTg                <  2:562373/140‑1 (MQ=255)
                                                                                                               cttGTTGCAGGCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCGATAGTTGATc             <  2:526758/140‑1 (MQ=255)
                                                                                                                        ggCTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCGATAGTTGATCCTCAGCGAg    <  2:1142771/140‑1 (MQ=255)
                                                                                                                          cTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCGATAGTTGATCCTCAGCGAGGa  <  2:1045378/140‑1 (MQ=255)
                                                                                                                          cTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCGATAGTTGATCCTCAGCGAGGa  <  2:736852/140‑1 (MQ=255)
                                                                                                                          cTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCGATAGTTGATCCTCAGCGAGGa  <  2:391580/140‑1 (MQ=255)
                                                                                                                          cTCAATGGAAAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCGATAGTTGATCCTCAGCGAGGa  <  2:493124/140‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                   
GAGCAGTTTCCGGATCATGAATGGAACAAGGACCACATACTACCAGCAGACGAGGATCGCGCCCGGCGATAATATCTGAAATGCTTTTACGCGAGTCAGCAATCTGGGCTTCTTGTTGCAGGCTCAATGG‑AAAAGCGGCCTTCAGTTGTTCCGGAGTCATTAAAACCTGTTCGTCGGTAATATGTACGTTATTCAGCGCGTCTTTTTGCATGATGGCGATCCTGTTTATGCTCGTTTGCGATAGTTGATCCTCAGCGAGGA  >  NC_000913/2740940‑2741200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A