Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 224 87.5 2960670 99.3% 2939945 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,244,741 T→C M1M (ATG→GTG) † uxaC ← D‑glucoronate/D‑galacturonate isomerase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,244,7410TC100.0% 257.9 / NA 74M1M (ATG→GTG) †uxaCD‑glucoronate/D‑galacturonate isomerase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (34/40);  total (34/40)

CGATAGTCTTCCGCAATCTGCTGCGGCGGCAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCATTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGATCAATAAACGTAGTTAAAAAAATTACTCTCAA  >  NC_000913/3244605‑3244875
                                                                                                                                        |                                                                                                                                      
cGATAGTCTTCCGCAATCTGCTGCGGCGGCAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCActtt                                                                                                                                     >  2:1179631/1‑140 (MQ=255)
 gATAGTCTTCCGCAATCTGCTGCGGCGGCAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCActt                                                                                                                                      >  1:557056/1‑138 (MQ=255)
     gTCTTCCGCAATCTGCTGCGGCGGCAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCt                                                                                                                                <  2:974948/140‑1 (MQ=255)
       cTTCCGCAATCTGCTGCGGCGGCAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTc                                                                                                                              <  1:843801/140‑1 (MQ=255)
        ttCCGCAATCTGCTGCGGCGGCAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTcc                                                                                                                             >  1:512827/1‑140 (MQ=255)
             cAATCTGCTGCGGCGGCAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCa                                                                                                                        >  2:1390234/1‑140 (MQ=255)
             cAATCTGCTGCGGCGGCAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCa                                                                                                                        >  2:1203860/1‑140 (MQ=255)
                tCTGCTGCGGCGGCAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACg                                                                                                                     >  2:683056/1‑140 (MQ=255)
                 ctgctgCGGCGGCAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGa                                                                                                                    <  1:1179631/140‑1 (MQ=255)
                  tgctgcGGCGGCAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAg                                                                                                                   >  1:1310620/1‑140 (MQ=255)
                   gctgcGGCGGCAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGt                                                                                                                  <  1:1203860/140‑1 (MQ=255)
                    ctgcGGCGGCAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTg                                                                                                                 <  2:673779/140‑1 (MQ=255)
                      gcggcgGCAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGag                                                                                                               <  1:991779/140‑1 (MQ=255)
                         gcggcAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGagcta                                                                                                            >  2:948626/1‑140 (MQ=255)
                          cggcAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGagctag                                                                                                           <  2:345299/140‑1 (MQ=255)
                          cggcAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGagctag                                                                                                           <  2:1225095/140‑1 (MQ=255)
                          cggcAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGagctag                                                                                                           >  1:741365/1‑140 (MQ=255)
                            gcAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGagctagct                                                                                                         <  2:512827/140‑1 (MQ=255)
                                    cAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATg                                                                                                 <  1:683056/140‑1 (MQ=255)
                                      aTGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGt                                                                                               <  2:971110/140‑1 (MQ=255)
                                         gTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCg                                                                                            >  2:108042/1‑140 (MQ=255)
                                            aTCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTg                                                                                              <  2:8435/135‑1 (MQ=255)
                                            aTCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTg                                                                                              >  1:8435/1‑135 (MQ=255)
                                            aTCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATg                                                                                         >  1:349867/1‑140 (MQ=255)
                                                aaaaTCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGa                                                                                     <  1:727810/140‑1 (MQ=255)
                                                   aTCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACaa                                                                                  >  1:909179/1‑140 (MQ=255)
                                                             cTTTTGCGTAGTAGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATcaca                                                                        <  2:1003842/140‑1 (MQ=255)
                                                                ttGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCa                                                                     <  2:83042/140‑1 (MQ=255)
                                                                     tAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTc                                                                <  2:170452/140‑1 (MQ=255)
                                                                     tAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTc                                                                >  2:1081200/1‑140 (MQ=255)
                                                                      aGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTcc                                                               >  1:550689/1‑140 (MQ=255)
                                                                        tCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCag                                                             >  1:203957/1‑140 (MQ=255)
                                                                         cGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCaga                                                            <  1:1390234/140‑1 (MQ=255)
                                                                               aCAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGa                                                      <  1:1285890/140‑1 (MQ=255)
                                                                                 aGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAg                                                    <  2:909179/140‑1 (MQ=255)
                                                                                  gACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTTCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGa                                                   >  1:895984/1‑140 (MQ=255)
                                                                                  gACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGa                                                   >  2:33352/1‑140 (MQ=255)
                                                                                  gACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGa                                                   >  2:1074938/1‑140 (MQ=255)
                                                                                  gACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGa                                                   >  2:680736/1‑140 (MQ=255)
                                                                                   aCGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGat                                                  >  2:1194683/1‑140 (MQ=255)
                                                                                    cggcggGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGata                                                 <  2:741365/140‑1 (MQ=255)
                                                                                     ggcggGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCagag                                                           >  1:1117106/1‑129 (MQ=255)
                                                                                     ggcggGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCagag                                                           <  2:1117106/129‑1 (MQ=255)
                                                                                       cggGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGt                                                          <  2:461085/128‑1 (MQ=255)
                                                                                       cggGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGt                                                          >  1:461085/1‑128 (MQ=255)
                                                                                       cggGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATAttt                                              >  2:776819/1‑140 (MQ=255)
                                                                                       cggGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATAttt                                              >  2:1181732/1‑140 (MQ=255)
                                                                                        gggCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATAtttt                                             >  1:1441164/1‑140 (MQ=255)
                                                                                          gCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCg                                           <  1:948626/140‑1 (MQ=255)
                                                                                          gCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCg                                           <  2:662859/140‑1 (MQ=255)
                                                                                          gCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCg                                           <  1:173462/140‑1 (MQ=255)
                                                                                           cAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGt                                          >  1:1126757/1‑140 (MQ=255)
                                                                                              aTTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAg                                       <  1:1194683/140‑1 (MQ=255)
                                                                                               ttCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGt                                      <  1:1181732/140‑1 (MQ=255)
                                                                                                tCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGtt                                     <  2:203957/140‑1 (MQ=255)
                                                                                                  ggTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAg                                   <  1:1386710/140‑1 (MQ=255)
                                                                                                  ggTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAg                                   <  2:550689/140‑1 (MQ=255)
                                                                                                  ggTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAg                                   <  2:1126757/140‑1 (MQ=255)
                                                                                                  ggTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAg                                   <  1:205072/140‑1 (MQ=255)
                                                                                                   gTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGa                                  <  2:1441164/140‑1 (MQ=255)
                                                                                                   gTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGa                                  <  1:33352/140‑1 (MQ=255)
                                                                                                   gTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGa                                  <  1:1081200/140‑1 (MQ=255)
                                                                                                         aaCAGGAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGATCAATa                            >  2:811188/1‑140 (MQ=255)
                                                                                                              gAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGa                                  >  2:546004/1‑129 (MQ=255)
                                                                                                              gAAATCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGa                                  <  1:546004/129‑1 (MQ=255)
                                                                                                                aaTCTTCAGTCATAAACGGAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGATCAATAAACGTAg                     >  1:1113241/1‑140 (MQ=255)
                                                                                                                                  gAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGATCAATAAACGTAGTTAAAAAAATTACTCTCa   <  1:1115294/140‑1 (MQ=255)
                                                                                                                                  gAGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGATCAATAAACGTAGTTAAAAAAATTACTCTCa   <  2:1113241/140‑1 (MQ=255)
                                                                                                                                   aGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGATCAATAAACGTAGTTaaaaaaa            >  1:27555/1‑130 (MQ=255)
                                                                                                                                   aGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGATCAATAAACGTAGTTaaaaaaa            <  2:27555/130‑1 (MQ=255)
                                                                                                                                   aGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGATCAATAAACGTAGTTAAAAAAAt           >  2:1095394/1‑131 (MQ=255)
                                                                                                                                   aGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGATCAATAAACGTAGTTAAAAAAAt           <  1:1095394/131‑1 (MQ=255)
                                                                                                                                   aGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGATCAATAAACGTAGTTAAAAAAATTACTCTCaa  >  2:1179883/1‑140 (MQ=255)
                                                                                                                                   aGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGATCAATAAACGTAGTTAAAAAAATTACTCTCaa  >  2:662441/1‑140 (MQ=255)
                                                                                                                                   aGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGATCAATAAACGTAGTTAAAAAAATTACTCTCaa  >  2:1063855/1‑140 (MQ=255)
                                                                                                                                   aGTCACTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGATCAATAAACGTAGTTAAAAAAATTACTCTCaa  >  2:1253778/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                      
CGATAGTCTTCCGCAATCTGCTGCGGCGGCAAATGGCAATGGTAATCGAAAATCGGCTGGTCTTTTGCGTAGTCGTGATACAGACGGCGGGCAAATTCGGTATCTAACAGGAAATCTTCAGTCATAAACGGAGTCATTTTCGTCTTCCTCTCAACGAGTGAGCTAGCTTGCTTATGGTGCGATGCTGACAAAGTTATCACACCAATTTCCAGAGTCCGAAGATATTTTCGTGAGTTAGATCAATAAACGTAGTTAAAAAAATTACTCTCAA  >  NC_000913/3244605‑3244875

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A