Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 224 87.5 2960670 99.3% 2939945 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,374,484 G→A G2G (GGC→GGT)  nanR ← DNA‑binding transcriptional dual regulator NanR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,374,4840GA100.0% 240.6 / NA 68G2G (GGC→GGT) nanRDNA‑binding transcriptional dual regulator NanR
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (26/42);  total (26/42)

ACGACGGCGGATCATCTGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGGCCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGAA  >  NC_000913/3374349‑3374602
                                                                                                                                       |                                                                                                                      
acgacgGCGGATCATCTGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCa                                                                                                                    <  2:827684/140‑1 (MQ=255)
acgacgGCGGATCATCTGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCa                                                                                                                    <  2:1262401/140‑1 (MQ=255)
 cgacgGCGGATCATCTGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCa                                                                                                                    <  2:15596/139‑1 (MQ=255)
 cgacgGCGGATCATCTGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCa                                                                                                                    >  1:15596/1‑139 (MQ=255)
 cgacgGCGGATCATCTGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCAt                                                                                                                   <  2:1356473/140‑1 (MQ=255)
     ggcggATCATCTGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTg                                                                                                               >  2:90957/1‑140 (MQ=255)
       cggATCATCTGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTa                                                                                                             <  1:377369/140‑1 (MQ=255)
         gATCATCTGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAg                                                                                                           <  2:848844/140‑1 (MQ=255)
         gATCATCTGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAg                                                                                                           >  1:826301/1‑140 (MQ=255)
          atcatcTGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAgg                                                                                                          >  2:650368/1‑140 (MQ=255)
           tcatcTGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGt                                                                                                         <  2:188683/140‑1 (MQ=255)
           tcatcTGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGt                                                                                                         <  1:985076/140‑1 (MQ=255)
             atcTGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCa                                                                                                       <  2:608929/140‑1 (MQ=255)
              tcTGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAg                                                                                                      <  2:1120496/140‑1 (MQ=255)
               cTGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAgt                                                                                                     <  1:100055/140‑1 (MQ=255)
                tGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAgtg                                                                                                    <  1:80623/140‑1 (MQ=255)
                 gTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCa                                                                                                       <  2:210275/136‑1 (MQ=255)
                 gTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCa                                                                                                       >  1:210275/1‑136 (MQ=255)
                   tCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGt                                                                                                         >  2:478893/1‑132 (MQ=255)
                   tCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGt                                                                                                         <  1:478893/132‑1 (MQ=255)
                       gCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTaa                                                                                             >  2:1200980/1‑140 (MQ=255)
                        ctctTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAAc                                                                                            <  1:1175075/140‑1 (MQ=255)
                        ctctTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAAc                                                                                            <  1:1288361/140‑1 (MQ=255)
                            tcttcCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAAcatca                                                                                        >  1:1285185/1‑140 (MQ=255)
                            tcttcCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAAcatca                                                                                        >  2:57820/1‑140 (MQ=255)
                            tcttcCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAAcatca                                                                                        >  2:737979/1‑140 (MQ=255)
                               tcCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACAtcatca                                                                                     <  2:1198952/140‑1 (MQ=255)
                                   ccaTTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGa                                                                                 <  2:602523/140‑1 (MQ=255)
                                   ccaTTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGa                                                                                 <  2:784042/140‑1 (MQ=255)
                                   ccaTTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGa                                                                                 <  1:650368/140‑1 (MQ=255)
                                   ccaTCTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGa                                                                                 <  1:1411910/140‑1 (MQ=255)
                                     aTTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAAcatcat                                                                                       >  1:886433/1‑132 (MQ=255)
                                     aTTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAAcatcat                                                                                       <  2:886433/132‑1 (MQ=255)
                                     aTTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACa                                                                               >  1:464579/1‑140 (MQ=255)
                                       ttCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATc                                                                             <  1:737979/140‑1 (MQ=255)
                                       ttCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATc                                                                             >  1:626101/1‑140 (MQ=255)
                                        tCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATcc                                                                            >  1:1390533/1‑140 (MQ=255)
                                               gTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATcaca                                                                     <  2:464579/140‑1 (MQ=255)
                                                      aCGCGCCAGCGGGCGGCTACGCAGGTTGTGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGa                                                              <  2:11611/140‑1 (MQ=255)
                                                         cgcCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAg                                                           <  1:1202760/140‑1 (MQ=255)
                                                           ccAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTa                                                         >  1:313350/1‑140 (MQ=255)
                                                                       tACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGc                                             <  1:840923/140‑1 (MQ=255)
                                                                       tACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGc                                             <  1:1055024/140‑1 (MQ=255)
                                                                        aCGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCa                                            <  2:527936/140‑1 (MQ=255)
                                                                           cAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAggg                                         <  1:57820/140‑1 (MQ=255)
                                                                              gTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGttt                                      >  2:695649/1‑140 (MQ=255)
                                                                                tGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTtc                                    >  2:1082480/1‑140 (MQ=255)
                                                                                tGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTtc                                    >  2:1426073/1‑140 (MQ=255)
                                                                                tGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTtc                                    >  1:1288822/1‑140 (MQ=255)
                                                                                   gACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGttt                                      >  1:389562/1‑135 (MQ=255)
                                                                                   gACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGttt                                      <  2:389562/135‑1 (MQ=255)
                                                                                   gACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTctct                                 <  2:940941/140‑1 (MQ=255)
                                                                                    aCCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCtt                                >  1:1436786/1‑140 (MQ=255)
                                                                                     ccAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCttt                               <  1:34207/140‑1 (MQ=255)
                                                                                     ccAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCttt                               <  2:1436786/140‑1 (MQ=255)
                                                                                            cAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGc                           >  1:216937/1‑137 (MQ=255)
                                                                                            cAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGc                           <  2:216937/137‑1 (MQ=255)
                                                                                                tGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGCCtcatca                    <  2:1390533/140‑1 (MQ=255)
                                                                                                 gaagaaTCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGCCTcatcat                   >  1:175920/1‑140 (MQ=255)
                                                                                                   agaaTCTTCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGCCTCATAATTa                 <  1:1384452/140‑1 (MQ=255)
                                                                                                         ttCGGTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATaa           >  2:1307614/1‑140 (MQ=255)
                                                                                                            ggTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGCCt                         >  1:42877/1‑123 (MQ=255)
                                                                                                            ggTTTGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGCCt                         <  2:42877/123‑1 (MQ=255)
                                                                                                               ttGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACg     <  1:90957/140‑1 (MQ=255)
                                                                                                               ttGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACg     >  1:325809/1‑140 (MQ=255)
                                                                                                                tGCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACgg    <  2:626101/140‑1 (MQ=255)
                                                                                                                 gCGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGa   <  1:1082480/140‑1 (MQ=255)
                                                                                                                  cGAATCAAATGCGTTCATAAGACCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGaa  <  2:1285185/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                      
ACGACGGCGGATCATCTGTTCCAGCTCTTCTTCCACCATTTCGGAGAGTTTTTTACGCGCCAGCGGGCGGCTACGCAAGTTGCGACCAATTGCAGGTGAAGAATCTTCGGTTTGCGAATCAAATGCGTTCATAAGGCCCATTCTGTAAGGTCAGTGTGATTAACATCATCAGTGACATCCTATCACAGGATTGAAAGTAGGGGAAAATGGCAGGGTTTTCTCTTTGTGCCTCATCATTACCATAATTAACGGAA  >  NC_000913/3374349‑3374602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A