Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	224	87.5	2960670	99.3%	2939945	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,629,470	(T)_5→6	coding (69/2736 nt)	rbbA ←	ribosome‑associated ATPase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,629,465	1	.	T	95.4%	214.1 / 2.1	65	coding (74/2736 nt)	rbbA	ribosome‑associated ATPase
Reads supporting (aligned to +/- strand): ref base . (1/2); new base T (33/29); total (34/31)
Fisher's exact test for biased strand distribution p-value = 6.02e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

ATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑G‑TTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCAC  >  NC_000913/3629330‑3629598

aTCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑G‑tttt                                                                                                                                    <  1:1465454/140‑1 (MQ=255)

 tCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑G‑ttttt                                                                                                                                   >  1:1395723/1‑140 (MQ=255)

 tCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑G‑ttttt                                                                                                                                   >  2:227359/1‑140 (MQ=255)

   acaTTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑G‑ttttttc                                                                                                                                 <  2:1405227/140‑3 (MQ=255)

     aTTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑G‑ttttttcca                                                                                                                               <  2:861567/140‑5 (MQ=255)

      ttGCCCTGTTCAATGACGCGGGCACCGGAAATCAACAACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑G‑ttttttccat                                                                                                                              >  1:819474/1‑135 (MQ=255)

         cccTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAAt                                                                                                                           >  2:1434753/1‑140 (MQ=255)

                  aTGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCa                                                                                                                  <  1:1434753/140‑1 (MQ=255)

                   tGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCAc                                                                                                                 >  1:1224219/1‑140 (MQ=255)

                      cgcgGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCAcgcc                                                                                                              >  1:1099555/1‑140 (MQ=255)

                        cgGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCAcgcccg                                                                                                            >  2:766972/1‑140 (MQ=255)

                        cgGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCAcgcccg                                                                                                            >  1:709216/1‑140 (MQ=255)

                        cgGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCAcgcccg                                                                                                            >  1:928092/1‑140 (MQ=255)

                        cgGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCAcgcccg                                                                                                            >  1:342119/1‑140 (MQ=255)

                        cgGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCAcgcccg                                                                                                            >  1:1466484/1‑140 (MQ=255)

                        cgGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCAcgcccg                                                                                                            >  1:1431126/1‑140 (MQ=255)

                               cGGAAATCAACGACAACAAGCTGGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCACCGTT‑TTTTT‑CCATAATGCTGGCTCCCGGCCGCCAGTTg                                                                                                     <  2:1425168/140‑1 (MQ=255)

                                ggAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTgc                                                                                                    >  1:129142/1‑140 (MQ=255)

                                 gAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTgcg                                                                                                   >  2:1330622/1‑140 (MQ=255)

                                 gAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTgcg                                                                                                   >  2:1001832/1‑140 (MQ=255)

                                        aCGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAgg                                                                                            <  2:1466484/140‑1 (MQ=255)

                                         cGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGc                                                                                           >  2:963428/1‑140 (MQ=255)

                                                aaGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGcgggacgg                                                                                    <  2:112972/140‑1 (MQ=255)

                                                   cTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGaa                                                                                 >  2:786391/1‑140 (MQ=255)

                                                   cTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGaa                                                                                 <  2:910934/140‑1 (MQ=255)

                                                    tCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAAc                                                                                <  2:928092/140‑1 (MQ=255)

                                                     cGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAAcc                                                                               <  1:1001832/140‑1 (MQ=255)

                                                     cGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAAcc                                                                               <  2:129142/140‑1 (MQ=255)

                                                     cGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAAcc                                                                               <  1:1330622/140‑1 (MQ=255)

                                                              gACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGa                                                                      >  1:404008/1‑140 (MQ=255)

                                                                     tCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTcc                                                                         >  1:1475797/1‑130 (MQ=255)

                                                                     tCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTcc                                                                         <  2:1475797/130‑1 (MQ=255)

                                                                     tCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCa                                                               >  1:1369277/1‑140 (MQ=255)

                                                                      ccGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCAt                                                              <  1:227359/140‑1 (MQ=255)

                                                                           ccAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCgg                                                         <  1:1293278/140‑1 (MQ=255)

                                                                            cAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGc                                                        <  1:1001493/140‑1 (MQ=255)

                                                                               tCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAAc                                                     <  1:666997/140‑1 (MQ=255)

                                                                               tCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAAc                                                     <  2:1395723/140‑1 (MQ=255)

                                                                                cAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAAcc                                                    <  1:379621/140‑1 (MQ=255)

                                                                                 aGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCt                                                   <  2:1369277/140‑1 (MQ=255)

                                                                                 aGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGACGCGTCATTGCGGCAACCt                                                   <  1:786391/140‑1 (MQ=255)

                                                                                   cccGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTca                                                 >  1:183620/1‑140 (MQ=255)

                                                                                        ccATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACg                                            >  2:957296/1‑140 (MQ=255)

                                                                                          aTACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAg                                          <  1:957296/140‑1 (MQ=255)

                                                                                           tACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGGACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAgg                                         >  2:173298/1‑140 (MQ=255)

                                                                                               gCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtcgt                                     <  2:183620/140‑1 (MQ=255)

                                                                                                  ggCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAg                                  >  1:417197/1‑140 (MQ=255)

                                                                                                  ggCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAg                                  >  2:855333/1‑140 (MQ=255)

                                                                                                  ggCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAg                                  >  2:1114076/1‑140 (MQ=255)

                                                                                                  ggCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAg                                  >  1:6587/1‑140 (MQ=255)

                                                                                                    ccGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGc                                <  2:1224219/140‑1 (MQ=255)

                                                                                                        aaTATCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACg                            >  2:64936/1‑140 (MQ=255)

                                                                                                           atCGAGAGTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGaa                         <  1:1114076/140‑1 (MQ=255)

                                                                                                               agagTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGttc                     <  2:1431126/140‑1 (MQ=255)

                                                                                                                 agTGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGttctt                   >  1:901551/1‑140 (MQ=255)

                                                                                                                  gTGATATTGTTCAGCGCAACG‑G‑TTTTTACCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGaa                         >  2:160209/1‑133 (MQ=255)

                                                                                                                  gTGATATTGTTCAGCGCAACG‑G‑TTTTTACCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGaa                         <  1:160209/133‑1 (MQ=255)

                                                                                                                   tGATATTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCttca                 <  2:1099555/140‑1 (MQ=255)

                                                                                                                     atatTGTTCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCttcatt               >  1:553693/1‑140 (MQ=255)

                                                                                                                           ttCAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCg         <  2:553693/140‑1 (MQ=255)

                                                                                                                             cAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCAcc           >  2:767853/1‑136 (MQ=255)

                                                                                                                             cAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCAcc           <  1:213874/136‑1 (MQ=255)

                                                                                                                             cAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCAcc           >  2:213874/1‑136 (MQ=255)

                                                                                                                             cAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCAcc           <  1:767853/136‑1 (MQ=255)

                                                                                                                             cAGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCa       >  1:55039/1‑140 (MQ=255)

                                                                                                                              aGCGCAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCAc      >  1:469447/1‑140 (MQ=255)

                                                                                                                               gcgcAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCAcc     <  2:417197/140‑1 (MQ=255)

                                                                                                                               gcgcAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCAcc     <  2:901551/140‑1 (MQ=255)

                                                                                                                               gcgcAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCAcc     <  1:766972/140‑1 (MQ=255)

                                                                                                                                cgcAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGGCGGGAAACAGTTTCAGATGCGTCATTGCTGCGACCTCTCCACGCAGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCAccc    >  2:578721/1‑140 (MQ=255)

                                                                                                                                  cAACG‑GTTTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCAc  >  2:1076049/1‑140 (MQ=255)

ATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACG‑G‑TTTTT‑CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCAC  >  NC_000913/3629330‑3629598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A