Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	224	87.5	2960670	99.3%	2939945	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,649,771	(C)_5→6	coding (837/1290 nt)	arsB →	arsenite/antimonite:H(+) antiporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,649,766	1	.	C	100.0%	213.0 / NA	62	A278P (GCC→CCC)	arsB	arsenite/antimonite:H(+) antiporter
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (34/28); total (34/28)

CTGCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTG‑CCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGCGGATAACGGCCTGTGGGCCGCGACGCT  >  NC_000913/3649628‑3649899

cTGCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTG‑c                                                                                                                                      >  1:671369/1‑140 (MQ=255)

  gCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTG‑ccc                                                                                                                                    >  1:421094/1‑140 (MQ=255)

         ctgGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTG‑cccccctggc                                                                                                                             <  2:421094/140‑6 (MQ=255)

            gtggGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGa                                                                                                                           <  1:327231/140‑1 (MQ=255)

             tggGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGAt                                                                                                                          >  2:144352/1‑140 (MQ=255)

              gggATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGAtt                                                                                                                         >  2:673454/1‑140 (MQ=255)

                      tCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCAtctt                                                                                                                 >  2:224437/1‑140 (MQ=255)

                            tGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTctcgct                                                                                                           <  2:693487/140‑1 (MQ=255)

                            tGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTctcgct                                                                                                           <  1:179284/140‑1 (MQ=255)

                                  cGCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCAt                                                                                                     <  1:431796/140‑1 (MQ=255)

                                   gCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTctcgct                                                                                                           <  2:37915/133‑1 (MQ=255)

                                   gCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTctcgct                                                                                                           >  1:37915/1‑133 (MQ=255)

                                    cTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGt                                                                                                   >  1:310056/1‑140 (MQ=255)

                                    cTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGt                                                                                                   >  1:514600/1‑140 (MQ=255)

                                    cTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGt                                                                                                   >  1:437326/1‑140 (MQ=255)

                                    cTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGt                                                                                                   >  1:1175916/1‑140 (MQ=255)

                                    cTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGt                                                                                                   >  2:1406563/1‑140 (MQ=255)

                                    cTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGt                                                                                                   >  2:1463953/1‑140 (MQ=255)

                                    cTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGt                                                                                                   >  2:881113/1‑140 (MQ=255)

                                         cATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCtg                                                                                              <  2:671369/140‑1 (MQ=255)

                                                gTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGt                                                                                                   >  1:960848/1‑128 (MQ=255)

                                                gTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGt                                                                                                   <  2:960848/128‑1 (MQ=255)

                                                gTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGttt                                                                                       <  2:437326/140‑1 (MQ=255)

                                                gTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGttt                                                                                       <  1:144352/140‑1 (MQ=255)

                                                gTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATCCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGttt                                                                                       <  2:1130782/140‑1 (MQ=255)

                                                  gAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTAt                                                                                     <  2:1100898/140‑1 (MQ=255)

                                                          ttGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTgcg                                                                             <  2:1175916/140‑1 (MQ=255)

                                                                cTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGc                                                                       <  1:224437/140‑1 (MQ=255)

                                                                    gggCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGa                                                                   <  2:514600/140‑1 (MQ=255)

                                                                    gggCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGa                                                                   >  1:889027/1‑140 (MQ=255)

                                                                     ggCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGAt                                                                  >  2:1196233/1‑140 (MQ=255)

                                                                     ggCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGAt                                                                  >  1:1415105/1‑140 (MQ=255)

                                                                     ggCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGAt                                                                  <  1:1406563/140‑1 (MQ=255)

                                                                        gcgcTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTaa                                                               <  2:306857/140‑1 (MQ=255)

                                                                                    tttGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCttt                                                   <  2:889027/140‑1 (MQ=255)

                                                                                       gtcgtcGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTg                                                <  2:236616/140‑1 (MQ=255)

                                                                                        tcgtcgCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTgg                                               >  1:792823/1‑140 (MQ=255)

                                                                                        tcgtcgCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTgg                                               >  2:292701/1‑140 (MQ=255)

                                                                                        tcgtcgCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTgg                                               >  1:408765/1‑140 (MQ=255)

                                                                                          gtcgCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCg                                             >  2:1140528/1‑140 (MQ=255)

                                                                                           tcgCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGt                                            >  2:345434/1‑140 (MQ=255)

                                                                                            cgCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTa                                           >  1:900657/1‑140 (MQ=255)

                                                                                              cTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACt                                         >  1:84083/1‑140 (MQ=255)

                                                                                               tAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTc                                        <  1:77855/140‑1 (MQ=255)

                                                                                                      ggTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGc                                 <  2:657701/140‑1 (MQ=255)

                                                                                                      ggTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGc                                 <  2:251188/140‑1 (MQ=255)

                                                                                                       gTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTgg                                               <  1:409084/125‑1 (MQ=255)

                                                                                                       gTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTgg                                               >  2:409084/1‑125 (MQ=255)

                                                                                                           tGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGCg                            >  2:283906/1‑140 (MQ=255)

                                                                                                           tGCGATTAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGCg                            >  1:620732/1‑140 (MQ=255)

                                                                                                                 tAATACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGCGGATAAc                      <  1:160077/140‑1 (MQ=255)

                                                                                                                  aaTACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGc                             <  1:434846/132‑1 (MQ=255)

                                                                                                                  aaTACGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGc                             >  2:434846/1‑132 (MQ=255)

                                                                                                                      cGGGTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGCGGATAACGGCCt                 <  1:881113/140‑1 (MQ=255)

                                                                                                                         gTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGCGGATAACGGCCtgtg              >  1:542284/1‑140 (MQ=255)

                                                                                                                         gTAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGCGGATAACGGCCtgtg              >  1:458738/1‑140 (MQ=255)

                                                                                                                          tAAAGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGCGGATAACGGCCTGTgg             >  2:824817/1‑140 (MQ=255)

                                                                                                                            aaGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGCGGATAACGGCCTGTGGGc           >  1:965615/1‑140 (MQ=255)

                                                                                                                            aaGTCCTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGCGGATAACGGCCTGTGGGc           >  1:413388/1‑140 (MQ=255)

                                                                                                                                 cTGCGCGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGCGGATAACGGCCTGTGGGCCGCGa      <  2:84083/140‑1 (MQ=255)

                                                                                                                                   gcgcGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGCGGATAACGGCCTGTGGGCCGCGa      >  2:1436187/1‑138 (MQ=255)

                                                                                                                                   gcgcGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGCGGATAACGGCCTGTGGGCCGCGa      <  1:1436187/138‑1 (MQ=255)

                                                                                                                                   gcgcGGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGCGGATAACGGCCTGTGGGCCGCGACg    >  1:1363207/1‑140 (MQ=255)

                                                                                                                                    cgcgGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGCGGATAACGGCCTGTGGGCCGCGACGc   >  1:1335426/1‑140 (MQ=255)

                                                                                                                                     gcgGTGCCCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGCGGATAACGGCCTGTGGGCCGCGACGCt  <  1:283906/140‑1 (MQ=255)

CTGCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTG‑CCCCCTGGCAGATTGTCATCTTCTCGCTCGGCATGTATCTGGTGGTTTATGGCCTGCGCAATGCCGGATTAACGGAATATCTTTCTGGCGTACTCAACGTGCTGGCGGATAACGGCCTGTGGGCCGCGACGCT  >  NC_000913/3649628‑3649899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A