Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
151 |
83.1 |
2798978 |
99.4% |
2782184 |
139.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
636,404 |
(T)7→8 |
coding (166/1221 nt) |
ybdN ← |
putative PAPS reductase/DUF3440 domain‑containing protein YbdN |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 636,397 | 1 | . | T | 97.7%
| 464.2
/ 1.4
| 130 | coding (173/1221 nt) | ybdN | putative PAPS reductase/DUF3440 domain‑containing protein YbdN |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base T (76/51); total (77/53) |
| Fisher's exact test for biased strand distribution p-value = 5.67e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.21e-01 |
Only 100 of 137 total aligned reads displayed.
TGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GA‑TTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTAATACGCTCTCGTGCAGCTTCC > NC_000913/636258‑636531
|
tgAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑Ga > 1:935355/1‑140 (MQ=255)
tgAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑Ga > 2:816508/1‑140 (MQ=255)
aGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GA‑tttt > 1:1133018/1‑140 (MQ=255)
gggAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GA‑ttttt > 2:53841/1‑140 (MQ=255)
ttttGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GA‑ttttttttgc > 2:702700/1‑137 (MQ=255)
tcgtAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTg > 2:956602/1‑140 (MQ=255)
tAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCg > 2:1029772/1‑140 (MQ=255)
aGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGtt < 2:79871/140‑1 (MQ=255)
cccAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAA‑TGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTc < 1:133171/140‑1 (MQ=255)
aaaCTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCAGGT‑TTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATgc < 1:105175/140‑1 (MQ=255)
aaaCTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATgc < 1:554818/140‑1 (MQ=255)
aaaCTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATgc < 2:920554/140‑1 (MQ=255)
ctctTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATgcagc > 2:1022057/1‑140 (MQ=255)
ctctTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATgc < 1:294217/137‑1 (MQ=255)
ctctTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATgc > 2:435832/1‑137 (MQ=255)
ctctTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATgc > 2:294217/1‑137 (MQ=255)
tGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAAcc < 1:1029772/140‑1 (MQ=255)
gACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCa < 1:956602/140‑1 (MQ=255)
tACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTgc > 2:726058/1‑140 (MQ=255)
aCAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTgcc < 2:709661/140‑1 (MQ=255)
aaCTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTgccgc > 2:515632/1‑140 (MQ=255)
aaCTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTgccgc > 1:1199318/1‑140 (MQ=255)
aaCTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTgccgc > 1:875962/1‑140 (MQ=255)
cTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCa > 1:865237/1‑140 (MQ=255)
cTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCa < 1:702700/140‑1 (MQ=255)
cTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCa < 1:625804/140‑1 (MQ=255)
cTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCa > 1:1043152/1‑140 (MQ=255)
cTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCa > 1:440719/1‑140 (MQ=255)
cTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCa > 1:450775/1‑140 (MQ=255)
cgcgCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGa > 2:1276321/1‑140 (MQ=255)
gcgcAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGaa > 2:462636/1‑140 (MQ=255)
gcgcAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGaa > 2:224964/1‑140 (MQ=255)
gcAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGaaaa > 2:607833/1‑140 (MQ=255)
aCTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGac > 1:637668/1‑140 (MQ=255)
tGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGacac < 1:224964/140‑1 (MQ=255)
aaCATAGTTAATGGTGCAGGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACaa > 2:98974/1‑140 (MQ=255)
aTAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAAcg < 2:922657/140‑1 (MQ=255)
tAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAAcgc > 1:569909/1‑140 (MQ=255)
tAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAAcgc > 2:675999/1‑140 (MQ=255)
tAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAAc < 2:360480/138‑1 (MQ=255)
aGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAAcgcg > 2:170031/1‑140 (MQ=255)
aGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAAcgcg > 2:453235/1‑140 (MQ=255)
aGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAAcgcg < 1:515632/140‑1 (MQ=255)
aGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAAcgcg > 1:222297/1‑140 (MQ=255)
aGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAAcgcg < 1:462636/140‑1 (MQ=255)
ttAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCggg < 1:453235/140‑1 (MQ=255)
aaTGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGt < 2:461058/140‑1 (MQ=255)
aTGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTa > 1:756714/1‑140 (MQ=255)
aTGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTa > 2:947526/1‑140 (MQ=255)
aTGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTa < 2:1382473/140‑1 (MQ=255)
aTGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTa > 2:633167/1‑140 (MQ=255)
tGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAg > 2:284141/1‑140 (MQ=255)
gCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGgtg > 1:207240/1‑140 (MQ=255)
cAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGAcaca < 1:688702/123‑1 (MQ=255)
cAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGAAGGgtgt > 1:904814/1‑140 (MQ=255)
aaGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGtt > 1:139105/1‑140 (MQ=255)
aaGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGtt < 2:621939/140‑1 (MQ=255)
aaGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGtt > 1:1173870/1‑140 (MQ=255)
aaGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGtt > 1:860097/1‑140 (MQ=255)
agagAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTg < 2:756714/140‑1 (MQ=255)
gagaATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGa < 1:22902/140‑1 (MQ=255)
gagaATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGa > 1:779339/1‑140 (MQ=255)
gagaATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGa < 1:947526/140‑1 (MQ=255)
agaATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAg < 2:1199318/140‑1 (MQ=255)
agaATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAg < 1:1273928/140‑1 (MQ=255)
agaATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAg < 1:284141/140‑1 (MQ=255)
agaATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAg < 1:692586/140‑1 (MQ=255)
gaATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAgt < 2:1121117/140‑1 (MQ=255)
gaATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAgt > 1:776595/1‑140 (MQ=255)
aaTTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAgtg > 2:160758/1‑140 (MQ=255)
aaTTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAgtg > 1:491200/1‑140 (MQ=255)
aaTTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAgtg > 2:406422/1‑140 (MQ=255)
aTTGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAgtgt > 2:316134/1‑140 (MQ=255)
ttGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAgg < 2:870256/128‑1 (MQ=255)
ttGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTc > 1:638299/1‑140 (MQ=255)
ttGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTc < 1:536405/140‑1 (MQ=255)
ttGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTc > 2:499561/1‑140 (MQ=255)
ttGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTc > 2:17937/1‑140 (MQ=255)
tGCGCCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTcc < 2:222297/140‑1 (MQ=255)
gcCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAgg < 1:726058/140‑1 (MQ=255)
gcCTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAgg < 1:607833/140‑1 (MQ=255)
ccTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGt > 2:10557/1‑140 (MQ=255)
cTCCCAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTa > 2:1019384/1‑140 (MQ=255)
cccAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTAAt > 2:1052951/1‑140 (MQ=255)
ccAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTAATa < 1:376149/140‑1 (MQ=255)
ccAGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTAATa < 2:749997/140‑1 (MQ=255)
aGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTAATa > 2:483168/1‑138 (MQ=255)
aGTCGATAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTAATa < 1:483168/138‑1 (MQ=255)
aTAAACAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTAATACGCtctc > 2:675677/1‑140 (MQ=255)
aaaCAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCGAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAAGGCGGGGTGGGGTGATGAGTGTCCAGGTAATACGCACTCGt > 2:1236569/1‑140 (MQ=255)
aaaCAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTc > 2:6732/1‑122 (MQ=255)
aaaCAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTAATACGc < 1:374566/134‑1 (MQ=255)
aaaCAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTAATACGc > 2:374566/1‑134 (MQ=255)
aaaCAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTAATACGCTCTCGt > 1:329610/1‑140 (MQ=255)
aaaCAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTAATACGCTCTCGt > 2:1370219/1‑140 (MQ=255)
aaaCAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTAATACGCTCTCGt > 2:363012/1‑140 (MQ=255)
cAAAACGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTAATACGCTCTCGTGCa < 2:637668/140‑1 (MQ=255)
aaaCGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTAATACGCTCTCGTGCAGc < 1:1276321/140‑1 (MQ=255)
aaaCGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTAATACGCTCTCGTGCAGc < 1:749072/140‑1 (MQ=255)
aaCGCA‑GATTTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAACATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTAATACGCTCTCGTGCAGCt > 1:806234/1‑140 (MQ=255)
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TGAAAGGGAATTTTGCGTCGTAAGCGGGAGCGCAACCCAGTAAAACTCTTCGATGACATCGGTGTACAACTCGCGCAGGGACTGAACATAGTTAATGGTGCAAGAGAATTGCGCCTCCCAGTCGATAAACAAAACGCA‑GA‑TTTTTTTGCCCATTTGTCGGGCAAGTTCGGCTGTCAGATGCAGCATTAAACCAGAGTCTTTGCCGCCAGAAAATGAGACACAAACGCGGGGTAGGGTGTTGAGTGTCCAGGTAATACGCTCTCGTGCAGCTTCC > NC_000913/636258‑636531
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
