Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 151 83.1 2798978 99.4% 2782184 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,773,137 C→T pseudogene (46/1016 nt) yfjV ← CP4‑57 prophage; putative arsenite transporter, N‑terminal fragment

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,773,1370CT100.0% 284.8 / NA 82pseudogene (46/1016 nt)yfjVCP4‑57 prophage; putative arsenite transporter, N‑terminal fragment
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (42/40);  total (42/40)

CAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGAAATTGGTTGCTAGAAAGTCGATGATTTGTTGCG  >  NC_000913/2773001‑2773273
                                                                                                                                        |                                                                                                                                        
cAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATc                                                                                                                                       <  2:1151970/140‑1 (MQ=255)
cAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATc                                                                                                                                       <  1:863715/140‑1 (MQ=255)
  ggCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCaa                                                                                                                                     >  1:1167041/1‑140 (MQ=255)
       gCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCg                                                                                                                                >  1:878481/1‑140 (MQ=255)
       gCCGTATCTGCAATAAATCCTGAAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCg                                                                                                                                >  1:694443/1‑140 (MQ=255)
          gTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCa                                                                                                                             <  1:827073/140‑1 (MQ=255)
             tCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGGATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCg                                                                                                                          >  2:323590/1‑140 (MQ=255)
              cTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGa                                                                                                                         >  2:575599/1‑140 (MQ=255)
               tGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAg                                                                                                                        <  1:817534/140‑1 (MQ=255)
                 cAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCa                                                                                                                      >  2:920546/1‑140 (MQ=255)
                  aaTAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGGATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCaa                                                                                                                     <  1:323590/140‑1 (MQ=255)
                  aaTAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCaa                                                                                                                     >  2:825896/1‑140 (MQ=255)
                      aaTCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACt                                                                                                                 >  2:1366597/1‑140 (MQ=255)
                      aaTCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACt                                                                                                                 >  2:106050/1‑140 (MQ=255)
                       aTCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACtt                                                                                                                <  1:106050/140‑1 (MQ=255)
                             cAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAgg                                                                                                          >  2:1337820/1‑140 (MQ=255)
                                  aTGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAAc                                                                                                     >  2:1180210/1‑140 (MQ=255)
                                  aTGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAAc                                                                                                     >  1:1357943/1‑140 (MQ=255)
                                  aTGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAAc                                                                                                     <  1:1337820/140‑1 (MQ=255)
                                   tGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACa                                                                                                    <  2:1176990/140‑1 (MQ=255)
                                         aGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGctc                                                                                              <  1:1366597/140‑1 (MQ=255)
                                         aGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGctc                                                                                              <  1:1118189/140‑1 (MQ=255)
                                             cAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCtagg                                                                                          >  1:511706/1‑140 (MQ=255)
                                              aGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCtaggt                                                                                         >  2:483494/1‑140 (MQ=255)
                                              aGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCtaggt                                                                                         <  2:1060820/140‑1 (MQ=255)
                                              aGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCtaggt                                                                                         <  1:920546/140‑1 (MQ=255)
                                               gtgtCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCtaggta                                                                                        >  2:523914/1‑140 (MQ=255)
                                               gtgtCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCtaggta                                                                                        >  1:530150/1‑140 (MQ=255)
                                                 gtCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGctc                                                                                              >  2:821427/1‑132 (MQ=255)
                                                 gtCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGctc                                                                                              <  1:821427/132‑1 (MQ=255)
                                                     tGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACt                                                                                  >  1:1116501/1‑140 (MQ=255)
                                                     tGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACt                                                                                  >  1:66741/1‑140 (MQ=255)
                                                     tGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACt                                                                                  >  1:560244/1‑140 (MQ=255)
                                                     tGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACt                                                                                  >  2:600852/1‑140 (MQ=255)
                                                     tGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACt                                                                                  >  2:364243/1‑140 (MQ=255)
                                                     tGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACt                                                                                  >  1:511813/1‑140 (MQ=255)
                                                     tGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACt                                                                                  >  2:525254/1‑140 (MQ=255)
                                                     tGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACt                                                                                  >  2:1383928/1‑140 (MQ=255)
                                                       cccTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACttt                                                                                <  1:373868/140‑1 (MQ=255)
                                                          tGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGt                                                                              >  2:484800/1‑139 (MQ=255)
                                                          tGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGt                                                                              <  1:484800/139‑1 (MQ=255)
                                                           ggttGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCg                                                                            <  1:828360/137‑1 (MQ=255)
                                                           ggCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCg                                                                            <  2:1167041/140‑1 (MQ=255)
                                                                 aCCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATa                                                                      >  1:693481/1‑140 (MQ=255)
                                                                 aCCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATa                                                                      <  1:600852/140‑1 (MQ=255)
                                                                  cccAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATag                                                                     <  1:483494/140‑1 (MQ=255)
                                                                      gTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTc                                                                 >  1:170274/1‑140 (MQ=255)
                                                                      gTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTc                                                                 >  2:256124/1‑140 (MQ=255)
                                                                       tGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCt                                                                >  1:814898/1‑140 (MQ=255)
                                                                        gCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCtt                                                               <  2:511706/140‑1 (MQ=255)
                                                                        gCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCtt                                                               <  1:583524/140‑1 (MQ=255)
                                                                        gCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCtt                                                               <  1:574043/140‑1 (MQ=255)
                                                                          gATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCa                                                             <  1:885899/140‑1 (MQ=255)
                                                                          gATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCa                                                             <  2:699794/140‑1 (MQ=255)
                                                                             cAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGcc                                                          <  1:1180210/140‑1 (MQ=255)
                                                                               gCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCAt                                                        <  2:1116501/140‑1 (MQ=255)
                                                                               gCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCAt                                                        <  2:814898/140‑1 (MQ=255)
                                                                               gCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCAt                                                        <  2:123036/140‑1 (MQ=255)
                                                                               gCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCAt                                                        <  2:170274/140‑1 (MQ=255)
                                                                               gCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCAt                                                        <  2:878481/140‑1 (MQ=255)
                                                                                cATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATc                                                       >  1:767338/1‑140 (MQ=255)
                                                                                 aTCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCa                                                      >  2:5330/1‑140 (MQ=255)
                                                                                   cGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAac                                                    <  1:1163217/140‑1 (MQ=255)
                                                                                    gCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGTCATCAaca                                                   <  1:232316/140‑1 (MQ=255)
                                                                                    gCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAaca                                                   <  2:693481/140‑1 (MQ=255)
                                                                                    gCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAaca                                                   <  2:767338/140‑1 (MQ=255)
                                                                                     cAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAacac                                                  >  2:1013945/1‑140 (MQ=255)
                                                                                             aTCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGa                                          >  2:4399/1‑140 (MQ=255)
                                                                                             aTCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGa                                          >  2:317698/1‑140 (MQ=255)
                                                                                             aTCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGa                                          >  2:1010977/1‑140 (MQ=255)
                                                                                             aTCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGa                                          <  1:364243/140‑1 (MQ=255)
                                                                                              tCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAg                                         <  1:1383928/140‑1 (MQ=255)
                                                                                                ggCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCTAGTa                                       >  1:129599/1‑140 (MQ=255)
                                                                                                  cGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAAt                                     >  1:1022033/1‑140 (MQ=255)
                                                                                                  cGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAAt                                     >  1:289533/1‑140 (MQ=255)
                                                                                                  cGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAAt                                     <  1:1013945/140‑1 (MQ=255)
                                                                                                      aGGATCAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGaaa                                 >  2:467428/1‑140 (MQ=255)
                                                                                                           cAGCGCGGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGAAATTGGt                            <  1:825896/140‑1 (MQ=255)
                                                                                                              cgcgGCGCCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGAAATTGGTTGc                         >  1:940606/1‑140 (MQ=255)
                                                                                                                   cgcCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGAAATTGGTTGCTAGaa                    >  1:85730/1‑140 (MQ=255)
                                                                                                                   cgcCGTCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGAAATTGGTTGCTAGaa                    >  1:375006/1‑140 (MQ=255)
                                                                                                                        tCATTGGCAAACAACGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGAAATTGGTTGCTAGAAAGTCg               <  2:1357943/140‑1 (MQ=255)
                                                                                                                                     acGTATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGAAATTGGTTGCTAGAAAGTCGATGATTTGTTGCg  <  2:66741/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
CAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGAAATTGGTTGCTAGAAAGTCGATGATTTGTTGCG  >  NC_000913/2773001‑2773273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A