Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
151 |
83.1 |
2798978 |
99.4% |
2782184 |
139.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,330,676 |
(G)5→6 |
coding (175/1503 nt) |
proP → |
osmolyte:H(+) symporter ProP |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,330,671 | 1 | . | G | 95.5%
| 381.6
/ 8.5
| 111 | coding (170/1503 nt) | proP | osmolyte:H(+) symporter ProP |
| Reads supporting (aligned to +/- strand): ref base . (2/3); new base G (58/48); total (60/51) |
| Fisher's exact test for biased strand distribution p-value = 6.60e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.38e-01 |
Only 100 of 123 total aligned reads displayed.
ACCCTTCGTGATGTCACCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCC‑GG‑GGGCTGACCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTATCA > NC_000913/4330532‑4330805
|
aCCCTTCGTGATGTCACCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTccc < 1:1386620/140‑1 (MQ=255)
gTGATGTCACCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCC‑gg‑ggggc < 2:1153351/140‑3 (MQ=255)
gTCACCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCC‑gg‑ggggctggcc > 2:1054555/1‑133 (MQ=255)
gTCACCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCC‑gg‑ggggctggcc > 1:140060/1‑133 (MQ=255)
gTCACCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCC‑gg‑ggggctggcc < 1:302434/140‑8 (MQ=255)
gTCACCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCC‑gg‑ggggctggcc > 2:266970/1‑133 (MQ=255)
aCCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCa > 2:124033/1‑140 (MQ=255)
aCCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCa > 1:1370909/1‑140 (MQ=255)
aCCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCa > 1:781356/1‑140 (MQ=255)
aCCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCa < 1:775932/140‑1 (MQ=255)
cATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGT‑ATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCC‑gg‑ggggc > 1:246271/1‑127 (MQ=255)
cATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGT‑ATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCC‑gg‑ggggc < 2:246271/129‑3 (MQ=255)
attGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGc > 2:1318230/1‑140 (MQ=255)
ttGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCa > 2:1253856/1‑140 (MQ=255)
ggTAAACTGCGTAAAGCCGTTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTtg < 1:1281115/140‑1 (MQ=255)
ggTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTtg > 1:808177/1‑140 (MQ=255)
tAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTtgct > 2:1022873/1‑140 (MQ=255)
aaaCTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTtgctg < 1:124033/140‑1 (MQ=255)
cGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTg > 1:809399/1‑140 (MQ=255)
cGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTg > 2:204221/1‑140 (MQ=255)
gTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGTAGATGGTTGCTGCACTTGc > 1:705509/1‑140 (MQ=255)
ttACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTtctc > 1:180460/1‑140 (MQ=255)
ttACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTAT‑GTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTcc > 1:595957/1‑140 (MQ=255)
ccGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGt < 2:395637/140‑1 (MQ=255)
agcaTCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTccc > 2:1136600/1‑140 (MQ=255)
aCTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTg > 2:805099/1‑140 (MQ=255)
ggTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTc < 1:401516/140‑1 (MQ=255)
tAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGa < 1:1054555/140‑1 (MQ=255)
tAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGa > 2:367771/1‑140 (MQ=255)
tAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGa < 2:1095646/140‑1 (MQ=255)
tAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGa > 2:632018/1‑140 (MQ=255)
aTGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGAcc > 1:1079483/1‑140 (MQ=255)
tGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCg > 1:333658/1‑140 (MQ=255)
tGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCg > 2:1284426/1‑140 (MQ=255)
tGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCg > 2:66257/1‑140 (MQ=255)
tGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCg > 1:1136767/1‑140 (MQ=255)
atggaatggTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGTAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTg < 2:705509/140‑1 (MQ=255)
tggaatggTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTgg < 1:5440/140‑1 (MQ=255)
tggaatggTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTgg > 1:1330711/1‑140 (MQ=255)
tggaatggTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTgg > 2:252804/1‑140 (MQ=255)
tggaatggTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTgg > 1:91142/1‑140 (MQ=255)
ggaatggTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGc < 2:974750/140‑1 (MQ=255)
tggTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGAc > 1:1045350/1‑128 (MQ=255)
tggTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGAc < 2:1045350/128‑1 (MQ=255)
tggTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGa < 1:1248466/139‑1 (MQ=255)
tggTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGa < 1:1176828/139‑1 (MQ=255)
tggTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGa > 2:1176828/1‑139 (MQ=255)
tggTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGAc > 2:186438/1‑140 (MQ=255)
tggTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGAc > 2:182780/1‑140 (MQ=255)
tggTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGAc > 2:501089/1‑140 (MQ=255)
tggTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCC‑GGAAGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGa > 2:1248466/1‑139 (MQ=255)
ggTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGAct < 2:808177/140‑1 (MQ=255)
gTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGActc > 2:1055525/1‑140 (MQ=255)
gTTCGATTTTGGCGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGActc > 2:580691/1‑140 (MQ=255)
ttCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGAcc > 1:791329/1‑126 (MQ=255)
ttCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGAcc < 2:791329/126‑1 (MQ=255)
ttCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGActct > 1:197728/1‑140 (MQ=255)
ttCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGActct < 2:1370909/140‑1 (MQ=255)
ttCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTT‑‑TCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACtcttc > 1:752970/1‑140 (MQ=255)
ttCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTCCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCg < 1:1112157/134‑1 (MQ=255)
tCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACtctt < 2:592691/140‑1 (MQ=255)
tCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACtctt < 2:91142/140‑1 (MQ=255)
cGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACtcttc > 2:370630/1‑140 (MQ=255)
cGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTT‑‑TCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTcttctt < 2:752970/140‑1 (MQ=255)
gATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACtcttct < 1:988568/140‑1 (MQ=255)
gATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACtcttct < 2:1136767/140‑1 (MQ=255)
aTTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTcttctt > 2:89509/1‑140 (MQ=255)
aTTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTcttctt > 2:1095249/1‑140 (MQ=255)
tttATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGtt < 1:632018/140‑1 (MQ=255)
tATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTgg > 1:1210074/1‑140 (MQ=255)
tATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTgg < 2:197728/140‑1 (MQ=255)
tATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTgg > 2:340598/1‑140 (MQ=255)
atgTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGc < 2:595957/138‑1 (MQ=255)
ggTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCg < 1:367771/140‑1 (MQ=255)
ggTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCg < 1:330172/140‑1 (MQ=255)
ggTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCg < 1:89509/140‑1 (MQ=255)
ttttGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGAt > 1:1019381/1‑140 (MQ=255)
tgttgCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATaaa > 1:1141684/1‑140 (MQ=255)
tgttgCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATaaa > 1:1272974/1‑140 (MQ=255)
gttcCTTACG‑AATAAGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAata < 1:845208/140‑1 (MQ=255)
ttgCTTACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAata < 1:1265414/140‑1 (MQ=255)
ttACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGt < 2:140060/140‑1 (MQ=255)
tACGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTc > 1:1218586/1‑140 (MQ=255)
aCGCATTAGGTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCg < 1:501581/140‑1 (MQ=255)
ggTAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCagaaga > 1:1225523/1‑140 (MQ=255)
tAAAGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATc < 1:646083/140‑1 (MQ=255)
aaaGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATcc < 1:1022873/140‑1 (MQ=255)
aaGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCt < 2:1141684/140‑1 (MQ=255)
aaGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCt < 1:805099/140‑1 (MQ=255)
aGTTTTTTTCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTc > 2:1370234/1‑140 (MQ=255)
tttttttCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGc < 1:1314922/140‑1 (MQ=255)
tttttttCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGc < 1:186438/140‑1 (MQ=255)
ttttcCCG‑GG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTAt < 2:726515/140‑1 (MQ=255)
ttttcCCG‑GG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTAt < 2:333658/140‑1 (MQ=255)
tttcCCG‑GG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTATc < 2:900497/140‑1 (MQ=255)
tttCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTATc > 1:676350/1‑140 (MQ=255)
ttCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTATCa < 1:204221/140‑1 (MQ=255)
ttCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTATCa < 2:801394/140‑1 (MQ=255)
ttCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTATCa < 1:580691/140‑1 (MQ=255)
ttCCCGGG‑GGGCTGGCCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTATCa < 2:809399/140‑1 (MQ=255)
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ACCCTTCGTGATGTCACCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCC‑GG‑GGGCTGACCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTATCA > NC_000913/4330532‑4330805
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
