Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F28 I1 R1	151	83.1	2798978	99.4%	2782184	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,484,372	T→C	intergenic (‑92/+68)	holC ← / ← pepA	DNA polymerase III subunit chi/aminopeptidase A/I

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,484,372	0	T	C	100.0%	240.0 / NA	66	intergenic (‑92/+68)	holC/pepA	DNA polymerase III subunit chi/aminopeptidase A/I
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (45/21); total (45/21)

CGACGGTGGTGTCATTGTCCAGAAGGTAGAACGTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAGGAACTGTGCCAGCAACGCTACCGGACGACCGGT  >  NC_000913/4484235‑4484508

cGACGGTGGTGTCATTGTCCAGAAGGTAGAACGTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTc                                                                                                                                        >  2:1119694/1‑140 (MQ=255)

cGACGGTGGTGTCATTGTCCAGAAGGTAGAACGTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTc                                                                                                                                        >  1:67832/1‑140 (MQ=255)

    ggtggtGTCATTGTCCAGAAGGTAGAACGTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTg                                                                                                                                    <  1:775791/140‑1 (MQ=255)

        gtgtCATTGTCCAGAAGGTAGAACGTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCtgt                                                                                                                                <  1:1119694/140‑1 (MQ=255)

          gtCATTGTCCAGAAGGTAGAACGTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTgtgt                                                                                                                              <  1:1216617/140‑1 (MQ=255)

              ttGTCCAGAAGGTAGAACGTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGt                                                                                                                          >  2:995336/1‑140 (MQ=255)

                 tCCAGAAGGTAGAACGTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTg                                                                                                                                    <  2:1198299/127‑1 (MQ=255)

                 tCCAGAAGGTAGAACGTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTg                                                                                                                                    >  1:1198299/1‑127 (MQ=255)

                 tCCAGAAGGTAGAACGTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTg                                                                                                                                    >  1:55041/1‑127 (MQ=255)

                 tCCAGAAGGTAGAACGTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTg                                                                                                                                    <  2:55041/127‑1 (MQ=255)

                   cAGAAGGTAGAACGTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGAt                                                                                                                     >  2:1364882/1‑140 (MQ=255)

                     gAAGGTAGAACGTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAgg                                                                                                                           >  2:1274738/1‑132 (MQ=255)

                     gAAGGTAGAACGTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAgg                                                                                                                           <  1:1274738/132‑1 (MQ=255)

                           aGAACGTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGtt                                                                                                             >  1:924469/1‑140 (MQ=255)

                               cGTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCAcg                                                                                                         <  1:1312904/140‑1 (MQ=255)

                                gTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCAcgc                                                                                                        >  1:336701/1‑140 (MQ=255)

                                  cgcgTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCAcgccg                                                                                                      >  2:290557/1‑140 (MQ=255)

                                  cgcgTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCAcgccg                                                                                                      >  1:804478/1‑140 (MQ=255)

                                  cgcgTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCAcgccg                                                                                                      >  1:762630/1‑140 (MQ=255)

                                  cgcgTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCAcgccg                                                                                                      >  1:748567/1‑140 (MQ=255)

                                                      cttcttGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCtt                                                                                  >  2:1211209/1‑140 (MQ=255)

                                                      cttcttGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCtt                                                                                  >  2:417097/1‑140 (MQ=255)

                                                          ttGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCt                                                                              >  1:331087/1‑140 (MQ=255)

                                                            gtggtgGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGa                                                                            <  1:1211209/140‑1 (MQ=255)

                                                                           aCGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCg                                                             <  1:1364882/140‑1 (MQ=255)

                                                                           aCGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCg                                                             <  1:851981/140‑1 (MQ=255)

                                                                            cGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGc                                                            >  1:157030/1‑140 (MQ=255)

                                                                            cGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGc                                                            >  2:1337831/1‑140 (MQ=255)

                                                                            cGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGc                                                            >  2:621978/1‑140 (MQ=255)

                                                                            cGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGc                                                            >  1:338545/1‑140 (MQ=255)

                                                                            cGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGc                                                            >  1:456638/1‑140 (MQ=255)

                                                                            cGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGc                                                            >  1:312891/1‑140 (MQ=255)

                                                                               aTCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGt                                                         <  1:483888/140‑1 (MQ=255)

                                                                                 cAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTa                                                       >  1:576119/1‑140 (MQ=255)

                                                                                       taCACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCa                                                 >  1:671719/1‑140 (MQ=255)

                                                                                       taCACCACAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCa                                                 >  2:366429/1‑140 (MQ=255)

                                                                                          acCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAgcg                                              <  2:456638/140‑1 (MQ=255)

                                                                                            cGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGcgcg                                            >  1:520844/1‑140 (MQ=255)

                                                                                            cGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGcgcg                                            >  2:1307504/1‑140 (MQ=255)

                                                                                             gCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAgc                                               >  2:797602/1‑136 (MQ=255)

                                                                                             gCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAgc                                               <  1:797602/136‑1 (MQ=255)

                                                                                             gCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCgg                                           >  1:873432/1‑140 (MQ=255)

                                                                                              cAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGt                                          >  2:60572/1‑140 (MQ=255)

                                                                                              cAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGt                                          >  1:764290/1‑140 (MQ=255)

                                                                                              cAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGt                                          <  2:150031/140‑1 (MQ=255)

                                                                                              cAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGt                                          >  2:818122/1‑140 (MQ=255)

                                                                                              cAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGt                                          <  1:417097/140‑1 (MQ=255)

                                                                                                 cgcCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTa                                       >  1:948481/1‑140 (MQ=255)

                                                                                                 cgcCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTa                                       >  2:948297/1‑140 (MQ=255)

                                                                                                   ccTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAAc                                     >  2:1192760/1‑140 (MQ=255)

                                                                                                      gATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAgg                                  <  1:397373/140‑1 (MQ=255)

                                                                                                          cGACGCTGTTGTGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAGGAACt                              <  1:290557/140‑1 (MQ=255)

                                                                                                                  ttgtGTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAGGAACTGTGCCAGc                      >  2:828013/1‑140 (MQ=255)

                                                                                                                   tgtgTCTTATCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAGGAACTGTGCCAGCa                     <  2:157030/140‑1 (MQ=255)

                                                                                                                            tCAGGCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAGGAACTGTGCCAGCAACGCTACCg            >  1:761508/1‑140 (MQ=255)

                                                                                                                                gCCTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAGGAACTGTGCCAGCAACGCTACCGgacg        <  1:60572/140‑1 (MQ=255)

                                                                                                                                 ccTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAGGAACTGTGCCAGCAAc                   >  2:862224/1‑128 (MQ=255)

                                                                                                                                 ccTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAGGAACTGTGCCAGCAAc                   <  1:862224/128‑1 (MQ=255)

                                                                                                                                 ccTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAGGAACTGTGCCAGCAACGCTACCGgacga       >  1:405325/1‑140 (MQ=255)

                                                                                                                                 ccTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAGGAACTGTGCCAGCAACGCTACCGgacga       >  2:712764/1‑140 (MQ=255)

                                                                                                                                 ccTACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAGGAACTGTGCCAGCAACGCTACCGgacga       >  1:1294384/1‑140 (MQ=255)

                                                                                                                                   tACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAGGAACTGTGCCAGCAACGCTACCGGACGAcc     >  2:575924/1‑140 (MQ=255)

                                                                                                                                   tACGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAGGAACTGTGCCAGCAACGCTACCGGACGAcc     >  2:163333/1‑140 (MQ=255)

                                                                                                                                     cGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAGGAACTGTGCCAGCAACGCTACCGGACGACCgg   >  1:212168/1‑140 (MQ=255)

                                                                                                                                     cGAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAGGAACTGTGCCAGCAACGCTACCGGACGACCgg   >  1:1067129/1‑140 (MQ=255)

                                                                                                                                      gAGCTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAGGAACTGTGCCAGCAACGCTACCGGACGACCGGt  <  2:336701/140‑1 (MQ=255)

CGACGGTGGTGTCATTGTCCAGAAGGTAGAACGTCGCGTTTTTCATAAATGGGGCTTCTTGTGGTGGATTTAAATACGCATCAGGTATACACCGCAGCGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGCGCGGTTTAACAGGAACTGTGCCAGCAACGCTACCGGACGACCGGT  >  NC_000913/4484235‑4484508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A