Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	138	91.1	3071990	99.2%	3047414	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,509,987	A→G	pseudogene (184/330 nt)	yjhV →	KpLE2 phage‑like element; putative uncharacterized protein YjhV

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,509,987	0	A	G	100.0%	451.7 / NA	128	pseudogene (184/330 nt)	yjhV	KpLE2 phage‑like element; putative uncharacterized protein YjhV
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (65/63); total (65/63)

Only 100 of 129 total aligned reads displayed.

TCATCCAGCCGCAGTACAGGTCACGATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCACCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCGATCCATCAACT  >  NC_000913/4509851‑4510122

tcatcCAGCCGCAGTACAGGTCACGATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGccgcca                                                                                                                                      >  1:35390/1‑140 (MQ=255)

   tcCAGCCGCAGTACAGGTCACGATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGc                                                                                                                                   >  1:1160290/1‑140 (MQ=255)

      aGCCGCAGTACAGGTCACGATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTc                                                                                                                                >  2:1426473/1‑140 (MQ=255)

      aGCCGCAGTACAGGTCACGATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTc                                                                                                                                >  2:49042/1‑140 (MQ=255)

      aGCCGCAGTACAGGTCACGATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTc                                                                                                                                >  1:245862/1‑140 (MQ=255)

       gCCGCAGTACAGGTCACGATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGTTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTcg                                                                                                                               <  1:854716/140‑1 (MQ=255)

       gCCGCAGTACAGGTCACGATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTcg                                                                                                                               >  1:953548/1‑140 (MQ=255)

        ccGCAGTACAGGTCACGATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTcgc                                                                                                                              >  1:463563/1‑140 (MQ=255)

        ccGCAGTACAGGTCACGATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTcgc                                                                                                                              <  2:1160290/140‑1 (MQ=255)

        ccGCAGTACAGGTCACGATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTcgc                                                                                                                              >  1:1500545/1‑140 (MQ=255)

         cGCAGTACAGGTCACGATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTcgcg                                                                                                                             >  1:1429232/1‑140 (MQ=255)

                   gTCACGATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCctct                                                                                                                   >  2:1483192/1‑140 (MQ=255)

                   gTCACGATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCctct                                                                                                                   >  1:379394/1‑140 (MQ=255)

                     cACGATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTgg                                                                                                                 >  1:404677/1‑140 (MQ=255)

                        gATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGa                                                                                                              >  1:343004/1‑140 (MQ=255)

                        gATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGa                                                                                                              >  2:478995/1‑140 (MQ=255)

                        gATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGa                                                                                                              >  2:1162929/1‑140 (MQ=255)

                           gACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGaaaa                                                                                                           <  2:379394/140‑1 (MQ=255)

                             ctctGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAg                                                                                                         >  1:336009/1‑140 (MQ=255)

                                tGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGga                                                                                                      <  2:35390/140‑1 (MQ=255)

                                 ggTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGgag                                                                                                     <  1:49042/140‑1 (MQ=255)

                                 ggTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGgag                                                                                                     <  2:779632/140‑1 (MQ=255)

                                 ggTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGgag                                                                                                     <  2:855596/140‑1 (MQ=255)

                                  gTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGgaga                                                                                                    >  2:715604/1‑140 (MQ=255)

                                  gTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGgaga                                                                                                    >  2:972782/1‑140 (MQ=255)

                                  gTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGAAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGgaga                                                                                                    >  1:1376184/1‑140 (MQ=255)

                                      aTGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGa                                                                                                <  1:972782/140‑1 (MQ=255)

                                      aTGATACCGGCTTTGACCCCGTA‑TTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGAc                                                                                               <  2:448895/140‑1 (MQ=255)

                                       tGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGAc                                                                                               >  2:746216/1‑140 (MQ=255)

                                       tGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGAc                                                                                               >  2:1434284/1‑140 (MQ=255)

                                            ccGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGcc                                                                                          >  1:738355/1‑140 (MQ=255)

                                            ccGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGcc                                                                                          >  1:1307548/1‑140 (MQ=255)

                                               gCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGt                                                                                       <  2:404677/140‑1 (MQ=255)

                                                 tttGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCt                                                                                     <  1:189266/140‑1 (MQ=255)

                                                    gACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGcc                                                                                  >  2:967358/1‑140 (MQ=255)

                                                      ccccGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCtt                                                                                <  1:1434284/140‑1 (MQ=255)

                                                       cccGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTc                                                                               >  2:131996/1‑140 (MQ=255)

                                                         cGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCAc                                                                             >  2:778814/1‑140 (MQ=255)

                                                          gTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACt                                                                            >  1:733081/1‑140 (MQ=255)

                                                           tATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACtt                                                                           >  1:912980/1‑140 (MQ=255)

                                                               ttCCGGCTCTATCGCTGAATCATGGCATCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATg                                                                       >  1:133950/1‑140 (MQ=255)

                                                                tCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGc                                                                      <  2:1307548/140‑1 (MQ=255)

                                                                tCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGc                                                                      >  2:359332/1‑140 (MQ=255)

                                                                tCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGc                                                                      <  2:912980/140‑1 (MQ=255)

                                                                   ggCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAg                                                                   <  1:363570/140‑1 (MQ=255)

                                                                   ggCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAg                                                                   <  2:245862/140‑1 (MQ=255)

                                                                   ggCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAg                                                                   <  2:343004/140‑1 (MQ=255)

                                                                    gCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGc                                                                  <  2:1500545/140‑1 (MQ=255)

                                                                     ctctATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCt                                                                 >  2:1337243/1‑140 (MQ=255)

                                                                        tATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCg                                                              >  1:941588/1‑140 (MQ=255)

                                                                         aTCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCgg                                                             <  2:953548/140‑1 (MQ=255)

                                                                         aTCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCgg                                                             <  1:1337243/140‑1 (MQ=255)

                                                                          tCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGt                                                            >  1:1103242/1‑140 (MQ=255)

                                                                           cGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTa                                                           <  1:478995/140‑1 (MQ=255)

                                                                             cTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAg                                                         <  1:1327392/140‑1 (MQ=255)

                                                                             cTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAg                                                         <  1:989233/140‑1 (MQ=255)

                                                                             cTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAg                                                         <  1:1162929/140‑1 (MQ=255)

                                                                             cTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAg                                                         <  2:1329657/140‑1 (MQ=255)

                                                                             cTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGAAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAg                                                         <  2:1376184/140‑1 (MQ=255)

                                                                                         gTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGaca                                             <  1:715604/140‑1 (MQ=255)

                                                                                          tCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGacac                                            >  2:505812/1‑140 (MQ=255)

                                                                                            agcagcCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCg                                          >  2:1158370/1‑140 (MQ=255)

                                                                                            agcagcCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCg                                          >  2:290552/1‑140 (MQ=255)

                                                                                            agcagcCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCG‑AAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGa                                         <  1:1211837/140‑1 (MQ=255)

                                                                                               agcCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACt                                       <  1:1464264/140‑1 (MQ=255)

                                                                                               agcCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACt                                       <  2:216950/140‑1 (MQ=255)

                                                                                                         acCATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGata                             <  1:1483192/140‑1 (MQ=255)

                                                                                                           cATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATc                           >  1:1011215/1‑140 (MQ=255)

                                                                                                           cATCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATc                           >  1:1378991/1‑140 (MQ=255)

                                                                                                            aTCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCa                          >  2:132336/1‑140 (MQ=255)

                                                                                                            aTCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCa                          <  1:1426473/140‑1 (MQ=255)

                                                                                                             tCCTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCAt                         <  2:356695/140‑1 (MQ=255)

                                                                                                              ccTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCAtt                        <  1:1516443/140‑1 (MQ=255)

                                                                                                              ccTATTGTTGTGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCAtt                        >  1:433726/1‑140 (MQ=255)

                                                                                                                   tgttgtGACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATaa                   >  1:373294/1‑140 (MQ=255)

                                                                                                                     ttgtGACTGGGAGGCTGCCGCCATGCTTCACGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACa                 >  2:1256507/1‑140 (MQ=255)

                                                                                                                       gtgACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAAt               >  1:1103414/1‑140 (MQ=255)

                                                                                                                        tgACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATc              >  2:504119/1‑140 (MQ=255)

                                                                                                                        tgACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATc              >  2:674411/1‑140 (MQ=255)

                                                                                                                        tgACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATc              <  2:733081/140‑1 (MQ=255)

                                                                                                                         gACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCg             <  1:1375719/140‑1 (MQ=255)

                                                                                                                         gACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCg             <  1:132336/140‑1 (MQ=255)

                                                                                                                         gACTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCg             <  1:359332/140‑1 (MQ=255)

                                                                                                                          aCTGGGAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCGa            >  2:1455765/1‑140 (MQ=255)

                                                                                                                             gggAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCGATcc         <  1:505812/140‑1 (MQ=255)

                                                                                                                             gggAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCGATcc         <  1:1158370/140‑1 (MQ=255)

                                                                                                                              ggAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATc              <  2:332598/134‑1 (MQ=255)

                                                                                                                              ggAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATc              >  1:332598/1‑134 (MQ=255)

                                                                                                                              ggAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCGATCCa        >  2:1036804/1‑140 (MQ=255)

                                                                                                                               gAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAAt               >  1:853493/1‑132 (MQ=255)

                                                                                                                               gAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCGATCCAt       <  2:1083254/140‑1 (MQ=255)

                                                                                                                               gAGGCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCGATCCAt       >  2:899092/1‑140 (MQ=255)

                                                                                                                                  gCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCGATCCATCaa    <  1:290552/140‑1 (MQ=255)

                                                                                                                                  gCTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCGATCCATCaa    <  1:1129803/140‑1 (MQ=255)

                                                                                                                                  gCTGCCGCCATGCTTCACGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCGATCCATCaa    <  1:1256507/140‑1 (MQ=255)

                                                                                                                                   cTGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCGATCCATCAAc   <  1:1231196/140‑1 (MQ=255)

                                                                                                                                    tGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAGGATATCATTGATAACAATCg             <  1:784132/129‑1 (MQ=255)

                                                                                                                                    tGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCg             >  2:784132/1‑129 (MQ=255)

                                                                                                                                    tGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCGATCCATCAACt  >  2:312745/1‑140 (MQ=255)

                                                                                                                                    tGCCGCCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCGATCCATCAACt  <  1:778814/140‑1 (MQ=255)

TCATCCAGCCGCAGTACAGGTCACGATGACTCTGGTTAATGATACCGGCTTTGACCCCGTATTTTCCGGCTCTATCGCTGAATCATGGCGTCAGCAGCCGTGCACACCATCCTATTGTTGTGACTGGGAGGCTGCCACCATGCTTCGCGCTTTCCCTCTGGCGAAAAAGGGAGAAGGACGGGCCCGTCTGCCTTCACTTTATGCCAGCTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCGATCCATCAACT  >  NC_000913/4509851‑4510122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A