Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 172 67.8 2301510 98.9% 2276193 138.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,789,174 C→T R64C (CGT→TGT)  csiD → PF08943 family protein CsiD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,789,1740CT100.0% 249.9 / NA 72R64C (CGT→TGT) csiDPF08943 family protein CsiD
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (33/39);  total (33/39)

TAGCGGATTCACCCTCACCCCGTCGGCGCAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGCGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAATGCGGTGGGTGTCGATGATGTGAAGCAAGCGG  >  NC_000913/2789038‑2789309
                                                                                                                                        |                                                                                                                                       
taGCGGATTCACCCTCACCCCGTCGGCGCAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGtt                                                                                                                                      >  1:442389/1‑140 (MQ=255)
     gATTCACCCTCACCCCGTCGGCGCAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGtttt                                                                                                                                    >  1:299293/1‑137 (MQ=255)
     gATTCACCCTCACCCCGTCGGCGCAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGtttt                                                                                                                                    <  2:299293/137‑1 (MQ=255)
     gATTCACCCTCACCCCGTCGGCGCAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCgg                                                                                                                                 >  1:1071807/1‑140 (MQ=255)
     gATTCACCCTCACCCCGTCGGCGCAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCgg                                                                                                                                 >  1:1122285/1‑140 (MQ=255)
      aTTCACCCTCACCCCGTCGGCGCAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGCGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCggg                                                                                                                                >  2:847549/1‑140 (MQ=255)
      aTTCACCCTCACCCCGTCGGCGCAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCggg                                                                                                                                >  2:629200/1‑140 (MQ=255)
        tcaccctcacccCGTCGGCGCAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGCTTCTGTGTTTTCGGGTa                                                                                                                              >  1:742546/1‑140 (MQ=255)
         caccctcacccCGTCGGCGCAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAg                                                                                                                             <  1:1110745/140‑1 (MQ=255)
            cctcacccCGTCGGCGCAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCa                                                                                                                          <  2:8808/140‑1 (MQ=255)
                    cGTCGGCGCAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCtt                                                                                                                  <  2:164945/140‑1 (MQ=255)
                     gTCGGCGCAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTg                                                                                                                 >  2:3005/1‑140 (MQ=255)
                        ggCGCAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACg                                                                                                              >  1:899641/1‑140 (MQ=255)
                           gcAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATc                                                                                                           <  2:742546/140‑1 (MQ=255)
                            cAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCt                                                                                                          <  2:619620/140‑1 (MQ=255)
                            cAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCt                                                                                                          <  2:333374/140‑1 (MQ=255)
                                 cccGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTAtgtg                                                                                                     <  2:621244/140‑1 (MQ=255)
                                      gTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAAc                                                                                                <  2:1122285/140‑1 (MQ=255)
                                      gTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAAc                                                                                                <  2:1071807/140‑1 (MQ=255)
                                         tgctgGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGGGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAg                                                                                             >  2:5470/1‑140 (MQ=255)
                                         tgctgGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAg                                                                                             >  2:263324/1‑140 (MQ=255)
                                         tgctgGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGG‑CCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGc                                                                                            <  1:276167/140‑1 (MQ=255)
                                           ctgGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCt                                                                                           >  2:714116/1‑140 (MQ=255)
                                                aCTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAAc                                                                                      >  1:817631/1‑140 (MQ=255)
                                                    aCCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAAc                                                                                                <  2:112570/126‑1 (MQ=255)
                                                    aCCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAAc                                                                                                >  1:112570/1‑126 (MQ=255)
                                                    aCCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCAtt                                                                                  >  1:390877/1‑140 (MQ=255)
                                                     ccTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAAc                                                                                      <  1:529050/135‑1 (MQ=255)
                                                     ccTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAAc                                                                                      >  2:529050/1‑135 (MQ=255)
                                                         cACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGt                                                                             >  1:417890/1‑140 (MQ=255)
                                                           ccGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTg                                                                           <  2:956531/140‑1 (MQ=255)
                                                             gAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGaa                                                                         <  2:417890/140‑1 (MQ=255)
                                                              aaCAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAg                                                                        >  1:912306/1‑140 (MQ=255)
                                                               aCAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGa                                                                       <  1:714116/140‑1 (MQ=255)
                                                               aCAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGa                                                                       >  2:782312/1‑140 (MQ=255)
                                                                cAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGATGCAACCATTGCTGTTGAAGAc                                                                      >  2:858021/1‑140 (MQ=255)
                                                                 aGACGACCAAACAGTTTCTTGGGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACg                                                                     <  1:5470/140‑1 (MQ=255)
                                                                 aGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACg                                                                     <  1:1108607/140‑1 (MQ=255)
                                                                   acgacCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGtt                                                                   >  1:1085131/1‑140 (MQ=255)
                                                                    cgacCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTg                                                                  >  2:470122/1‑140 (MQ=255)
                                                                          aaCAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAAc                                                            <  2:899641/140‑1 (MQ=255)
                                                                          aaCAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAAc                                                            <  1:470122/140‑1 (MQ=255)
                                                                               tttCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCgcgc                                                       <  2:912306/140‑1 (MQ=255)
                                                                                 tCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTg                                                     >  2:449122/1‑140 (MQ=255)
                                                                                  cTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGa                                                    <  1:449122/140‑1 (MQ=255)
                                                                                     gAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAgg                                                 <  2:8545/140‑1 (MQ=255)
                                                                                       gCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTg                                               <  1:121021/140‑1 (MQ=255)
                                                                                         aGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGGCGTTGCTAAACCGCGCTg                                                     >  1:805256/1‑132 (MQ=255)
                                                                                         aGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTg                                                     <  2:805256/132‑1 (MQ=255)
                                                                                          ggTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCgt                                            <  2:817631/140‑1 (MQ=255)
                                                                                           gTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCgtt                                           >  1:690551/1‑140 (MQ=255)
                                                                                           gTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCgtt                                           >  1:857571/1‑140 (MQ=255)
                                                                                                cGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGa                                      <  1:782312/140‑1 (MQ=255)
                                                                                                 gAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGAt                                     <  2:390877/140‑1 (MQ=255)
                                                                                                     ggCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTg                                               <  2:921102/126‑1 (MQ=255)
                                                                                                     ggCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTg                                               >  1:921102/1‑126 (MQ=255)
                                                                                                     ggCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAAt                                 >  1:1123622/1‑140 (MQ=255)
                                                                                                     ggCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAAt                                 >  2:250394/1‑140 (MQ=255)
                                                                                                        ccGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAATGCg                              <  2:1085131/140‑1 (MQ=255)
                                                                                                        ccGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAATGCg                              <  1:162971/140‑1 (MQ=255)
                                                                                                         cGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAATGCgg                             <  2:690551/140‑1 (MQ=255)
                                                                                                         cGTGCAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAATGCgg                             <  1:847549/140‑1 (MQ=255)
                                                                                                             cAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAATGCggtggg                         <  2:1123622/140‑1 (MQ=255)
                                                                                                             cAGGCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAATGCggtggg                         <  1:629200/140‑1 (MQ=255)
                                                                                                               ggCGCTGGAGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAATGCggtgggtg                       <  1:250394/140‑1 (MQ=255)
                                                                                                                       aGTACAAATCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAATGCGGTGGGTGTCgatgat               >  1:443912/1‑140 (MQ=255)
                                                                                                                              aTCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAATGCGGTGGGTGTCGATGATGTGaagc        >  1:1141821/1‑140 (MQ=255)
                                                                                                                               tCGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAATGCGGTGGGTGTCGATGATGTGaagca       <  2:957543/140‑1 (MQ=255)
                                                                                                                                cGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAATGCGGTGGGTGTCGATGATGTGaagcaa      <  2:442389/140‑1 (MQ=255)
                                                                                                                                cGTTTCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAATGCGGTGGGTGTCGATGATGTGaagcaa      >  2:217225/1‑140 (MQ=255)
                                                                                                                                   ttCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAATGCGGTGGGTGTCGATGATGTGAAGCAAGCg   >  2:1051085/1‑140 (MQ=255)
                                                                                                                                   ttCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAATGCGGTGGATGTCGATGATGTGAAGCAAGCg   >  1:812125/1‑140 (MQ=255)
                                                                                                                                    tCTGTGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAATGCGGTGGGTGTCGATGATGTGAAGCAAGCgg  <  1:1051085/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
TAGCGGATTCACCCTCACCCCGTCGGCGCAATCCCCGCGTCTGCTGGAACTCACCTTCACCGAACAGACGACCAAACAGTTTCTTGAGCAGGTTGCCGAGTGGCCCGTGCAGGCGCTGGAGTACAAATCGTTTCTGCGTTTTCGGGTAGCCAAAATTCTTGACGATCTATGTGCGAACCAGCTGCAACCATTGCTGTTGAAGACGTTGCTAAACCGCGCTGAAGGTGCGTTGTTGATCAATGCGGTGGGTGTCGATGATGTGAAGCAAGCGG  >  NC_000913/2789038‑2789309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A