Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 172 67.8 2301510 98.9% 2276193 138.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,999,175 T→C L239L (CTA→CTG)  ygeR ← LysM domain‑containing putative peptidase lipoprotein YgeR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,999,1750TC100.0% 315.2 / NA 90L239L (CTA→CTG) ygeRLysM domain‑containing putative peptidase lipoprotein YgeR
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (40/50);  total (40/50)

ACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTA  >  NC_000913/2999039‑2999310
                                                                                                                                        |                                                                                                                                       
aCCATTGAACTACGTCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGc                                                                                                                                      <  2:706905/140‑1 (MQ=255)
       aaCTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCg                                                                                                                                     >  1:899795/1‑134 (MQ=255)
       aaCTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCg                                                                                                                                     <  2:899795/134‑1 (MQ=255)
       aaCTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCaa                                                                                                                               >  1:154195/1‑140 (MQ=255)
       aaCTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCaa                                                                                                                               >  2:73765/1‑140 (MQ=255)
        aCTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAAt                                                                                                                              <  2:942031/140‑1 (MQ=255)
           aCGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGc                                                                                                                           >  1:304065/1‑140 (MQ=255)
           aCGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGc                                                                                                                           >  1:1067670/1‑140 (MQ=255)
           aCGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGc                                                                                                                           >  1:736270/1‑140 (MQ=255)
           aCGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGc                                                                                                                           >  1:726405/1‑140 (MQ=255)
             gCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCg                                                                                                                         <  1:884748/140‑1 (MQ=255)
               ccGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGtt                                                                                                                       >  1:301964/1‑140 (MQ=255)
                 gCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTATCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGc                                                                                                                     <  2:1067670/140‑1 (MQ=255)
                 gCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGc                                                                                                                     <  2:1132812/140‑1 (MQ=255)
                 gCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGc                                                                                                                     >  1:1064580/1‑140 (MQ=255)
                 gCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGc                                                                                                                     >  2:360041/1‑140 (MQ=255)
                  cTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCa                                                                                                                    <  1:73765/140‑1 (MQ=255)
                  cTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCa                                                                                                                    <  2:546313/140‑1 (MQ=255)
                   ttCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCAc                                                                                                                   >  1:1122328/1‑140 (MQ=255)
                       agaTGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTa                                                                                                               <  2:736270/140‑1 (MQ=255)
                         aTGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAAc                                                                                                             <  1:34930/140‑1 (MQ=255)
                            cGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGaa                                                                                                          <  2:361776/140‑1 (MQ=255)
                               aaGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCt                                                                                                       <  1:204804/140‑1 (MQ=255)
                                  gCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGa                                                                                                    >  1:410281/1‑140 (MQ=255)
                                  gCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGa                                                                                                    <  2:726405/140‑1 (MQ=255)
                                      tataAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATg                                                                                                >  1:288629/1‑140 (MQ=255)
                                      tataAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATg                                                                                                >  1:503695/1‑140 (MQ=255)
                                       ataAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGc                                                                                               >  1:844586/1‑140 (MQ=255)
                                           aCCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGc                                                                                           >  2:11523/1‑140 (MQ=255)
                                           aCCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGc                                                                                           <  2:3817/140‑1 (MQ=255)
                                           aCCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGc                                                                                           <  2:341323/140‑1 (MQ=255)
                                                aCGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACa                                                                                      >  2:847145/1‑140 (MQ=255)
                                                aCGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACa                                                                                      >  2:98855/1‑140 (MQ=255)
                                                aCGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACa                                                                                      >  2:4950/1‑140 (MQ=255)
                                                aCGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACa                                                                                      >  2:647865/1‑140 (MQ=255)
                                                  gCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCCCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGa                                                                                    <  1:95953/140‑1 (MQ=255)
                                                       ccTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGGAATGCAGGCGAACAGATGCCg                                                                               <  2:467925/140‑1 (MQ=255)
                                                            gCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATcc                                                                          <  2:288629/140‑1 (MQ=255)
                                                              aaGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGt                                                                        <  1:98855/140‑1 (MQ=255)
                                                              aaGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGt                                                                        <  2:205888/140‑1 (MQ=255)
                                                              aaGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGt                                                                        <  1:405681/140‑1 (MQ=255)
                                                               aGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTg                                                                       <  1:11523/140‑1 (MQ=255)
                                                               aGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTg                                                                       <  2:894986/140‑1 (MQ=255)
                                                                gTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATcc                                                                          <  1:1123828/136‑1 (MQ=255)
                                                                gTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATcc                                                                          >  2:1123828/1‑136 (MQ=255)
                                                                gTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGc                                                                      >  2:418760/1‑140 (MQ=255)
                                                                gTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGc                                                                      >  2:839981/1‑140 (MQ=255)
                                                                gTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGc                                                                      >  1:816475/1‑140 (MQ=255)
                                                                 tGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTg                                                                       <  1:832400/138‑1 (MQ=255)
                                                                 tGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTg                                                                       >  2:832400/1‑138 (MQ=255)
                                                                 tGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCt                                                                     <  2:503695/140‑1 (MQ=255)
                                                                  gCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTg                                                                       <  2:469280/137‑1 (MQ=255)
                                                                  gCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTg                                                                       >  1:469280/1‑137 (MQ=255)
                                                                  gCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTc                                                                    >  2:686336/1‑140 (MQ=255)
                                                                  gCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTc                                                                    >  1:918813/1‑140 (MQ=255)
                                                                  gCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTc                                                                    >  1:366841/1‑140 (MQ=255)
                                                                  gCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTc                                                                    >  1:703343/1‑140 (MQ=255)
                                                                     aCGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTcccc                                                                 <  1:1031637/140‑1 (MQ=255)
                                                                      cGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCa                                                                >  1:169188/1‑140 (MQ=255)
                                                                       gctgctGACTGCTGATTAATACGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCAt                                                               >  2:736541/1‑140 (MQ=255)
                                                                           ctgactgctgaTTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTg                                                           >  2:290463/1‑140 (MQ=255)
                                                                                   tgaTTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGAtttt                                                   >  1:245083/1‑140 (MQ=255)
                                                                                   tgaTTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGAtttt                                                   >  2:1051253/1‑140 (MQ=255)
                                                                                        aaTTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGcc                                              <  2:844586/140‑1 (MQ=255)
                                                                                        aaTTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGcc                                              <  2:169188/140‑1 (MQ=255)
                                                                                        aaTTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGcc                                              <  1:117699/140‑1 (MQ=255)
                                                                                         aTTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGccc                                             <  2:304065/140‑1 (MQ=255)
                                                                                          ttCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCa                                            <  2:1122328/140‑1 (MQ=255)
                                                                                               cATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGcc                                              <  1:223932/133‑1 (MQ=255)
                                                                                               cATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGcc                                              >  2:223932/1‑133 (MQ=255)
                                                                                               cATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCtt                                       >  2:1130325/1‑140 (MQ=255)
                                                                                                     cATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCt                                 <  2:627932/140‑1 (MQ=255)
                                                                                                     cATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCt                                 <  1:54527/140‑1 (MQ=255)
                                                                                                     cATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCt                                 <  1:1051253/140‑1 (MQ=255)
                                                                                                          tGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGcc                            <  2:703343/140‑1 (MQ=255)
                                                                                                          tGGCTTGCTGCCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGcc                            <  1:418760/140‑1 (MQ=255)
                                                                                                               tgctgcCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCatta                       <  1:839981/140‑1 (MQ=255)
                                                                                                               tgctgcCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCatta                       <  2:366841/140‑1 (MQ=255)
                                                                                                                gctgcCCTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCattat                      <  1:736541/140‑1 (MQ=255)
                                                                                                                    cccTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCATTTTTTAc                  <  2:1064580/140‑1 (MQ=255)
                                                                                                                    cccTGAGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTAc                  <  2:245083/140‑1 (MQ=255)
                                                                                                                         aGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCa             <  2:533005/140‑1 (MQ=255)
                                                                                                                         aGGCGGCAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCa             <  2:301964/140‑1 (MQ=255)
                                                                                                                           gcggcAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATc           >  1:953282/1‑140 (MQ=255)
                                                                                                                           gcggcAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATc           <  2:884102/140‑1 (MQ=255)
                                                                                                                             ggcAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTTGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgt         <  2:648900/140‑1 (MQ=255)
                                                                                                                             ggcAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgt         <  1:290463/140‑1 (MQ=255)
                                                                                                                              gcAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgtg        >  2:1020454/1‑140 (MQ=255)
                                                                                                                               cAAGTAACGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgtgt       >  2:269476/1‑140 (MQ=255)
                                                                                                                                    aaCGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTa  <  2:918813/140‑1 (MQ=255)
                                                                                                                                    aaCGCAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTa  <  1:1020454/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
ACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTA  >  NC_000913/2999039‑2999310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A