Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 172 67.8 2301510 98.9% 2276193 138.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,479,997 A→G V204A (GTA→GCA)  kefB ← K(+) : H(+) antiporter KefB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,479,9970AG100.0% 245.5 / NA 72V204A (GTA→GCA) kefBK(+) : H(+) antiporter KefB
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (37/35);  total (37/35)

GCACGCCCGCAATAAATGTACCGAGCGCCATCGACAGCCCCAGCGCATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATACCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGCACTAACGCCAGTGCTGGGATTACTGC  >  NC_000913/3479863‑3480133
                                                                                                                                      |                                                                                                                                        
gcaCGCCCGCAATAAATGTACCGAGCGCCATCGACAGCCCCAGCGCATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGa                                                                                                                                     <  2:947649/140‑1 (MQ=255)
gcaCGCCCGCAATAAATGTACCGAGCGCCATCGACAGCCCCAGCGCATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGa                                                                                                                                     <  1:996787/140‑1 (MQ=255)
 caCGCCCGCAATAAATGTACCGAGCGCCATCGACAGCCCCAGCGCATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGAc                                                                                                                                    <  1:1053252/140‑1 (MQ=255)
   cGCCCGCAATAAATGTACCGAGCGCCATCGACAGCCCCAGCGCATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGc                                                                                                                                  <  2:729890/140‑1 (MQ=255)
     cccGCAATAAATGTACCGAGCGCCATCGACAGCCCCAGCGCATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAg                                                                                                                                >  1:553931/1‑140 (MQ=255)
          aaTAAATGTACCGAGCGCCATCGACAGCCCCAGCGCATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTaaaa                                                                                                                           >  1:548934/1‑139 (MQ=255)
                tGTACCGAGCGCCATCGACAGCCCCAGCGCATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTaaa                                                                                                                            >  1:970998/1‑133 (MQ=255)
                tGTACCGAGCGCCATCGACAGCCCCAGCGCATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTaaa                                                                                                                            <  2:970998/133‑1 (MQ=255)
                tGTACCGAGCGCCATCGACAGCCCCAGCGCATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGcc                                                                                                                     <  1:792423/140‑1 (MQ=255)
                    ccGAGCGCCATCGACAGCCCCAGCGCATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAgc                                                                                                                        <  2:751960/133‑1 (MQ=255)
                    ccGAGCGCCATCGACAGCCCCAGCGCATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACCCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAgc                                                                                                                        >  1:751960/1‑133 (MQ=255)
                     cGAGCGCCATCGACAGCCCCAGCGCATCCATAAGCAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCccacca                                                                                                                <  2:479008/140‑1 (MQ=255)
                       aGCGCCATCGACAGCCCCAGCGCATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAAt                                                                                                              >  2:199869/1‑140 (MQ=255)
                       aGCGCCATCGACAGCCCCAGCGCATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAACGGAATGCCGGACGCAGTAAAAAGCGCCCACCaaa                                                                                                              >  2:287748/1‑139 (MQ=255)
                        gcgcCATCGACAGCCCCAGCGCATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATc                                                                                                             >  1:1093070/1‑140 (MQ=255)
                           ccATCGACAGCCCCAGCGCATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGc                                                                                                          <  2:548934/140‑1 (MQ=255)
                                            gcATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAg                                                                                         <  2:1093070/140‑1 (MQ=255)
                                                ccATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCAcc                                                                                     <  2:1146889/140‑1 (MQ=255)
                                                   tAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTc                                                                                  >  1:713720/1‑140 (MQ=255)
                                                     aaCAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCAt                                                                                <  2:454618/140‑1 (MQ=255)
                                                      aCAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATg                                                                               >  1:276370/1‑140 (MQ=255)
                                                        aaTGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGcc                                                                             <  2:553931/140‑1 (MQ=255)
                                                        aaTGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGcc                                                                             <  2:1075622/140‑1 (MQ=255)
                                                          tGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGcc                                                                             <  1:556811/138‑1 (MQ=255)
                                                          tGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGcc                                                                             <  2:1090523/138‑1 (MQ=255)
                                                          tGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGcc                                                                             >  2:468724/1‑138 (MQ=255)
                                                          tGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGcc                                                                             <  1:468724/138‑1 (MQ=255)
                                                          tGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGcc                                                                             >  1:1090523/1‑138 (MQ=255)
                                                          tGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGcc                                                                             >  2:556811/1‑138 (MQ=255)
                                                          tGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGa                                                                           >  2:655126/1‑140 (MQ=255)
                                                          tGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGa                                                                           >  1:597217/1‑140 (MQ=255)
                                                          tGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGa                                                                           >  1:1111202/1‑140 (MQ=255)
                                                          tGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGa                                                                           >  1:808108/1‑140 (MQ=255)
                                                              gAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCGGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCtt                                                                       >  1:812340/1‑140 (MQ=255)
                                                                aCCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCa                                                                     <  2:2782/140‑1 (MQ=255)
                                                                 cccAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCAt                                                                    >  1:735340/1‑140 (MQ=255)
                                                                 cccAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCAt                                                                    <  1:382653/140‑1 (MQ=255)
                                                                 cccAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCAt                                                                    >  2:628817/1‑140 (MQ=255)
                                                                  ccAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATc                                                                   <  1:199869/140‑1 (MQ=255)
                                                                      cacCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGt                                                               >  1:623962/1‑140 (MQ=255)
                                                                      cacCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGGAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGt                                                               >  1:691705/1‑140 (MQ=255)
                                                                           gcagcagcGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGaaa                                                          >  1:1005131/1‑140 (MQ=255)
                                                                           gcagcagcGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGaaa                                                          >  2:554575/1‑140 (MQ=255)
                                                                              gcagcGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGt                                                       >  1:862609/1‑140 (MQ=255)
                                                                                agcGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTTATCCAGTCGAAATGTTc                                                     <  1:175259/140‑1 (MQ=255)
                                                                                  cGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGt                                                   <  1:519590/140‑1 (MQ=255)
                                                                                    tCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCt                                                 >  2:697668/1‑140 (MQ=255)
                                                                                    tCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCt                                                 >  2:283644/1‑140 (MQ=255)
                                                                                     cgcgGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTg                                                >  1:174130/1‑140 (MQ=255)
                                                                                        ggcggTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCg                                             <  1:287748/140‑1 (MQ=255)
                                                                                          cggTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGAc                                           <  2:114721/140‑1 (MQ=255)
                                                                                                acacTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCGGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGcc                                     <  2:812340/140‑1 (MQ=255)
                                                                                                acacTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGcc                                     <  2:1111202/140‑1 (MQ=255)
                                                                                                      cccGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCaacaac                               >  2:871643/1‑140 (MQ=255)
                                                                                                      cccGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCaacaac                               <  2:174130/140‑1 (MQ=255)
                                                                                                      cccGCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCaacaac                               >  1:115134/1‑140 (MQ=255)
                                                                                                         gCACGCCAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGc                            >  1:471461/1‑140 (MQ=255)
                                                                                                              ccAGAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGCACTaa                       >  1:779912/1‑140 (MQ=255)
                                                                                                                 gAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGCACTAACGc                    <  2:1005131/140‑1 (MQ=255)
                                                                                                                 gAAGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGCACTAACGc                    >  1:11836/1‑140 (MQ=255)
                                                                                                                  aaGCTGCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGCACTAACGcc                   <  2:713720/140‑1 (MQ=255)
                                                                                                                       gCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGCACTAACGc                    >  1:1079906/1‑134 (MQ=255)
                                                                                                                       gCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGCACTAACGc                    <  2:1079906/134‑1 (MQ=255)
                                                                                                                       gCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGCACTAACGCCAGTGc              >  1:212747/1‑140 (MQ=255)
                                                                                                                       gCAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGCACTAACGCCAGTGc              <  2:808108/140‑1 (MQ=255)
                                                                                                                        cAATAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGCACTAACGCCAGTGCt             <  2:735340/140‑1 (MQ=255)
                                                                                                                         aaTAAAGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGCACTAACGCCAGTGCTg            >  2:1023310/1‑140 (MQ=255)
                                                                                                                             aaGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGCACTAACGCCAGTGCTGGGAt        <  2:779912/140‑1 (MQ=255)
                                                                                                                             aaGCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGCACTAACGCCAGTGCTGGGAt        <  1:554575/140‑1 (MQ=255)
                                                                                                                               gCGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGCACTAACGCCAGTGCTGGGATTa      >  2:984623/1‑140 (MQ=255)
                                                                                                                                cGGAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCACGCCAACAACGGCACTAACGCCAGTGCTGGGATTAc     >  1:415390/1‑140 (MQ=255)
                                                                                                                                  gAATGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGCACTAACGCCAGTGCTGGGATTACTg   >  2:254016/1‑140 (MQ=255)
                                                                                                                                   aaTGCCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGCACTAACGCCAGTGCTGGGATTACTGc  <  1:1023310/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                        
GCACGCCCGCAATAAATGTACCGAGCGCCATCGACAGCCCCAGCGCATCCATAAACAATGCGGAACCCAACACCAGCAGCAGCGTCGCGGCGGTGAACACTTCCCGCACGCCAGAAGCTGCAATAAAGCGGAATACCGGACGCAGTAAATAGCGCCCACCAATCAGCATGCCGACAAACGCCAGCACCTTCATGCCGACCTTCATCCAGTCGAAATGTTCGTCTGCCGACCCCGCCAACAACGGCACTAACGCCAGTGCTGGGATTACTGC  >  NC_000913/3479863‑3480133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A