Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	172	67.8	2301510	98.9%	2276193	138.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,551,336	G→A	intergenic (‑40/‑300)	gntP ← / → uxuA	fructuronate transporter/D‑mannonate dehydratase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,551,336	0	G	A	100.0%	277.7 / NA	78	intergenic (‑40/‑300)	gntP/uxuA	fructuronate transporter/D‑mannonate dehydratase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (38/40); total (38/40)

ACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGGCGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAAC  >  NC_000913/4551203‑4551467

acaaAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGatat                                                                                                                               <  1:93304/140‑1 (MQ=255)

              gaattgaTTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTgg                                                                                                                 >  2:882630/1‑140 (MQ=255)

               aattgaTTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGt                                                                                                                >  2:447498/1‑140 (MQ=255)

               aattgaTTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGt                                                                                                                >  1:113078/1‑140 (MQ=255)

                attgaTTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTc                                                                                                               <  1:438047/140‑1 (MQ=255)

                      tttGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCAt                                                                                                         <  2:590425/140‑1 (MQ=255)

                       ttGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCAtt                                                                                                        >  2:295019/1‑140 (MQ=255)

                         gAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACTTGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCAttgt                                                                                                      <  1:768601/140‑1 (MQ=255)

                          aaCTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCAttgtt                                                                                                     <  1:1137918/140‑1 (MQ=255)

                          aaCTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCAttgtt                                                                                                     <  1:295019/140‑1 (MQ=255)

                              tCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGa                                                                                                 <  2:423116/140‑1 (MQ=255)

                               cAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGAt                                                                                                <  1:294392/140‑1 (MQ=255)

                                   ttCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAAt                                                                                            <  2:113078/140‑1 (MQ=255)

                                      aGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTc                                                                                         <  1:882630/140‑1 (MQ=255)

                                        tACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTcac                                                                                       <  2:770953/140‑1 (MQ=255)

                                         aCCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTca                                                                                        <  1:782399/138‑1 (MQ=255)

                                         aCCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTca                                                                                        >  2:782399/1‑138 (MQ=255)

                                           cAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATc                                                                                    <  1:916664/140‑1 (MQ=255)

                                           cAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATc                                                                                    <  2:161134/140‑1 (MQ=255)

                                             gCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCct                                                                                  <  1:551502/140‑1 (MQ=255)

                                             gCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCct                                                                                  >  2:195895/1‑140 (MQ=255)

                                              cATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCg                                                                                                  <  1:793396/123‑1 (MQ=255)

                                              cATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCg                                                                                                  >  2:793396/1‑123 (MQ=255)

                                                tCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTg                                                                               >  2:485453/1‑140 (MQ=255)

                                                tCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTg                                                                               >  1:1136843/1‑140 (MQ=255)

                                                 cAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGa                                                                              <  2:1136843/140‑1 (MQ=255)

                                                  aGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAAt                                                                                            <  1:48028/125‑1 (MQ=255)

                                                  aGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAAt                                                                                            >  2:48028/1‑125 (MQ=255)

                                                  aGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGAt                                                                             >  2:284034/1‑140 (MQ=255)

                                                        aTGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGa                                                                              <  1:99804/133‑1 (MQ=255)

                                                        aTGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGa                                                                              >  2:99804/1‑133 (MQ=255)

                                                          gCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAAcc                                                                     >  2:1001411/1‑140 (MQ=255)

                                                             gAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCAt                                                                   <  2:1018251/139‑1 (MQ=255)

                                                             gAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCAt                                                                   >  1:1018251/1‑139 (MQ=255)

                                                              aaTACCACCCAGAGAATGTTAAGCACATGCGTAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCg                                                                 >  1:1115560/1‑140 (MQ=255)

                                                                   caccCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACTATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTAc                                                            >  2:24161/1‑140 (MQ=255)

                                                                          agaATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTtgc                                                     >  2:512124/1‑140 (MQ=255)

                                                                          agaATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTtgc                                                     >  1:245355/1‑140 (MQ=255)

                                                                                ttAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAAt                                               >  2:135231/1‑140 (MQ=255)

                                                                                    gCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTgc                                           >  2:873304/1‑140 (MQ=255)

                                                                                    gCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTgc                                           >  1:659442/1‑140 (MQ=255)

                                                                                      acaTGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTgcag                                         <  1:284034/140‑1 (MQ=255)

                                                                                        aTGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTgcagca                                       <  2:406727/140‑1 (MQ=255)

                                                                                        aTGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTgcagca                                       >  2:110165/1‑140 (MQ=255)

                                                                                        aTGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTgcagca                                       <  1:1053383/140‑1 (MQ=255)

                                                                                          gCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGcaac                                     <  1:51750/140‑1 (MQ=255)

                                                                                          gCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGcaac                                     <  2:313844/140‑1 (MQ=255)

                                                                                          gCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGcaac                                     >  1:182037/1‑140 (MQ=255)

                                                                                          gCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGcaac                                     <  1:135231/140‑1 (MQ=255)

                                                                                             tAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCaacaac                                  <  1:267184/140‑1 (MQ=255)

                                                                                               aCGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTgcag                                         <  1:1009112/131‑1 (MQ=255)

                                                                                               aCGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTgcag                                         >  2:1009112/1‑131 (MQ=255)

                                                                                               aCGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCa                                >  2:328265/1‑140 (MQ=255)

                                                                                                cGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCAt                               >  2:216539/1‑140 (MQ=255)

                                                                                                    ttaccttaccTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTg                                            >  2:69307/1‑123 (MQ=255)

                                                                                                    ttaccttaccTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTg                                            <  1:69307/123‑1 (MQ=255)

                                                                                                    ttaccttaccTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCaacaac                                  <  2:942787/133‑1 (MQ=255)

                                                                                                    ttaccttaccTGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCaacaac                                  >  1:942787/1‑133 (MQ=255)

                                                                                                      accttacctGGTTGAACCGTTGTTATTTTGGACGATACGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGt                         >  1:656466/1‑140 (MQ=255)

                                                                                                       ccttacctGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTg                        <  2:1115560/140‑1 (MQ=255)

                                                                                                       ccttacctGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTg                        <  1:195895/140‑1 (MQ=255)

                                                                                                          tacctGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGaaa                     >  1:443979/1‑140 (MQ=255)

                                                                                                            cctGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATgag                            <  1:699703/131‑1 (MQ=255)

                                                                                                            cctGGTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATgag                            >  2:699703/1‑131 (MQ=255)

                                                                                                                gTTGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTtg               >  2:201863/1‑140 (MQ=255)

                                                                                                                 ttGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATg                              >  2:132418/1‑124 (MQ=255)

                                                                                                                 ttGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATg                              <  1:132418/124‑1 (MQ=255)

                                                                                                                  tGAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTtgtg             <  1:216539/140‑1 (MQ=255)

                                                                                                                   gAACCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGa            <  2:443979/140‑1 (MQ=255)

                                                                                                                     aCCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGa                       <  2:1133289/127‑1 (MQ=255)

                                                                                                                     aCCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGa                       >  1:1133289/1‑127 (MQ=255)

                                                                                                                     aCCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTtgtg             >  2:731034/1‑137 (MQ=255)

                                                                                                                     aCCGTTGTTATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTtgtg             <  1:731034/137‑1 (MQ=255)

                                                                                                                         ttgttATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGt      <  1:303742/140‑1 (MQ=255)

                                                                                                                          tgttATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGtt     >  1:155779/1‑140 (MQ=255)

                                                                                                                          tgttATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGtt     >  1:412428/1‑140 (MQ=255)

                                                                                                                          tgttATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGtt     >  1:896842/1‑140 (MQ=255)

                                                                                                                             tATTTTGGACGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAAc  <  1:873304/140‑1 (MQ=255)

ACAAAGCCACCATTGAATTGATTTTGAACTTCAAATTCAGTACCAGCATCAGACCAATGCCGAATACCACCCAGAGAATGTTAAGCACATGCATAACGTTTTACCTTACCTGGTTGAACCGTTGTTATTTTGGGCGATATGTTATGTAAATTGGTCAACCATTGTTGCGATGAATGTCACATCCTCTGATCAATAACCATCGATTACCCTTTGCTGCAATTTGCAGCAACAACCATGAGAGTGAAATTCTTGTGATGTGGTTAAC  >  NC_000913/4551203‑4551467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A