Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 128 54.7 1845674 99.3% 1832754 139.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,857,096 Δ2,538 bp coding (4‑2541/2562 nt) mutS → DNA mismatch repair protein MutS

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2857096 2859633 2538 58 [0] [0] 58 mutS DNA mismatch repair protein MutS

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 28570950 (0.000)57 (1.040) 42/276 0.2 100% coding (3/2562 nt) mutS DNA mismatch repair protein MutS
?NC_000913 2859634 = 0 (0.000)coding (2542/2562 nt) mutS DNA mismatch repair protein MutS

GATK/CNVnator alignment

N/A