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Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	162	86.7	2935410	99.3%	2914862	138.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,857,096	Δ2,538 bp	coding (4‑2541/2562 nt)	mutS →	DNA mismatch repair protein MutS

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2857096	2859633	2538	113 [0]	[0] 112	mutS	DNA mismatch repair protein MutS

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2857095	0 (0.000)	112 (1.300)	72/274	0.1	100%	coding (3/2562 nt)	mutS	DNA mismatch repair protein MutS
*	?	NC_000913	2859634 =	0 (0.000)	112 (1.300)	72/274	0.1	100%	coding (2542/2562 nt)	mutS	DNA mismatch repair protein MutS

GATK/CNVnator alignment

N/A