Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 128 54.7 1845674 99.3% 1832754 139.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,153,648 A→G Y29C (TAC→TGC)  yghB → DedA family protein YghB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,153,6480AG100.0% 225.8 / NA 62Y29C (TAC→TGC) yghBDedA family protein YghB
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (37/25);  total (37/25)

CAGGAGTACAATAGGCAGATAAAGGCTTAAACGCTGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTACTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCATTGATTGCCCAGGGGGTTATGGATTTTCTGCCTACGATTGCGATT  >  NC_000913/3153511‑3153784
                                                                                                                                         |                                                                                                                                        
cAGGAGTACAATAGGCAGATAAAGGCTTAAACGCTGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCt                                                                                                                                        <  1:246079/140‑1 (MQ=255)
        cAATAGGCAGATAAAGGCTTAAACGCTGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATg                                                                                                                                >  1:63233/1‑140 (MQ=255)
        cAATAGGCAGATAAAGGCTTAAACGCTGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATg                                                                                                                                >  2:212783/1‑140 (MQ=255)
         aaTAGGCAGATAAAGGCTTAAACGCTGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGt                                                                                                                               >  1:369765/1‑140 (MQ=255)
             ggCAGATAAAGGCTTAAACGCTGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGc                                                                                                                           >  2:518223/1‑140 (MQ=255)
              gCAGATAAAGGCTTAAACGCTGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGcc                                                                                                                          >  2:160109/1‑140 (MQ=255)
                aGATAAAGGCTTAAACGCTGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCAc                                                                                                                        >  1:840356/1‑140 (MQ=255)
                aGATAAAGGCTTAAACGCTGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCAc                                                                                                                        >  2:461500/1‑140 (MQ=255)
                 gATAAAGGCTTAAACGCTGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACg                                                                                                                       <  2:498708/140‑1 (MQ=255)
                 gATAAAGGCTTAAACGCTGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACg                                                                                                                       <  2:919807/140‑1 (MQ=255)
                  aTAAAGGCTTAAACGCTGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGc                                                                                                                      <  2:63233/140‑1 (MQ=255)
                   tAAAGGCTTAAACGCTGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCt                                                                                                                     >  1:302749/1‑140 (MQ=255)
                          ttAAACGCTGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTa                                                                                                              >  1:384638/1‑140 (MQ=255)
                            aaaCGCTGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGa                                                                                                            >  1:202971/1‑140 (MQ=255)
                            aaaCGCTGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATCTTTGCCACGCTGTTTTTAGa                                                                                                            >  2:54868/1‑140 (MQ=255)
                                  tGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACgg                                                                                                      >  2:513590/1‑140 (MQ=255)
                                         caGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCctgctg                                                                                               <  1:513590/140‑1 (MQ=255)
                                              aaGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGc                                                                                          >  2:351632/1‑140 (MQ=255)
                                              aaGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGc                                                                                          >  2:353025/1‑140 (MQ=255)
                                              aaGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGc                                                                                          >  1:43451/1‑140 (MQ=255)
                                              aaGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGc                                                                                          >  1:240989/1‑140 (MQ=255)
                                                 tCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTc                                                                                       >  2:487720/1‑140 (MQ=255)
                                                   cATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCAt                                                                                     >  1:830303/1‑140 (MQ=255)
                                                      ggCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCAtttt                                                                                  >  1:806390/1‑140 (MQ=255)
                                                        cTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTg                                                                                <  1:518223/140‑1 (MQ=255)
                                                         tGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGc                                                                               <  2:840356/140‑1 (MQ=255)
                                                          gTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGcc                                                                              <  2:202971/140‑1 (MQ=255)
                                                           ttATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCa                                                                             <  1:455797/140‑1 (MQ=255)
                                                                cAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGa                                                                        <  2:240989/140‑1 (MQ=255)
                                                                cAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGa                                                                        <  1:160109/140‑1 (MQ=255)
                                                                  aGATATCATCGCTGCGCTCTGGCAAGACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACa                                                                      >  1:275951/1‑140 (MQ=255)
                                                                    atatCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGc                                                                    <  2:43451/140‑1 (MQ=255)
                                                                     tatCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCt                                                                   <  2:369765/140‑1 (MQ=255)
                                                                      atcatcGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCtt                                                                  <  2:384638/140‑1 (MQ=255)
                                                                        catcGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCttgt                                                                >  1:310431/1‑140 (MQ=255)
                                                                        catcGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCttgt                                                                >  2:881264/1‑140 (MQ=255)
                                                                        catcGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCttgt                                                                >  1:436015/1‑140 (MQ=255)
                                                                          tcGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCttgttg                                                              <  2:302749/140‑1 (MQ=255)
                                                                             cTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATa                                                           >  1:143540/1‑140 (MQ=255)
                                                                             cTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATa                                                           >  1:404770/1‑140 (MQ=255)
                                                                             cTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATa                                                           >  1:435650/1‑140 (MQ=255)
                                                                                 gcTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTgg                                                       <  1:353025/140‑1 (MQ=255)
                                                                                  ctctGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGc                                                      >  1:825372/1‑140 (MQ=255)
                                                                                       gCAACCCGCTTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTGGTCATGTTTGCCCCGCTTTTTTTAGAAACCGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGgcg                                                 <  2:469127/140‑1 (MQ=255)
                                                                                             cGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCattga                                           <  1:708192/140‑1 (MQ=255)
                                                                                             cGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCattga                                           <  2:825372/140‑1 (MQ=255)
                                                                                             cGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCattga                                           <  2:435650/140‑1 (MQ=255)
                                                                                             cGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATCTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCattga                                           <  1:54868/140‑1 (MQ=255)
                                                                                                 tttGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCATTGATTGc                                       >  1:252830/1‑140 (MQ=255)
                                                                                                      cgcgCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCATTGATTGCCCAgg                                  <  2:275951/140‑1 (MQ=255)
                                                                                                      cgcgCTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCATTGATTGCCCAgg                                  <  1:838104/140‑1 (MQ=255)
                                                                                                          cTGGCGGATCCTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCATTGATTGCCCAGGGGGt                              >  1:855530/1‑140 (MQ=255)
                                                                                                                    cTCATATTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCATTGATTGCCCAGGGGGTTATGGAtttt                    >  2:479637/1‑140 (MQ=255)
                                                                                                                       atatTGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCATTGATTGCCCAGGGGGTTATGGATTTTCTg                 >  1:811931/1‑140 (MQ=255)
                                                                                                                           tGTTAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCATTGATTGCCCAGGGGGTTATGGATTTTCTGCCTa             >  2:778162/1‑140 (MQ=255)
                                                                                                                             ttAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCATTGATTGCCCAGGGGGTTATGGATTTTCTGcc               <  2:425760/136‑1 (MQ=255)
                                                                                                                             ttAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCATTGATTGCCCAGGGGGTTATGGATTTTCTGcc               >  1:425760/1‑136 (MQ=255)
                                                                                                                              tAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCATTGATTGCCCAGGGGGTTATGGATTTTCTGCCTACGa          >  2:573957/1‑140 (MQ=255)
                                                                                                                              tAGCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCATTGATTGCCCAGGGGGTTATGGATTTTCTGCCTACGa          >  2:9934/1‑140 (MQ=255)
                                                                                                                                gCGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCATTGATTGCCCAGGGGGTTATGGATTTTCTGCCTACGAtt        >  2:687289/1‑140 (MQ=255)
                                                                                                                                 cGTTGTTTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCATTGATTGCCCAGGGGGTTATGGATTTTCTGCCTACGATTg       <  2:104688/140‑1 (MQ=255)
                                                                                                                                   ttgttTGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCATTGATTGCCCAGGGGGTTATGGATTTTCTGCCTACGATTGCg     >  1:734020/1‑140 (MQ=255)
                                                                                                                                      tttGCTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCATTGATTGCCCAGGGGGTTATGGATTTTCTGCCTACGATTGCGAtt  <  1:573957/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
CAGGAGTACAATAGGCAGATAAAGGCTTAAACGCTGTTCCACAGGAAAGTCCATGGCTGTTATTCAAGATATCATCGCTGCGCTCTGGCAACACGACTTTGCCGCGCTGGCGGATCCTCATATTGTTAGCGTTGTTTACTTTGTCATGTTTGCCACGCTGTTTTTAGAAAACGGCCTGCTGCCCGCCTCATTTTTGCCAGGCGACAGCTTGTTGATACTGGCAGGCGCATTGATTGCCCAGGGGGTTATGGATTTTCTGCCTACGATTGCGATT  >  NC_000913/3153511‑3153784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A