Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F28 I1 R1
|
128 |
54.7 |
1845674 |
99.3% |
1832754 |
139.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,422,430 |
A→G |
D82G (GAC→GGC) |
ulaD → |
3‑keto‑L‑gulonate‑6‑phosphate decarboxylase UlaD |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,422,430 | 0 | A | G | 100.0%
| 222.2
/ NA
| 60 | D82G (GAC→GGC) | ulaD | 3‑keto‑L‑gulonate‑6‑phosphate decarboxylase UlaD |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (26/34); total (26/34) |
ATTCTGTGCGTGGGCGAAGGCGTGCGTGCGGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGACTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTGGACCTGGGAACAGGCGCAACAGTGGCGC > NC_000913/4422294‑4422563
|
aTTCTGTGCGTGGGCGAAGGCGTGCGTGCGGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACgctggctg < 1:122214/140‑1 (MQ=255)
tCTGTGCGTGGGCGAAGGCGTGCGTGCGGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTggg < 2:31099/140‑1 (MQ=255)
tgtgCGTGGGCGAAGGCGTGCGTGCGGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTg > 2:480904/1‑140 (MQ=255)
gTGGGCGAAGGCGTGCGTGCGGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGt > 2:906442/1‑140 (MQ=255)
gggCGAAGGCGTGCGTGCGGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTaa > 2:651949/1‑140 (MQ=255)
aaGGCGTGCGTGCGGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGc > 2:188958/1‑140 (MQ=255)
aaGGCGTGCGTGCGGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGc > 2:564270/1‑140 (MQ=255)
aGGCGTGCGTGCGGTTCGCGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCt < 2:537222/140‑1 (MQ=255)
cgtgcgtgCGGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCtgtg < 1:612059/140‑1 (MQ=255)
cgtgcgtgCGGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCtgtg < 2:781436/140‑1 (MQ=255)
tgcgtgcgGTTCGTGACCTGAACGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCg < 1:651949/140‑1 (MQ=255)
tgcgtgcgGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCg > 2:485612/1‑140 (MQ=255)
tgcgtgcgGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCg < 2:464856/140‑1 (MQ=255)
tgcgtgcgGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCg < 2:561486/140‑1 (MQ=255)
tgcgtgcgGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCg < 2:191123/140‑1 (MQ=255)
tgcgtgcgGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCg < 2:749980/140‑1 (MQ=255)
ggcgtgcgGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCg < 2:166939/139‑1 (MQ=255)
gcgtgcgGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCtgtg > 2:829720/1‑137 (MQ=255)
gcgtgcgGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCtgtg < 1:829720/137‑1 (MQ=255)
gcgtgcgGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCgg < 1:610093/140‑1 (MQ=255)
gcgtgcgGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCgg > 2:153759/1‑140 (MQ=255)
gtgcgGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGat < 1:383375/140‑1 (MQ=255)
tgcgGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGata > 1:598119/1‑140 (MQ=255)
ttCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAac < 2:664244/140‑1 (MQ=255)
cTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCaa < 1:872017/140‑1 (MQ=255)
ctctACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAg < 2:67888/133‑1 (MQ=255)
ctctACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAg > 1:67888/1‑133 (MQ=255)
ctctACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCt > 1:452826/1‑140 (MQ=255)
gCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTgg < 1:480904/140‑1 (MQ=255)
acaAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCa > 1:491953/1‑140 (MQ=255)
aaaTCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCaaaa < 2:452826/140‑1 (MQ=255)
tCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAagag > 2:430066/1‑140 (MQ=255)
tACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGttt > 2:24581/1‑140 (MQ=255)
tGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAAc > 2:521343/1‑140 (MQ=255)
gCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACgg > 2:403617/1‑140 (MQ=255)
cAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGc < 1:557691/140‑1 (MQ=255)
aGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCg > 2:346345/1‑140 (MQ=255)
aCGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGAc > 1:659569/1‑140 (MQ=255)
cGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAAc < 1:504097/140‑1 (MQ=255)
aTGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTg > 2:69791/1‑140 (MQ=255)
tGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGa < 1:153759/140‑1 (MQ=255)
gCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGAc < 2:659569/140‑1 (MQ=255)
cAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACt < 1:310155/136‑1 (MQ=255)
cAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACt > 2:310155/1‑136 (MQ=255)
cAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGAcc < 2:599602/140‑1 (MQ=255)
aGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCg < 1:346345/140‑1 (MQ=255)
aTCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTg < 1:430066/140‑1 (MQ=255)
cTTTCGCGTATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTGGAc < 1:485526/140‑1 (MQ=255)
tATGTGCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTGGACCTGGGAAc < 1:470479/140‑1 (MQ=255)
gCTTCGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTGGACCTGGGAACAGgcg < 1:521343/140‑1 (MQ=255)
cGAAGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTGGACCTGGGAACAGGCGCAAc > 2:65351/1‑140 (MQ=255)
aaGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTGGACCTGGGAACAGGCGCAACAg > 2:511315/1‑140 (MQ=255)
aaGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTGGACCTGGGAACAGGCGCAACAg > 2:250950/1‑140 (MQ=255)
aaGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTGGACCTGGGAACAGGCGCAACAg > 1:249685/1‑140 (MQ=255)
aaGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTGGACCTGGGAACAGGCGCAACAg > 1:452901/1‑140 (MQ=255)
aaGCCAACGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTGGACCTGGGAACAGGCGCAACAg > 1:707719/1‑140 (MQ=255)
aaCGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTGGACCTGGGAACAGGCGCAACAGTGgcg < 1:511315/140‑1 (MQ=255)
aaCGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTGGACCTGGGAACAGGCGCAACAGTGgcg < 1:564270/140‑1 (MQ=255)
aaCGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTGGACCTGGGAACAGGCGCAACAGTGgcg < 2:725324/140‑1 (MQ=255)
aaCGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTGGACCTGGGAACAGGCGCAACAGTGgcg < 1:188958/140‑1 (MQ=255)
aCGCTGGCTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTGGACCTGGGAACAGGCGCAACAGTGgcgc < 1:146405/140‑1 (MQ=255)
|
ATTCTGTGCGTGGGCGAAGGCGTGCGTGCGGTTCGTGACCTGAAAGCGCTCTACCCGCACAAAATCGTACTGGCAGACGCCAAAATTGCCGATGCAGGCAAAATCCTTTCGCGTATGTGCTTCGAAGCCAACGCTGACTGGGTGACGGTAATTTGCTGTGCGGATATCAACACCGCCAAAGGCGCGCTGGACGTGGCAAAAGAGTTTAACGGCGACGTGCAGATCGAACTGACCGGTTACTGGACCTGGGAACAGGCGCAACAGTGGCGC > NC_000913/4422294‑4422563
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A