Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	116	72.9	2471836	99.3%	2454533	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	668,817	T→C	S74G (AGC→GGC)	rsfS ←	ribosomal silencing factor RsfS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	668,817	0	T	C	100.0%	220.9 / NA	62	S74G (AGC→GGC)	rsfS	ribosomal silencing factor RsfS
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (29/33); total (29/33)

CATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGTTCATACAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCTGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAGATGATCATGCAGTCGGTGATGCTGGATTTGCC  >  NC_000913/668680‑668952

cATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGTTCATACAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGt                                                                                                                                       >  1:1079518/1‑140 (MQ=255)

cATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGTTCATACAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGt                                                                                                                                       >  1:472782/1‑140 (MQ=255)

    ttCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGTTCATACAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTc                                                                                                                                   <  2:1165433/140‑1 (MQ=255)

            cACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGTTCATACAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTa                                                                                                                           >  1:147068/1‑140 (MQ=255)

               ggCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGTTCATACAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGc                                                                                                                        <  1:924364/140‑1 (MQ=255)

                                 cACGCATTAACTCCAGAGTTTTTCCAGTTCATACAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCg                                                                                                      <  1:1030253/140‑1 (MQ=255)

                                    gCATTAACTCCAGAGTTTTTCCAGTTCATACAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTg                                                                                                   <  2:744339/140‑1 (MQ=255)

                                         aaCTCCAGAGTTTTTCCAGTTCATACAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCga                                                                                              <  2:147068/140‑1 (MQ=255)

                                         aaCTCCAGAGTTTTTCCAGTTCATACAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCga                                                                                              <  2:472782/140‑1 (MQ=255)

                                              cAGAGTTTTTCCAGTTCATACAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTc                                                                                         <  1:96831/140‑1 (MQ=255)

                                                gagTTTTTCCAGTTCATACAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCt                                                                                       >  1:659320/1‑140 (MQ=255)

                                                 agTTTTTCCAGTTCATACAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTg                                                                                      >  1:695621/1‑140 (MQ=255)

                                                     tttCCAGTTCATACAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGcaca                                                                                  >  1:949728/1‑140 (MQ=255)

                                                           gTTCATACAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTgg                                                                            >  1:951757/1‑140 (MQ=255)

                                                             tCATACAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTc                                                                          >  2:898684/1‑140 (MQ=255)

                                                                 aCAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCa                                                                      >  2:534082/1‑140 (MQ=255)

                                                                 aCAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCa                                                                      >  2:560341/1‑140 (MQ=255)

                                                                 aCAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCa                                                                      <  1:1073360/140‑1 (MQ=255)

                                                                 aCAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCa                                                                      <  1:898684/140‑1 (MQ=255)

                                                                  cAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCaa                                                                     <  1:744927/140‑1 (MQ=255)

                                                                      cGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGa                                                                 <  2:659320/140‑1 (MQ=255)

                                                                      cGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGa                                                                 <  2:867564/140‑1 (MQ=255)

                                                                      cGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGa                                                                 >  1:867564/1‑140 (MQ=255)

                                                                        aCGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACa                                                               >  1:529178/1‑140 (MQ=255)

                                                                        aCGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACa                                                               >  1:612073/1‑140 (MQ=255)

                                                                               tctTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATg                                                        >  2:243416/1‑140 (MQ=255)

                                                                                        aTGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGa                                               <  2:529178/140‑1 (MQ=255)

                                                                                        aTGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACATTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGa                                               <  2:1079518/140‑1 (MQ=255)

                                                                                         tGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGAc                                              >  2:380085/1‑140 (MQ=255)

                                                                                         tGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGAc                                              >  2:1009877/1‑140 (MQ=255)

                                                                                            cATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTa                                           <  2:951757/140‑1 (MQ=255)

                                                                                               ggACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTAccc                                        <  1:1130778/140‑1 (MQ=255)

                                                                                               ggACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTAccc                                        >  2:561030/1‑140 (MQ=255)

                                                                                               ggACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTAccc                                        >  2:322878/1‑140 (MQ=255)

                                                                                                gACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACgg                                                    >  1:23688/1‑127 (MQ=255)

                                                                                                gACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACgg                                                    <  2:23688/127‑1 (MQ=255)

                                                                                                gACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCg                                       <  1:104431/140‑1 (MQ=255)

                                                                                                 aCAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGt                                      >  1:500627/1‑140 (MQ=255)

                                                                                                   aaTCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTAc                                    <  1:560341/140‑1 (MQ=255)

                                                                                                   aaTCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTAc                                    <  1:534082/140‑1 (MQ=255)

                                                                                                   aaTCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTAc                                    <  1:860420/140‑1 (MQ=255)

                                                                                                     tCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGt                                            >  1:54187/1‑130 (MQ=255)

                                                                                                     tCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGt                                            <  2:54187/130‑1 (MQ=255)

                                                                                                     tCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAg                                  >  1:723684/1‑140 (MQ=255)

                                                                                                     tCACATCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAg                                  >  1:731738/1‑140 (MQ=255)

                                                                                                      cacaTCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAga                                 >  2:668724/1‑140 (MQ=255)

                                                                                                          tCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGa                                               >  1:1225552/1‑122 (MQ=255)

                                                                                                          tCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGa                                               <  2:1225552/122‑1 (MQ=255)

                                                                                                          tCGCCCAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAgatgat                             >  1:972988/1‑140 (MQ=255)

                                                                                                              ccAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAGATGATCATg                         <  1:972074/140‑1 (MQ=255)

                                                                                                              ccAAATCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAGATGATCATg                         <  1:668724/140‑1 (MQ=255)

                                                                                                                  aTCCACGACAATCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAGATGATCATGCAGt                     <  2:1038622/140‑1 (MQ=255)

                                                                                                                             tCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAGATGATCATGCAGTCGGTGATGCTg          >  1:225206/1‑140 (MQ=255)

                                                                                                                             tCCAGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAGATGATCATGCAGTCGGTGATGCTg          >  1:570060/1‑140 (MQ=255)

                                                                                                                                aGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAGATGATCATGCAGTCGGTGATGCTGGAt       <  2:612073/140‑1 (MQ=255)

                                                                                                                                aGTCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAGATGATCATGCAGTCGGTGATGCTGGAt       <  1:243416/140‑1 (MQ=255)

                                                                                                                                  tCGGCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAGATGATCATGCAGTCGGTGATGCTGGAttt     >  2:665496/1‑140 (MQ=255)

                                                                                                                                    ggCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAGATGATCATGCAGTCGGTGATGCTGGATTTGc   <  2:723684/140‑1 (MQ=255)

                                                                                                                                    ggCGCCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAGATGATCATGCAGTCGGTGATGCTGGATTTGc   <  2:731738/140‑1 (MQ=255)

                                                                                                                                     gcgcCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAGATGATCATGCAGTCGGTGATGCTGGATTTGcc  <  2:570060/140‑1 (MQ=255)

                                                                                                                                     gcgcCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAGATGATCATGCAGTCGGTGATGCTGGATTTGcc  <  1:322878/140‑1 (MQ=255)

                                                                                                                                     gcgcCGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAGATGATCATGCAGTCGGTGATGCTGGATTTGcc  <  2:225206/140‑1 (MQ=255)

CATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGTTCATACAGGCGACGGCTCTCTTCCTGCATGACATGGACAATCACATCGCCCAAATCCACGACAATCCAGTCGGCGCTGTTTTCACCTTCTACGCCGAGCGGTAACAGGCCCGCTGCGCGAGACTCCTGCACAACGTGGTCAGCAATGGACATAACATGACGGCTGGACGTACCCGTACAGATGATCATGCAGTCGGTGATGCTGGATTTGCC  >  NC_000913/668680‑668952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A