Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 116 72.9 2471836 99.3% 2454533 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,768,863 G→A A67T (GCC→ACC)  yfjQ → CP4‑57 prophage; protein YfjQ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,768,8630GA100.0% 280.6 / NA 81A67T (GCC→ACC) yfjQCP4‑57 prophage; protein YfjQ
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (42/39);  total (42/39)

CGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTGCCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATCCTGCTTAACTCTCACGATGGCACCAGTTC  >  NC_000913/2768728‑2768999
                                                                                                                                       |                                                                                                                                        
cGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTg                                                                                                                                      <  2:849499/140‑1 (MQ=255)
  tGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTc                                                                                                                                    >  1:1051604/1‑140 (MQ=255)
  tGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTc                                                                                                                                    >  2:951567/1‑140 (MQ=255)
    aaGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCTATTCTTTACCTGTCAg                                                                                                                                  <  2:904992/140‑1 (MQ=255)
    aaGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAg                                                                                                                                  <  1:464320/140‑1 (MQ=255)
     agagTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGa                                                                                                                                 <  2:677445/140‑1 (MQ=255)
        gTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGacac                                                                                                                              <  1:813660/140‑1 (MQ=255)
              tCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTAc                                                                                                                        >  1:855795/1‑140 (MQ=255)
                    ggtgCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGAcc                                                                                                                  >  2:319692/1‑140 (MQ=255)
                      tgCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACg                                                                                                                             >  2:573743/1‑127 (MQ=255)
                      tgCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACg                                                                                                                             <  1:573743/127‑1 (MQ=255)
                          cAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCcgtc                                                                                                            <  2:1059924/140‑1 (MQ=255)
                             cGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCcgtcgtc                                                                                                         >  1:1115124/1‑140 (MQ=255)
                              gTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCcgtcgtcg                                                                                                        <  2:912245/140‑1 (MQ=255)
                              gTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCcgtcgtcg                                                                                                        <  1:197272/140‑1 (MQ=255)
                                aTTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTg                                                                                                      >  1:1019556/1‑140 (MQ=255)
                                aTTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTg                                                                                                      >  1:788771/1‑140 (MQ=255)
                                  tCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAg                                                                                                    <  2:1019556/140‑1 (MQ=255)
                                  tCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAg                                                                                                    >  2:1002939/1‑140 (MQ=255)
                                      tGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGa                                                                                                     <  1:38911/135‑1 (MQ=255)
                                      tGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGa                                                                                                     >  2:38911/1‑135 (MQ=255)
                                      tGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATa                                                                                                >  2:595341/1‑140 (MQ=255)
                                      tGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATa                                                                                                <  2:102365/140‑1 (MQ=255)
                                       gAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAg                                                                                                    <  1:1163505/135‑1 (MQ=255)
                                       gAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAg                                                                                                    <  2:805852/135‑1 (MQ=255)
                                       gAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAg                                                                                                    >  2:1163505/1‑135 (MQ=255)
                                       gAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAg                                                                                                    >  1:805852/1‑135 (MQ=255)
                                       gAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGc                                                                                                   >  1:116428/1‑136 (MQ=255)
                                       gAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGc                                                                                                   <  2:116428/136‑1 (MQ=255)
                                       gAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATAc                                                                                               >  1:666355/1‑140 (MQ=255)
                                       gAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATAc                                                                                               >  1:189311/1‑140 (MQ=255)
                                          gATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTaa                                                                                            >  1:7979/1‑140 (MQ=255)
                                           aTAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAg                                                                                           >  2:299037/1‑140 (MQ=255)
                                           aTAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAg                                                                                           >  2:1215222/1‑140 (MQ=255)
                                             aaaCACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCa                                                                                         <  1:299037/140‑1 (MQ=255)
                                               acacGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCata                                                                                       <  2:666355/140‑1 (MQ=255)
                                                    aaTCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATAc                                                                                               <  2:776378/127‑1 (MQ=255)
                                                    aaTCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATAc                                                                                               >  1:776378/1‑127 (MQ=255)
                                                    aaTCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATAtgctg                                                                                  >  2:1121562/1‑140 (MQ=255)
                                                      tCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTgcg                                                                                <  1:319692/140‑1 (MQ=255)
                                                                 aCGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCggg                                                                     <  1:760948/140‑1 (MQ=255)
                                                                   gCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAg                                                                   <  1:1215222/140‑1 (MQ=255)
                                                                     tACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAggg                                                                 <  1:951567/140‑1 (MQ=255)
                                                                            atataCCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAAtt                                                          >  1:492293/1‑140 (MQ=255)
                                                                               taCCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCTGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTAcc                                                       >  1:928033/1‑140 (MQ=255)
                                                                               taCCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAAt                                                           >  1:548554/1‑136 (MQ=255)
                                                                               taCCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAAt                                                           <  2:548554/136‑1 (MQ=255)
                                                                               taCCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTAcc                                                       <  2:870272/140‑1 (MQ=255)
                                                                                 cccACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCgg                                                     >  1:181561/1‑140 (MQ=255)
                                                                                 cccACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCgg                                                     >  1:99663/1‑140 (MQ=255)
                                                                                    acaATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGa                                                                    <  2:391711/122‑1 (MQ=255)
                                                                                    acaATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGa                                                                    >  1:391711/1‑122 (MQ=255)
                                                                                    acaATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTaa                                                  >  2:637612/1‑140 (MQ=255)
                                                                                    acaATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTaa                                                  >  1:800871/1‑140 (MQ=255)
                                                                                    acaATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTaa                                                  >  2:942730/1‑140 (MQ=255)
                                                                                     caATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTaaa                                                 <  1:637612/140‑1 (MQ=255)
                                                                                           cccTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTAc                                                        <  2:555991/127‑1 (MQ=255)
                                                                                           cccTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTAc                                                        >  1:555991/1‑127 (MQ=255)
                                                                                                ctcgACAGCCTACAGCGAGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGa                                      >  1:254775/4‑140 (MQ=255)
                                                                                                  ggACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGaaa                                    <  2:476164/140‑1 (MQ=255)
                                                                                                  ggACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGaaa                                    <  2:1051604/140‑1 (MQ=255)
                                                                                                   gACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAAt                                   >  2:904937/1‑140 (MQ=255)
                                                                                                     cAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAGATTACCGGTAAACAGGTTCCGGAAATTa                                 <  2:1115124/140‑1 (MQ=255)
                                                                                                       gCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATc                               <  2:7979/140‑1 (MQ=255)
                                                                                                        ccTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATcc                              >  1:151750/1‑140 (MQ=255)
                                                                                                        ccTGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATcc                              >  1:15717/1‑140 (MQ=255)
                                                                                                          tGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATCCTg                            >  1:679010/1‑140 (MQ=255)
                                                                                                          tGCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATCCTg                            >  1:1191285/1‑140 (MQ=255)
                                                                                                           gCAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATCCTGc                           <  1:595341/140‑1 (MQ=255)
                                                                                                            cAGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATCCTGCt                          <  1:1121562/140‑1 (MQ=255)
                                                                                                             aGCGGGAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATCCTGCtt                         >  2:276698/1‑140 (MQ=255)
                                                                                                                gggAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATCCTGCTTAAc                      <  2:492293/140‑1 (MQ=255)
                                                                                                                  gAAGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATCCTGCTTAActc                    >  2:736980/1‑140 (MQ=255)
                                                                                                                   aaGGCTTCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATCCTGCTTAActct                   >  1:77352/1‑140 (MQ=255)
                                                                                                                        ttCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATCCTGCTTAACTCTCACGa              <  2:189311/140‑1 (MQ=255)
                                                                                                                         tCCAGCCATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATCCTGCTTAACTCTCACGAt             <  2:855795/140‑1 (MQ=255)
                                                                                                                              ccATTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATCCTGCTTAACTCTCACGATGGCAc        <  1:293892/140‑1 (MQ=255)
                                                                                                                                aTTCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATCCTGCTTAACTCTCACGATGGCACCa      >  1:377706/1‑140 (MQ=255)
                                                                                                                                  tCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAACCAGGTTCCGGAAATTATCCTGCTTAACTCTCACGATGGCACCAGt    >  2:802202/1‑140 (MQ=255)
                                                                                                                                  tCTTTACCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATCCTGCTTAACTCTCACGATGGCACCAGt    <  2:679010/140‑1 (MQ=255)
                                                                                                                                    tttACCTGTCAGACACGGGTACGTGACCCCTGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATCCTGCTTAACTCTCACGATGGCACCAGTTc  <  2:928033/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
CGTGAAGAGTTATTTCGCGTGGTGCCCAGCGTATTCAGTGAGGATAAACACGAATCCCGCAGTGAACGCTACACGTATATACCCACAATTTCCCTGCTGGACAGCCTGCAGCGGGAAGGCTTCCAGCCATTCTTTGCCTGTCAGACACGGGTACGTGACCCCCGTCGTCGTGAGCATACTAAGCATATGCTGCGCCTACGTCGGGAGGGGCAAATTACCGGTAAACAGGTTCCGGAAATTATCCTGCTTAACTCTCACGATGGCACCAGTTC  >  NC_000913/2768728‑2768999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A