Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 116 72.9 2471836 99.3% 2454533 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,519,289 T→C intergenic (‑225/+176) aroK ← / ← hofQ shikimate kinase 1/DNA utilization protein HofQ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,519,2890TC100.0% 345.0 / NA 95intergenic (‑225/+176)aroK/hofQshikimate kinase 1/DNA utilization protein HofQ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (48/47);  total (48/47)

TGCGAGAGTCAGACTGAAAATTATCTCAATACTCCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGTAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTGCGCGCGTCAAATAGAT  >  NC_000913/3519155‑3519422
                                                                                                                                      |                                                                                                                                     
tGCGAGAGTCAGACTGAAAATTATCTCAATACTCCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGAt                                                                                                                                  >  1:882190/1‑140 (MQ=255)
tGCGAGAGTCAGACTGAAAATTATCTCAATACTCCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGAt                                                                                                                                  >  1:1110555/1‑140 (MQ=255)
tGCGAGAGTCAGACTGAAAATTATCTCAATACTCCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGAt                                                                                                                                  >  1:76927/1‑140 (MQ=255)
tGCGAGAGTCAGACTGAAAATTATCTCAATACTCCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGAt                                                                                                                                  >  1:330754/1‑140 (MQ=255)
tGCGAGAGTCAGACTGAAAATTATCTCAATACTCCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGAt                                                                                                                                  <  1:269263/140‑1 (MQ=255)
 gCGAGAGTCAGACTGAAAATTATCTCAATACTCCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGAtt                                                                                                                                 >  2:123113/1‑140 (MQ=255)
    agagTCAGACTGAAAATTATCTCAATACTCCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGc                                                                                                                              <  2:396221/140‑1 (MQ=255)
                          cAATACTCCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATgcc                                                                                                        >  2:687386/1‑140 (MQ=255)
                                  cAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAAt                                                                                                >  2:386102/1‑140 (MQ=255)
                                  cAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAAt                                                                                                >  1:700678/1‑140 (MQ=255)
                                  cAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAAt                                                                                                >  1:628301/1‑140 (MQ=255)
                                   aGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATg                                                                                               >  1:246958/1‑140 (MQ=255)
                                     cGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGAt                                                                                             <  2:991018/140‑1 (MQ=255)
                                     cGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGAt                                                                                             >  1:191621/1‑140 (MQ=255)
                                       ggTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGTAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATaa                                                                                           >  1:1132671/1‑140 (MQ=255)
                                       ggTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAAt                                                                                                <  2:1049307/135‑1 (MQ=255)
                                       ggTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAAt                                                                                                >  1:1049307/1‑135 (MQ=255)
                                       ggTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATaa                                                                                           >  2:257280/1‑140 (MQ=255)
                                       ggTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATaa                                                                                           >  2:464136/1‑140 (MQ=255)
                                         tttGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAat                                                                                         <  2:525006/140‑1 (MQ=255)
                                          ttGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAatc                                                                                        >  1:1015040/1‑140 (MQ=255)
                                           tGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGTAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAatca                                                                                       <  2:1132671/140‑1 (MQ=255)
                                           tGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAatca                                                                                       >  2:829513/1‑140 (MQ=255)
                                            ggCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAatcat                                                                                      >  2:903828/1‑140 (MQ=255)
                                            ggCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAatcat                                                                                      <  2:330754/140‑1 (MQ=255)
                                            ggCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAatcat                                                                                      <  1:386102/140‑1 (MQ=255)
                                              cAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAatcatca                                                                                    <  2:882190/140‑1 (MQ=255)
                                              cAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAatcatca                                                                                    <  2:76927/140‑1 (MQ=255)
                                                  tGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATcatcatcat                                                                                <  1:687386/140‑1 (MQ=255)
                                                    aaTAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAatcatca                                                                                    >  2:189453/1‑134 (MQ=255)
                                                    aaTAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAatcatca                                                                                    <  1:189453/134‑1 (MQ=255)
                                                    aaTAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATgg                                                                              >  2:60089/1‑140 (MQ=255)
                                                         aTCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACgc                                                                         <  2:628301/140‑1 (MQ=255)
                                                           cACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATcatcatcat                                                                                >  2:518662/1‑131 (MQ=255)
                                                           cACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATcatcatcat                                                                                <  1:518662/131‑1 (MQ=255)
                                                           cACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACgcag                                                                       <  2:1110555/140‑1 (MQ=255)
                                                             cccATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACgcaggc                                                                     >  2:539332/1‑140 (MQ=255)
                                                              ccATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGTTTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACgcaggca                                                                    >  2:68046/1‑140 (MQ=255)
                                                              ccATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACgcaggca                                                                    >  1:211734/1‑140 (MQ=255)
                                                              ccATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACgcaggca                                                                    >  1:1026358/1‑140 (MQ=255)
                                                              ccATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACgcaggca                                                                    >  1:1082990/1‑140 (MQ=255)
                                                                  cccTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGa                                                                >  2:978322/1‑140 (MQ=255)
                                                                  cccTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGa                                                                <  2:246958/140‑1 (MQ=255)
                                                                   ccTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGaa                                                               >  1:1175288/1‑140 (MQ=255)
                                                                      ctGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAagag                                                            >  1:601386/1‑140 (MQ=255)
                                                                       tGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGc                                                           >  2:630691/1‑140 (MQ=255)
                                                                          atatCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCAcc                                                        <  2:508247/140‑1 (MQ=255)
                                                                          atatCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCAcc                                                        <  1:261127/140‑1 (MQ=255)
                                                                            atCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCaa                                                      >  2:782331/1‑140 (MQ=255)
                                                                            atCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCaa                                                      >  1:1110389/1‑140 (MQ=255)
                                                                            atCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCaa                                                      >  2:337762/1‑140 (MQ=255)
                                                                            atCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCaa                                                      >  2:327214/1‑140 (MQ=255)
                                                                             tCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAAc                                                     >  2:367993/1‑140 (MQ=255)
                                                                              cTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGTAGCGAAGAGCACCAAct                                                    >  2:30716/1‑140 (MQ=255)
                                                                              cTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAAct                                                    >  1:310335/1‑140 (MQ=255)
                                                                              cTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAAct                                                    >  1:639056/1‑140 (MQ=255)
                                                                                ggTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAActct                                                  <  1:367993/140‑1 (MQ=255)
                                                                                ggTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAActct                                                  <  2:1026358/140‑1 (MQ=255)
                                                                                ggTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAActct                                                  >  1:1106054/1‑140 (MQ=255)
                                                                                 gTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAAc                                                     <  1:237466/136‑1 (MQ=255)
                                                                                 gTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAAc                                                     >  2:237466/1‑136 (MQ=255)
                                                                                 gTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACtctc                                                 >  2:78824/1‑140 (MQ=255)
                                                                                  tCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCa                                                <  1:1126753/140‑1 (MQ=255)
                                                                                   cGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCaa                                               >  1:1148626/1‑140 (MQ=255)
                                                                                    gCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCaaa                                              >  2:286157/1‑140 (MQ=255)
                                                                                     cTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAAt                                             <  2:1220614/140‑1 (MQ=255)
                                                                                        cAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCgg                                          <  2:191621/140‑1 (MQ=255)
                                                                                           gcgcgcTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTAc                                       <  2:1015040/140‑1 (MQ=255)
                                                                                           gcgcgcTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTAc                                       <  2:601386/140‑1 (MQ=255)
                                                                                           gcgcgcTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTAc                                       <  1:782331/140‑1 (MQ=255)
                                                                                           gcgcgcTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGAACCAACTCTCAAATCGGTAc                                       <  2:670218/140‑1 (MQ=255)
                                                                                            cgcgcTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGTAGCGAAGAGCACCAACTCTCAAATCGGTACt                                      <  1:30716/140‑1 (MQ=255)
                                                                                                cTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCtt                                  >  2:444768/1‑140 (MQ=255)
                                                                                                cTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCtt                                  <  1:60089/140‑1 (MQ=255)
                                                                                                cTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCtt                                  <  1:539332/140‑1 (MQ=255)
                                                                                                cTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCtt                                  <  2:700678/140‑1 (MQ=255)
                                                                                                  gCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGt                                <  1:327214/140‑1 (MQ=255)
                                                                                                   ccTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTa                               <  1:829513/140‑1 (MQ=255)
                                                                                                   ccTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTa                               <  1:978322/140‑1 (MQ=255)
                                                                                                   ccTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTa                               <  2:310335/140‑1 (MQ=255)
                                                                                                   ccTTGCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTa                               <  1:444768/140‑1 (MQ=255)
                                                                                                       gCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATCAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCt                           <  2:1082990/140‑1 (MQ=255)
                                                                                                       gCTACCACCGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCt                           <  1:257280/140‑1 (MQ=255)
                                                                                                             accGCTCTGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATAc                     >  1:209018/1‑140 (MQ=255)
                                                                                                                 ctctGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACACAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTgc                 >  1:214261/1‑140 (MQ=255)
                                                                                                                  tctGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTa                               >  2:782158/1‑125 (MQ=255)
                                                                                                                  tctGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTa                               <  1:782158/125‑1 (MQ=255)
                                                                                                                  tctGGCGATAAATCACCGAGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTgcg                >  1:932850/1‑140 (MQ=255)
                                                                                                                  tctGGCGATAAATCACCGAGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTgcg                <  2:932850/140‑1 (MQ=255)
                                                                                                                   ctGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTgcgc               <  2:1148626/140‑1 (MQ=255)
                                                                                                                    tGGCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTgcgcg              <  2:1110389/140‑1 (MQ=255)
                                                                                                                      gCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTGcgcgcg            <  2:803606/140‑1 (MQ=255)
                                                                                                                      gCGATAAATCACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTGcgcgcg            <  2:937645/140‑1 (MQ=255)
                                                                                                                               cACCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGT‑TGCTAAATACCTGCGCGCGTCAAATAGAt  <  1:1020473/140‑1 (MQ=255)
                                                                                                                                aCCGGGCAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTGCGCGCGTCAAATAGAt  <  1:903828/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                     
TGCGAGAGTCAGACTGAAAATTATCTCAATACTCCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGTAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTGCGCGCGTCAAATAGAT  >  NC_000913/3519155‑3519422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A