Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 116 72.9 2471836 99.3% 2454533 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,988,444 T→C Q208R (CAG→CGG)  hemX ← PF04375 family protein HemX

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,988,4440TC100.0% 290.1 / NA 79Q208R (CAG→CGG) hemXPF04375 family protein HemX
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (35/44);  total (35/44)

AAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCTGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGTCATTCATATCCGCCAGGCTGGCGTCTGCA  >  NC_000913/3988309‑3988575
                                                                                                                                       |                                                                                                                                   
taGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGAtt                                                                                                                                 <  1:35611/139‑1 (MQ=255)
aaGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGAtt                                                                                                                                 <  2:140655/140‑1 (MQ=255)
aaGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGAtt                                                                                                                                 <  2:463766/140‑1 (MQ=255)
aaGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGAtt                                                                                                                                 <  1:1099025/140‑1 (MQ=255)
 aGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTa                                                                                                                                <  1:803074/140‑1 (MQ=255)
   ttCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCGTTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAg                                                                                                                              <  1:278319/140‑1 (MQ=255)
   ttCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAg                                                                                                                              <  2:209782/140‑1 (MQ=255)
    tCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGc                                                                                                                             <  2:15752/140‑1 (MQ=255)
    tCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGc                                                                                                                             >  1:1105373/1‑140 (MQ=255)
     cTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCt                                                                                                                            >  2:1006125/1‑140 (MQ=255)
      tGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCtt                                                                                                                           >  1:1097854/1‑140 (MQ=255)
       gCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGAtt                                                                                                                                 >  1:574528/1‑133 (MQ=255)
       gCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGAtt                                                                                                                                 <  2:574528/133‑1 (MQ=255)
            cTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGgat                                                                                                                     >  2:681710/1‑140 (MQ=255)
             ttttttGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGgatg                                                                                                                    >  2:519690/1‑140 (MQ=255)
                tttGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGatgatg                                                                                                                 <  2:703365/140‑1 (MQ=255)
                 ttGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGc                                                                                                                <  1:681710/140‑1 (MQ=255)
                       aTTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCAt                                                                                                          >  1:1040082/1‑140 (MQ=255)
                            tACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATcc                                                                                                     <  1:387417/140‑1 (MQ=255)
                            tACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATcc                                                                                                     <  1:405117/140‑1 (MQ=255)
                            tACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATcc                                                                                                     <  1:610273/140‑1 (MQ=255)
                            tACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATcc                                                                                                     <  2:1040082/140‑1 (MQ=255)
                               gCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCAcc                                                                                                  <  2:1097854/140‑1 (MQ=255)
                                 cATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTg                                                                                                >  2:541339/1‑140 (MQ=255)
                                 cATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTg                                                                                                <  1:484634/140‑1 (MQ=255)
                                 cATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTg                                                                                                >  2:121569/1‑140 (MQ=255)
                                   ttCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCg                                                                                              >  1:835410/1‑140 (MQ=255)
                                   ttCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCg                                                                                              >  2:686951/1‑140 (MQ=255)
                                   ttCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCg                                                                                              >  2:1216734/1‑140 (MQ=255)
                                   ttCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCg                                                                                              >  2:924469/1‑140 (MQ=255)
                                   ttCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATGTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCg                                                                                              >  2:924966/1‑140 (MQ=255)
                                    tCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGa                                                                                             <  1:1061660/140‑1 (MQ=255)
                                      gCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATa                                                                                           >  1:569760/1‑140 (MQ=255)
                                      gCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATa                                                                                           <  1:924469/140‑1 (MQ=255)
                                       cTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATAc                                                                                          <  1:924966/140‑1 (MQ=255)
                                          aTGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGc                                                                                       <  1:151934/140‑1 (MQ=255)
                                                 tGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAgg                                                                                <  2:184072/140‑1 (MQ=255)
                                                 tGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAgg                                                                                <  2:569760/140‑1 (MQ=255)
                                                 tGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAgg                                                                                <  1:112381/140‑1 (MQ=255)
                                                    aaaGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTg                                                                             <  1:686951/140‑1 (MQ=255)
                                                    aaaGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTg                                                                             >  2:113003/1‑140 (MQ=255)
                                                       gCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCg                                                                          >  1:860562/1‑140 (MQ=255)
                                                         tctTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGat                                                                        <  2:785273/140‑1 (MQ=255)
                                                              aCCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATatcat                                                                   <  1:328514/140‑1 (MQ=255)
                                                              aCCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATatcat                                                                   <  1:121569/140‑1 (MQ=255)
                                                                         ccATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGcc                                                        <  2:1105373/140‑1 (MQ=255)
                                                                             cGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCcgac                                                    <  1:1028909/140‑1 (MQ=255)
                                                                             cGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCcgac                                                    >  1:566035/1‑140 (MQ=255)
                                                                             cGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCcgac                                                    >  1:21387/1‑140 (MQ=255)
                                                                             cGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCcgac                                                    >  2:395507/1‑140 (MQ=255)
                                                                             cGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCcgac                                                    <  1:541339/140‑1 (MQ=255)
                                                                             cGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCcgac                                                    <  2:1234555/140‑1 (MQ=255)
                                                                               gCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCcgacga                                                  <  1:1006125/140‑1 (MQ=255)
                                                                               gCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCcgacga                                                  <  1:519690/140‑1 (MQ=255)
                                                                                cGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGaa                                                 <  1:395507/140‑1 (MQ=255)
                                                                                cGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGaa                                                 >  2:639973/1‑140 (MQ=255)
                                                                                 gAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAAc                                                >  1:1026786/1‑140 (MQ=255)
                                                                                  aaCCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACg                                               <  2:21387/140‑1 (MQ=255)
                                                                                       tCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAAt                                          <  2:1026786/140‑1 (MQ=255)
                                                                                         gCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCa                                        >  1:557374/1‑140 (MQ=255)
                                                                                             tCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACt                                    <  2:557374/140‑1 (MQ=255)
                                                                                                 tATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCggg                                <  2:339898/140‑1 (MQ=255)
                                                                                                  aTCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGt                               >  2:1117336/1‑140 (MQ=255)
                                                                                                      gCCAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGtcatt                           >  1:86325/1‑140 (MQ=255)
                                                                                                       ccAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGtcattc                          >  2:1001433/1‑140 (MQ=255)
                                                                                                       ccAGACGCAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGtcattc                          >  2:697354/1‑140 (MQ=255)
                                                                                                         aGACGCATGTTACCTCCCTGATTTCGAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGtcattcat                        <  2:860562/140‑1 (MQ=255)
                                                                                                              cAGGTTATCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGTCATTCATATCCg                   <  1:1216734/140‑1 (MQ=255)
                                                                                                                     tCTACCTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGTCATTCATATCCGCCAGGCt            >  2:795665/1‑140 (MQ=255)
                                                                                                                         ccTGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGTCATTCATATCCGCCAGGCTGGCg        >  2:541517/1‑140 (MQ=255)
                                                                                                                           tGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGTCATTCATATCCGCCAGGCTGGCGTc      >  1:227060/1‑140 (MQ=255)
                                                                                                                           tGATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGTCATTCATATCCGCCAGGCTGGCGTc      >  1:63778/1‑140 (MQ=255)
                                                                                                                            gATTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGTCATTCATATCCGCCAGGCTGGCGTCt     >  2:1033755/1‑140 (MQ=255)
                                                                                                                             aTTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGTCATTCATATCCGCCAGGCTGGCGTCTg    >  2:1155417/1‑140 (MQ=255)
                                                                                                                             aTTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGTCATTCATATCCGCCAGGCTGGCGTCTg    >  1:1067793/1‑140 (MQ=255)
                                                                                                                             aTTTGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGTCATTCATATCCGCCAGGCTGGCGTCTg    >  2:865204/1‑140 (MQ=255)
                                                                                                                               ttGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGTCATTCATATCCGCCAGGCTGGCGTCTGCa  <  1:1155417/140‑1 (MQ=255)
                                                                                                                               ttGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGTCATTCATATCCGCCAGGCTGGCGTCTGCa  <  1:639973/140‑1 (MQ=255)
                                                                                                                               ttGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGTCATTCATATCCGCCAGGCTGGCGTCTGCa  <  1:865204/140‑1 (MQ=255)
                                                                                                                               ttGAAAGCCGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGTCATTCATATCCGCCAGGCTGGCGTCTGCa  <  2:227060/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                   
AAGTTCTGCCAGCTTTTTTGCAGATTGATACGCCATTCGCTGATGGAACTGGAAAGCTCTTCACCGTCTGAATCCATCGGCGAACCATCGCTGTCATTATCGGCCAGACGCAGGTTATCTACCTGATTTGAAAGCTGATTAAGCTTAAGGATGATGCCGTCATAATCCACCTGCGATACTGCAGAAAGGCTGGCGATATCATCGGTAATTGCCCGACGAACGGTAATCAGACTCGGGTCATTCATATCCGCCAGGCTGGCGTCTGCA  >  NC_000913/3988309‑3988575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A