Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F28 I1 R1 121 68.4 2351762 99.3% 2335299 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,027,325 C→T intergenic (+97/+284) fre → / ← fadA flavin reductase/3‑ketoacyl‑CoA thiolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,027,3250CT100.0% 215.6 / NA 68intergenic (+97/+284)fre/fadAflavin reductase/3‑ketoacyl‑CoA thiolase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (31/37);  total (31/37)

GAAGATCGCCTGTTTGGCGATGCGTTTGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGT  >  NC_000913/4027190‑4027449
                                                                                                                                       |                                                                                                                            
gAAGATCGCCTGTTTGGCGATGCGTTTGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATg                                                                                                                          <  2:1106137/140‑1 (MQ=255)
     tCGCCTGTTTGGCGATGCGTTTGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACg                                                                                                                     >  2:111018/1‑140 (MQ=255)
        ccTGTTTGGCGATGCGTTTGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTg                                                                                                                  >  2:995130/1‑140 (MQ=255)
          tttttGGGGATGCTTTTGCATTTATCTGAGATAAAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTc                                                                                                                <  2:547375/138‑1 (MQ=255)
          tGTTTGGCGATGCGTTTGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTc                                                                                                                >  2:90485/1‑140 (MQ=255)
          tGTTTGGCGATGCGTTTGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTc                                                                                                                >  2:508805/1‑140 (MQ=255)
            tttGGCGATGCGTTTGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTcgc                                                                                                              >  2:1059049/1‑140 (MQ=255)
                 cGATGCGTTTGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCCGTCGCGTCtt                                                                                                         >  1:308590/1‑140 (MQ=255)
                   aTGCGTTTGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTAt                                                                                                       >  1:547375/1‑140 (MQ=255)
                    tGCGTTTGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATc                                                                                                      >  2:100628/1‑140 (MQ=255)
                     gCGTTTGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCg                                                                                                     <  1:302330/140‑1 (MQ=255)
                     gCGTTTGATTTTATCTGAGATATAAAAAAGCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCg                                                                                                     <  1:803530/140‑1 (MQ=255)
                       gTTTGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTg                                                                                                   <  2:468838/140‑1 (MQ=255)
                         ttGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGcc                                                                                                 <  1:401518/140‑1 (MQ=255)
                           gCATTTATCTGAGATAAAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTa                                                                                               <  2:177225/140‑1 (MQ=255)
                              tttATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACaa                                                                                            <  1:111018/140‑1 (MQ=255)
                               ttATCTGAGATATAAAAAACCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACaaa                                                                                           <  1:529641/140‑1 (MQ=255)
                                tATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACaaaa                                                                                          >  1:313559/1‑139 (MQ=255)
                                      agaTATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCg                                                                                    >  1:422475/1‑140 (MQ=255)
                                      agaTATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCg                                                                                    >  1:538405/1‑140 (MQ=255)
                                           taAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCg                                                                               <  1:90485/140‑1 (MQ=255)
                                           aaaaaaaaCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCg                                                                               <  1:1143935/139‑1 (MQ=255)
                                           aaaaaaaaCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCg                                                                               <  1:100628/139‑1 (MQ=255)
                                           aaaaaaaaCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCg                                                                               <  1:531731/139‑1 (MQ=255)
                                           aaaaaaaaCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCg                                                                               <  1:508805/139‑1 (MQ=255)
                                           aaaaaaaaCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCg                                                                               <  1:44062/139‑1 (MQ=255)
                                            aaaaaaaCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAAAAATCCCAAACgc                                                                              >  2:585102/1‑139 (MQ=38)
                                                aaccccGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGc                                                                          <  1:585102/137‑1 (MQ=255)
                                                aaaCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGc                                                                          <  1:950639/140‑1 (MQ=255)
                                                     cGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGAt                                                                     <  1:1059049/140‑1 (MQ=255)
                                                                 gCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTAcg                                                         >  2:129397/1‑140 (MQ=255)
                                                                  cGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTAcgc                                                        >  1:1043879/1‑140 (MQ=255)
                                                                  cGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTAcgc                                                        >  2:408366/1‑140 (MQ=255)
                                                                       agaaCGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCAt                                                   >  2:795396/1‑140 (MQ=255)
                                                                       agaaCGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCAt                                                   <  1:129397/140‑1 (MQ=255)
                                                                         aaCGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATcc                                                 >  2:785233/1‑140 (MQ=255)
                                                                           cGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                                               <  1:785233/140‑1 (MQ=255)
                                                                           cGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                                               >  1:575465/1‑140 (MQ=255)
                                                                              cAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa                                            <  2:422475/140‑1 (MQ=255)
                                                                               aaCTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAt                                           <  2:628276/140‑1 (MQ=255)
                                                                               aaCTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAt                                           <  1:836558/140‑1 (MQ=255)
                                                                                         ttATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCatga                                 >  2:647925/1‑140 (MQ=255)
                                                                                              cAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCt                            >  1:1039200/1‑140 (MQ=255)
                                                                                               aGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa                                            <  1:806937/123‑1 (MQ=255)
                                                                                               aGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGAGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa                                            >  2:806937/1‑123 (MQ=255)
                                                                                                 tGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGAt                         >  2:1072700/1‑140 (MQ=255)
                                                                                                 tGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGAt                         >  1:1090342/1‑140 (MQ=255)
                                                                                                 tGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGAt                         >  2:118614/1‑140 (MQ=255)
                                                                                                  ggCATTTAGATCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATg                        <  2:239378/140‑1 (MQ=255)
                                                                                                           aTCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTgg               <  1:647925/140‑2 (MQ=255)
                                                                                                           aTCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTgg               <  1:995130/140‑2 (MQ=255)
                                                                                                           aTCTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTgg               <  1:1072700/140‑2 (MQ=255)
                                                                                                             cTATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGcg             >  2:265342/1‑140 (MQ=255)
                                                                                                              tATGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGgcgc            <  2:575465/140‑1 (MQ=255)
                                                                                                               aTGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGcgcg           <  2:171192/140‑1 (MQ=255)
                                                                                                                tGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGt          >  2:302736/1‑140 (MQ=255)
                                                                                                                tGACGTATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCAGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGt          >  2:1036736/1‑140 (MQ=255)
                                                                                                                     tATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTAt     <  1:795396/140‑1 (MQ=19)
                                                                                                                     tATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTAt     <  1:782862/140‑1 (MQ=19)
                                                                                                                     tATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTAt     >  2:830428/1‑140 (MQ=25)
                                                                                                                     tATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTAt     <  1:669074/140‑1 (MQ=19)
                                                                                                                     tATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTAt     <  2:1043879/140‑1 (MQ=19)
                                                                                                                     tATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTAt     >  1:556881/1‑140 (MQ=19)
                                                                                                                     tATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTAt     >  1:1080826/1‑140 (MQ=19)
                                                                                                                     tATCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTAt     <  2:390138/140‑1 (MQ=19)
                                                                                                                      aTCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTAt     >  1:243600/1‑139 (MQ=21)
                                                                                                                      aTCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTAt     <  2:243600/139‑1 (MQ=21)
                                                                                                                       tCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATca   >  2:155239/1‑139 (MQ=12)
                                                                                                                       tCTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATca   >  1:127816/1‑139 (MQ=12)
                                                                                                                        cTGGCAAACCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATcag  <  2:312931/140‑3 (MQ=2)
                                                                                                                                       |                                                                                                                            
GAAGATCGCCTGTTTGGCGATGCGTTTGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGT  >  NC_000913/4027190‑4027449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A