Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	120	93.5	3664254	88.3%	3235536	136.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,497,591	T→C	F246L (TTC→CTC)	opgD →	glucan biosynthesis protein D

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,497,591	0	T	C	98.9%	343.4 / ‑4.9	93	F246L (TTC→CTC)	opgD	glucan biosynthesis protein D
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (50/42); total (51/42)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

TACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGTTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGATG  >  NC_000913/1497465‑1497725

tACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCAt                                                                                                                             >  2:897392/1‑138 (MQ=255)

tACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCAt                                                                                                                             >  1:1570060/1‑138 (MQ=255)

tACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCAt                                                                                                                             >  2:105889/1‑138 (MQ=255)

  cacCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATtg                                                                                                                           >  2:667830/1‑138 (MQ=255)

   acCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATtgt                                                                                                                          >  1:1295479/1‑138 (MQ=255)

    ccGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATtgtg                                                                                                                         >  2:789952/1‑138 (MQ=255)

    ccGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATtgtg                                                                                                                         >  1:46311/1‑138 (MQ=255)

         aGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGaaa                                                                                                                    >  1:384694/1‑138 (MQ=255)

         aGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGaaa                                                                                                                    <  1:998877/138‑1 (MQ=255)

          gTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGaaaa                                                                                                                   <  2:1381664/138‑1 (MQ=255)

          gTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGaaaa                                                                                                                   <  1:623165/138‑1 (MQ=255)

            aaaGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGt                                                                                                                 <  2:384694/138‑1 (MQ=255)

             aagaagAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTga                                                                                                                        <  1:1469756/130‑1 (MQ=255)

             aagaagAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTga                                                                                                                        >  2:1469756/1‑130 (MQ=255)

             aagaagAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTc                                                                                                                >  1:137726/1‑138 (MQ=255)

             aagaagAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTc                                                                                                                <  1:410987/138‑1 (MQ=255)

             aagaagAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTc                                                                                                                <  2:1570060/138‑1 (MQ=255)

             aagaagAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTc                                                                                                                <  1:897392/138‑1 (MQ=255)

             aagaagAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTc                                                                                                                <  1:1188264/138‑1 (MQ=255)

             aagaagAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTc                                                                                                                <  1:789952/138‑1 (MQ=255)

             aagaagAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTc                                                                                                                >  1:1670890/1‑138 (MQ=255)

             aagaagAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTc                                                                                                                <  1:620817/138‑1 (MQ=255)

             aagaagAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTc                                                                                                                <  1:527572/138‑1 (MQ=255)

              agaagaGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCa                                                                                                               <  2:1392553/138‑1 (MQ=255)

               gaagaGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAg                                                                                                              <  1:1683058/138‑1 (MQ=255)

                    gTTCCCCGACTTTACCGCCTTCTGGTTCGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGAt                                                                                                         >  2:981137/1‑138 (MQ=255)

                       ccccGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATtgt                                                                                                                          >  1:1020597/1‑118 (MQ=255)

                       ccccGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATtgt                                                                                                                          <  2:1020597/118‑1 (MQ=255)

                       ccccGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTc                                                                                                                >  2:1075601/1‑128 (MQ=255)

                       ccccGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTc                                                                                                                <  1:1075601/128‑1 (MQ=255)

                         ccGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGa                                                                                                          <  1:330744/132‑1 (MQ=255)

                         ccGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGa                                                                                                          >  2:330744/1‑132 (MQ=255)

                         ccGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATgg                                                                                                    >  1:1120345/1‑138 (MQ=255)

                                   cGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGaaaa                                                                                          >  1:604844/1‑138 (MQ=255)

                                     ccTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATc                                                                                        <  1:999915/138‑1 (MQ=255)

                                            gTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTa                                                                                 <  1:948932/138‑1 (MQ=255)

                                                      gTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCaaa                                                                       <  1:1339378/138‑1 (MQ=255)

                                                        aaaaCCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGa                                                                     >  2:617536/1‑138 (MQ=255)

                                                           aCCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACAt                                                                  <  2:137726/138‑1 (MQ=255)

                                                             cGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTa                                                                >  2:1288529/1‑138 (MQ=255)

                                                                 ggCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACa                                                            >  2:86957/1‑138 (MQ=255)

                                                                   cAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGc                                                          >  2:1740874/1‑138 (MQ=255)

                                                                          cTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCAt                                                   <  2:1295479/138‑1 (MQ=255)

                                                                                cGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGcc                                             >  2:1692904/1‑138 (MQ=255)

                                                                                 gTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCg                                            <  2:925220/138‑1 (MQ=255)

                                                                                     aTGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGAt                                          >  1:1481580/1‑136 (MQ=255)

                                                                                     aTGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGAt                                          <  2:1481580/136‑1 (MQ=255)

                                                                                     aTGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGa                                        >  1:1682355/1‑138 (MQ=255)

                                                                                     aTGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGa                                        <  2:512563/138‑1 (MQ=255)

                                                                                     aTGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGa                                        <  1:981137/138‑1 (MQ=255)

                                                                                     aTGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGa                                        >  1:512563/1‑138 (MQ=255)

                                                                                      tGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGAt                                          <  1:1539053/135‑1 (MQ=255)

                                                                                      tGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGAt                                          >  2:1539053/1‑135 (MQ=255)

                                                                                        cGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCa                                     <  1:1692904/138‑1 (MQ=255)

                                                                                        cGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGAAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCACTGCGCCGATGACCa                                     <  2:422174/138‑1 (MQ=255)

                                                                                         gTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAg                                    >  2:1555172/1‑138 (MQ=255)

                                                                                             cTCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATg                                >  2:1107139/1‑138 (MQ=255)

                                                                                              tCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGt                               >  1:298357/1‑138 (MQ=255)

                                                                                              tCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGt                               <  1:923843/138‑1 (MQ=255)

                                                                                              tCGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGt                               >  1:1558468/1‑138 (MQ=255)

                                                                                               cGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGtt                              >  2:1755204/1‑138 (MQ=255)

                                                                                               cGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGtt                              >  1:1075953/1‑138 (MQ=255)

                                                                                               cGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGtt                              >  1:1432734/1‑138 (MQ=255)

                                                                                               cGATAGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGtt                              >  1:590306/1‑138 (MQ=255)

                                                                                                   aGCGCCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGc                          <  2:1682355/138‑1 (MQ=255)

                                                                                                     cgcCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTg                        <  1:783757/138‑1 (MQ=255)

                                                                                                     cgcCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTg                        <  1:1555172/138‑1 (MQ=255)

                                                                                                      gcCAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGc                       <  2:1670890/138‑1 (MQ=255)

                                                                                                       ccAGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCg                      >  1:832192/1‑138 (MQ=255)

                                                                                                         aGCATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGt                    >  1:417904/1‑138 (MQ=255)

                                                                                                           cATTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTAc                  <  2:604844/138‑1 (MQ=255)

                                                                                                            aTTACTGGTGCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACt                 <  2:590306/138‑1 (MQ=255)

                                                                                                                     gCCTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGt        >  1:147720/1‑138 (MQ=255)

                                                                                                                      ccTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTc       <  1:501276/138‑1 (MQ=255)

                                                                                                                       cTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACt                 >  1:1310906/1‑127 (MQ=255)

                                                                                                                       cTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACt                 <  2:1310906/127‑1 (MQ=255)

                                                                                                                       cTATAAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCg      >  2:860674/1‑138 (MQ=255)

                                                                                                                        tataAGTTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCgg     >  1:97725/1‑138 (MQ=255)

                                                                                                                        tataAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCTCCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCgg     <  1:1435809/138‑1 (MQ=255)

                                                                                                                        tataAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCgg     >  1:1806179/1‑138 (MQ=255)

                                                                                                                        tataAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCgg     >  1:1180710/1‑138 (MQ=255)

                                                                                                                        tataAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCgg     >  2:35353/1‑138 (MQ=255)

                                                                                                                        tataAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCgg     >  2:1573539/1‑138 (MQ=255)

                                                                                                                        tataAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCgg     >  2:1095893/1‑138 (MQ=255)

                                                                                                                        tataAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCgg     >  2:1147850/1‑138 (MQ=255)

                                                                                                                        tataAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCgg     >  2:1451128/1‑138 (MQ=255)

                                                                                                                        tataAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCgg     >  2:1417286/1‑138 (MQ=255)

                                                                                                                        tataAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATT‑AACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGa    >  2:568408/1‑138 (MQ=255)

                                                                                                                         ataAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGa    <  1:1288529/138‑1 (MQ=255)

                                                                                                                          taAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGAt   >  1:1625656/1‑138 (MQ=255)

                                                                                                                          taAGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGAt   >  1:428750/1‑138 (MQ=255)

                                                                                                                           aaGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGAtg  <  2:1120345/138‑1 (MQ=255)

                                                                                                                           aaGCTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGAtg  <  1:1107139/138‑1 (MQ=255)

TACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGCCAGCATTACTGGTGCCTATAAGTTCACTATCCATTGTGAGAAAAGTCAGGTGATTATGGATGTGGAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGATG  >  NC_000913/1497465‑1497725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A