Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,502,123	C→T	R188C (CGT→TGT)	tehB →	tellurite methyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,502,123	0	C	T	100.0%	354.1 / NA	99	R188C (CGT→TGT)	tehB	tellurite methyltransferase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (60/39); total (60/39)

TACCGTCGGCTTCCCGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGCGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAGGGATGTGAAATTAATCACA  >  NC_000913/1501990‑1502259

tACCGTCGGCTTCCCGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCg                                                                                                                                    >  1:492144/1‑140 (MQ=255)

   cGTCGGCTTCCCGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCa                                                                                                                                 <  1:1102214/140‑1 (MQ=255)

   cGTCGGCTTCCCGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCa                                                                                                                                 <  1:583701/140‑1 (MQ=255)

    gTCGGCTTCCCGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCAc                                                                                                                                >  2:412245/1‑140 (MQ=255)

     tCGGCTTCCCGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGc                                                                                                                                   >  2:1584367/1‑136 (MQ=255)

     tCGGCTTCCCGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGc                                                                                                                                   <  1:1584367/136‑1 (MQ=255)

     tCGGCTTCCCGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCa                                                                                                                                 <  2:39017/138‑1 (MQ=255)

     tCGGCTTCCCGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCa                                                                                                                                 >  1:39017/1‑138 (MQ=255)

     tCGGCTTCCCGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACg                                                                                                                               >  1:695585/1‑140 (MQ=255)

     tCGGCTTCCCGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACg                                                                                                                               >  2:916709/1‑140 (MQ=255)

     tCGGCTTCCCGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACg                                                                                                                               >  2:1661002/1‑140 (MQ=255)

      cGGCTTCCCGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGa                                                                                                                              >  1:956773/1‑140 (MQ=255)

         cTTCCCGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGc                                                                                                                           >  1:1239842/1‑140 (MQ=255)

          ttCCCGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCt                                                                                                                          >  1:550221/1‑140 (MQ=255)

          ttCCCGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAACACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCt                                                                                                                          >  2:1135654/1‑140 (MQ=255)

             ccGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGc                                                                                                                       >  1:1436612/1‑140 (MQ=255)

                           agagGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGAc                                                                                                         <  2:1582657/140‑1 (MQ=255)

                           agagGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGAc                                                                                                         <  2:653419/140‑1 (MQ=255)

                              gggAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCg                                                                                                      >  1:386627/1‑140 (MQ=255)

                                 agaATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTa                                                                                                   <  1:1632661/140‑1 (MQ=255)

                                 agaATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTa                                                                                                   <  1:412245/140‑1 (MQ=255)

                                   aaTTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAg                                                                                                 >  1:687758/1‑140 (MQ=255)

                                       aCGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGcaca                                                                                             >  2:581433/1‑140 (MQ=255)

                                       aCGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGcaca                                                                                             <  1:737737/140‑1 (MQ=255)

                                       aCGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGcaca                                                                                             >  1:37344/1‑140 (MQ=255)

                                          tCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGAc                                                                                                         <  2:969136/125‑1 (MQ=255)

                                          tCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGAc                                                                                                         >  1:969136/1‑125 (MQ=255)

                                            gATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAAcg                                                                                        >  2:315459/1‑140 (MQ=255)

                                             atatTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAAcgc                                                                                       >  1:753692/1‑140 (MQ=255)

                                              tatTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAAcgcg                                                                                      <  2:1239842/140‑1 (MQ=255)

                                              tatTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAAcgcg                                                                                      <  1:315459/140‑1 (MQ=255)

                                               atTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGt                                                                                     <  2:550221/140‑1 (MQ=255)

                                               atTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGt                                                                                     <  2:386627/140‑1 (MQ=255)

                                                   cGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGaaa                                                                                 >  2:403209/1‑140 (MQ=255)

                                                      aGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAAtt                                                                              >  2:400744/1‑140 (MQ=255)

                                                       ggCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTc                                                                             >  2:1701344/1‑140 (MQ=255)

                                                        gCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTcc                                                                            >  2:285440/1‑140 (MQ=255)

                                                        gCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTcc                                                                            >  2:822014/1‑140 (MQ=255)

                                                        gCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTcc                                                                            >  1:1009734/1‑140 (MQ=255)

                                                         cTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTccc                                                                           <  2:37344/140‑1 (MQ=255)

                                                         cTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTccc                                                                           <  1:822014/140‑1 (MQ=255)

                                                           gggAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCa                                                                         >  2:1136802/1‑140 (MQ=255)

                                                            ggAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCAc                                                                        >  1:710369/1‑140 (MQ=255)

                                                             gagaGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACg                                                                       <  1:403209/140‑1 (MQ=255)

                                                                agGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTg                                                                    >  1:1498144/1‑140 (MQ=255)

                                                                agGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTg                                                                    <  1:1690002/140‑1 (MQ=255)

                                                                  ggcgAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTgca                                                                  >  2:1446744/4‑138 (MQ=255)

                                                                  ggTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTgag                                                                  >  1:1174523/1‑140 (MQ=255)

                                                                  ggTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTgag                                                                  >  2:1343300/1‑140 (MQ=255)

                                                                  ggTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTgag                                                                  >  2:631180/1‑140 (MQ=255)

                                                                  ggTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTgag                                                                  >  2:1199572/1‑140 (MQ=255)

                                                                  ggTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTgag                                                                  >  2:1526695/1‑140 (MQ=255)

                                                                  ggTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCAGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTgag                                                                  >  1:1028572/1‑140 (MQ=255)

                                                                   gTGAAACACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTgaga                                                                 <  1:1135654/140‑1 (MQ=255)

                                                                        aTACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGAtt                                                            <  1:285440/140‑1 (MQ=255)

                                                                        aTACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGAtt                                                            <  2:1174523/140‑1 (MQ=255)

                                                                             aTGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTg                                                       >  2:54845/1‑140 (MQ=255)

                                                                              tGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTg                                                                    >  2:1690808/1‑126 (MQ=255)

                                                                              tGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTg                                                                    <  1:1690808/126‑1 (MQ=255)

                                                                              tGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGt                                                      >  2:537469/1‑140 (MQ=255)

                                                                               gAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGtt                                                     <  1:1019825/140‑1 (MQ=255)

                                                                                aaGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTg                                                                    >  2:1209305/1‑124 (MQ=255)

                                                                                aaGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGttc                                                    >  2:1187772/1‑140 (MQ=255)

                                                                                aaGACGCCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTg                                                                    <  1:1209305/124‑1 (MQ=255)

                                                                                 aGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGttct                                                   >  2:59077/1‑140 (MQ=255)

                                                                                   aCGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGttcttc                                                 >  2:36622/1‑140 (MQ=255)

                                                                                    cGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTtcttct                                                >  2:570047/1‑140 (MQ=255)

                                                                                     gTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTcttctt                                               >  2:1015835/1‑140 (MQ=255)

                                                                                     gTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTcttctt                                               >  1:1230170/1‑140 (MQ=255)

                                                                                     gTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTcttctt                                               >  1:1093933/1‑140 (MQ=255)

                                                                                      tCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTa                                                          >  2:1570218/1‑128 (MQ=255)

                                                                                      tCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTa                                                          <  1:1570218/128‑1 (MQ=255)

                                                                                          cGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCgg                                          >  2:231240/1‑140 (MQ=255)

                                                                                           gAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGt                                         <  2:1436612/140‑1 (MQ=255)

                                                                                           gAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGt                                         <  1:1661002/140‑1 (MQ=255)

                                                                                           gAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGt                                         <  2:687758/140‑1 (MQ=255)

                                                                                            aGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTa                                        >  1:1259294/1‑140 (MQ=255)

                                                                                                 caccgcaccgACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGATCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCat                                   >  2:990977/1‑140 (MQ=255)

                                                                                                   ccgcaccgACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCatat                                 >  1:582309/1‑140 (MQ=255)

                                                                                                      caccgACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATAtttt                              >  2:300871/1‑140 (MQ=255)

                                                                                                      caccgACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATAtttt                              >  2:729550/1‑140 (MQ=255)

                                                                                                         cgACGCCAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTa                           >  2:1255463/1‑140 (MQ=255)

                                                                                                              ccAACGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCAGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGaa                      <  2:1028572/140‑1 (MQ=255)

                                                                                                                 aCGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAggg                   <  2:1259294/140‑1 (MQ=255)

                                                                                                                 aCGGTAATCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAggg                   <  1:300871/140‑1 (MQ=255)

                                                                                                                      aaTCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAGGGAtgtg              <  2:1009734/140‑1 (MQ=255)

                                                                                                                       aTCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAGGGATGTGa             >  1:1434020/1‑140 (MQ=255)

                                                                                                                       aTCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAGGGATGTGa             >  1:824525/1‑140 (MQ=255)

                                                                                                                        tCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAGGGATGTGaa            >  2:435132/1‑140 (MQ=255)

                                                                                                                        tCGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAGGGATGTGaa            <  1:581433/140‑1 (MQ=255)

                                                                                                                         cGTATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAGGGATGTGaaa           <  1:59077/140‑1 (MQ=255)

                                                                                                                           tATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAGGGATGTGAAAtt         <  2:492144/140‑1 (MQ=255)

                                                                                                                           tATTAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAGGGATGTGAAAtt         >  1:929581/1‑140 (MQ=255)

                                                                                                                             ttAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAGGGATGTGAAATTaa       >  1:1476247/1‑140 (MQ=255)

                                                                                                                             ttAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAGGGATGTGAAATTaa       >  1:919372/1‑140 (MQ=255)

                                                                                                                             ttAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAGGGATGTGAAATTaa       >  2:1502463/1‑140 (MQ=255)

                                                                                                                              tAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAGGGATGTGAAATTAAt      <  1:1343300/140‑1 (MQ=255)

                                                                                                                              tAAACTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAGGGATGTGAAATTAAt      <  1:1607570/140‑1 (MQ=255)

                                                                                                                                  cTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAGGGATGTGAAATTAATcaca  <  2:710369/140‑1 (MQ=255)

                                                                                                                                  cTGTGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAGGGATGTGAAATTAATcaca  <  1:36622/140‑1 (MQ=255)

TACCGTCGGCTTCCCGTTTGCCTTCAAAGAGGGAGAATTACGTCGATATTACGAAGGCTGGGAGAGGGTGAAATACAATGAAGACGTCGGCGAGCTGCACCGCACCGACGCCAACGGTAATCGTATTAAACTGCGTTTCGCCACGATGCTGGCACGTAAAAAATGACCCGGTAAGCACAAAACGCGTGAAAATTCCCCACGCTGAGATGATTTACTGTTCTTCTTTTCGGTAAGCATATTTTTTATCGAAGGGATGTGAAATTAATCACA  >  NC_000913/1501990‑1502259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A