Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	191	83.5	2830284	99.3%	2810472	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,504,102	(A)_5→4	coding (386/1149 nt)	insQ →	putative insertion element transposase InsQ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,504,098	0	A	.	100.0%	290.6 / NA	67	coding (382/1149 nt)	insQ	putative insertion element transposase InsQ
Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (27/40); total (27/40)

CCGATTCAAAAAGCGGGGACAGAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTGAAAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGTCGGGCTGGATGCTGGCGTGGCTAAACTCGCCACGCTGT  >  NC_000913/1503959‑1504233

ccGATTCAAAAAGCGGGGACAGAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTGa                                                                                                                                         <  2:1201014/140‑1 (MQ=255)

 cGATTCAAAAAGCGGGGACAGAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTGaa                                                                                                                                        >  1:337175/1‑140 (MQ=255)

 cGATTCAAAAAGCGGGGACAGAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTGaa                                                                                                                                        <  1:1048766/140‑1 (MQ=255)

   aTTCAAAAAGCGGGGACAGAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTGaaaa                                                                                                                                      >  2:924655/1‑140 (MQ=255)

   aTTCAAAAAGCGGGGACAGAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTGaaaa                                                                                                                                      >  2:836315/1‑140 (MQ=255)

      cAAAAAGCGGGGACAGAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTGaaaatgt                                                                                                                                   <  1:39497/140‑4 (MQ=255)

              ggggACAGAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCa                                                                                                                          >  1:1066893/1‑140 (MQ=255)

               gggACAGAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAg                                                                                                                         >  1:1194154/1‑140 (MQ=255)

                ggACAGAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGc                                                                                                                        <  2:845735/140‑1 (MQ=255)

                ggACAGAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGACAGc                                                                                                                        <  1:1275993/140‑1 (MQ=255)

                  aCAGAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCa                                                                                                                      >  1:1114111/1‑140 (MQ=255)

                   cAGAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAg                                                                                                                     >  2:208964/1‑140 (MQ=255)

                    aGAAGGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGt                                                                                                                    <  1:874324/140‑1 (MQ=255)

                     gAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTc                                                                                                                   <  1:365738/140‑1 (MQ=255)

                     gAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTc                                                                                                                   <  1:373156/140‑1 (MQ=255)

                     gAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTc                                                                                                                   <  1:1328442/140‑1 (MQ=255)

                           tgCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCgg                                                                                                             >  1:262378/1‑140 (MQ=255)

                           tgCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCgg                                                                                                             >  1:458026/1‑140 (MQ=255)

                           tgCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACAGTCAGc                                                                                                                        <  1:1345809/129‑1 (MQ=255)

                           tgCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACAGTCAGc                                                                                                                        >  2:1345809/1‑129 (MQ=255)

                            gCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGt                                                                                                            <  1:296231/140‑1 (MQ=255)

                            gCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGt                                                                                                            <  2:1066893/140‑1 (MQ=255)

                             ttttCCGCTCCCCGCGGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGtg                                                                                                           <  2:471711/138‑2 (MQ=255)

                             cATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTa                                                                                                           <  1:836315/140‑1 (MQ=255)

                               ttCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAg                                                                                                         <  1:60479/140‑1 (MQ=255)

                                tCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGt                                                                                                        >  1:1014521/1‑140 (MQ=255)

                                  cGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTgg                                                                                                      <  1:1016796/140‑1 (MQ=255)

                                    cTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTa                                                                                                    <  2:1169584/140‑1 (MQ=255)

                                    cTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTa                                                                                                    <  2:458026/140‑1 (MQ=255)

                                    cTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTa                                                                                                    <  2:902306/140‑1 (MQ=255)

                                    cTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTa                                                                                                    >  2:955040/1‑140 (MQ=255)

                                    cTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTa                                                                                                    <  1:1379498/140‑1 (MQ=255)

                                       cccGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAg                                                                                                         <  1:1376847/132‑1 (MQ=255)

                                       cccGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAg                                                                                                         >  2:1376847/1‑132 (MQ=255)

                                              ggCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTAtt                                                                                          >  1:424881/1‑140 (MQ=255)

                                                 gTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTcag                                                                                       >  2:919287/1‑140 (MQ=255)

                                                 gTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTcag                                                                                       >  2:466737/1‑140 (MQ=255)

                                                  ttAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTcaga                                                                                      >  1:411517/1‑140 (MQ=255)

                                                  ttAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTcaga                                                                                      >  2:1338944/1‑140 (MQ=255)

                                                      gCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTcagacaga                                                                                  <  1:303408/140‑1 (MQ=255)

                                                        tCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATc                                                                                                >  2:1340013/1‑124 (MQ=255)

                                                        tCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATc                                                                                                <  1:1340013/124‑1 (MQ=255)

                                                        tCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGaaa                                                                                <  1:924655/140‑1 (MQ=255)

                                                          gATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGt                                                                              >  1:1310524/1‑140 (MQ=255)

                                                           aTCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTg                                                                             <  2:411517/140‑1 (MQ=255)

                                                            tCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGTGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGa                                                                            >  2:324481/1‑140 (MQ=255)

                                                            tCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGa                                                                            <  2:1114111/140‑1 (MQ=255)

                                                            tCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGa                                                                            <  2:189040/140‑1 (MQ=255)

                                                                  aaaCAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATc                                                                      <  2:1310524/140‑1 (MQ=255)

                                                                    aCAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCaa                                                                    <  1:973040/140‑1 (MQ=255)

                                                                      aGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACt                                                                  >  1:1072724/1‑140 (MQ=255)

                                                                        ccGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTcc                                                                >  1:1335575/1‑140 (MQ=255)

                                                                              ttttCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCa                                                          <  2:1194154/140‑1 (MQ=255)

                                                                              ttttCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCa                                                          <  2:150304/140‑1 (MQ=255)

                                                                                  cTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCt                                                      >  2:1214192/1‑140 (MQ=255)

                                                                                     ccGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCa                                                   <  1:919287/140‑1 (MQ=255)

                                                                                                cTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGt                                        <  2:1335575/140‑1 (MQ=255)

                                                                                                  ggATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGTCg                                      <  1:1338944/140‑1 (MQ=255)

                                                                                                    aTGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGTCggg                                    <  2:1132113/140‑1 (MQ=255)

                                                                                                      gcgcTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCTCCCTTCAGCATCAATGGTCGGGCt                                  <  2:1390853/140‑1 (MQ=255)

                                                                                                      gcgcTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGTCGGGCt                                  <  2:262378/140‑1 (MQ=255)

                                                                                                      gcgcTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGTCGGGCt                                  <  2:337175/140‑1 (MQ=255)

                                                                                                        gcTACCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGTCGGGCTgg                                >  1:1293106/1‑140 (MQ=255)

                                                                                                           aCCGGAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGTCGGGCTGGATg                             <  2:1077428/140‑1 (MQ=255)

                                                                                                               gAACAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGTCGGGCTGGATGCTgg                         <  1:1214192/140‑1 (MQ=255)

                                                                                                                 aCAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGTCGGGCTGGATGCTGGCg                       <  1:324481/140‑1 (MQ=255)

                                                                                                                  cAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGTCGGGCTGGATGCTGGCGt                      >  2:1248138/1‑140 (MQ=255)

                                                                                                                  cAGCCGTCAGGTCACGGGTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGTCGGGCTGGATGCTGGCGt                      >  2:1048685/1‑140 (MQ=255)

                                                                                                                                  ggTGTTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGTCGGGCTGGATGCTGGCGTGGCTAAACTCGCCACg      >  1:725578/1‑140 (MQ=255)

                                                                                                                                   gtgtTGTG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGTCGGGCTGGATGCTGGCGTGGCTAAACTCGCCACGc     <  1:955040/140‑1 (MQ=255)

                                                                                                                                     gttgtG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGTCGGGCTGGATGCTGGCGTGGCTAAACTCGCCACGCTg   <  2:424881/140‑1 (MQ=255)

                                                                                                                                      ttgtG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGTCGGGCTGGATGCTGGCGTGGCTAAACTCGCCACGCTGt  >  2:1100562/1‑140 (MQ=255)

                                                                                                                                      ttgtG‑AAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGTCGGGCTGGATGCTGGCGTGGCTAAACTCGCCACGCTGt  >  1:262086/1‑140 (MQ=255)

CCGATTCAAAAAGCGGGGACAGAATGATGCATTCCGCTACCCGCAGGGCGTTAAGCTCGATCAGGAAAACAGCCGTATTTTTCTGCCGAAACTGGGCTGGATGCGCTACCGGAACAGCCGTCAGGTCACGGGTGTTGTGAAAAATGTCACTGTCAGCCAGTCCTGCGGTAAGTGGTACATCAGTATTCAGACAGAAAGTGAAGTATCAACTCCGGTTCACCCTTCAGCATCAATGGTCGGGCTGGATGCTGGCGTGGCTAAACTCGCCACGCTGT  >  NC_000913/1503959‑1504233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A