Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	159	82.1	2830106	99.3%	2810295	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,508,902	A→G	S55P (TCG→CCG)	yncJ ←	protein YncJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,508,902	0	A	G	100.0%	334.3 / NA	90	S55P (TCG→CCG)	yncJ	protein YncJ
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (46/44); total (46/44)

ATTGAATCTGCATGATATTGCCTGCCGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGACTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATA  >  NC_000913/1508772‑1509036

aTTGAATCTGCATGATATTGCCTGCCGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGc                                                                                                                               >  1:437252/1‑140 (MQ=255)

aTTGAATCTGCATGATATTGCCTGCCGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGc                                                                                                                               >  2:926202/1‑140 (MQ=255)

aTTGAATCTGCATGATATTGCCTGCCGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGc                                                                                                                               >  2:456099/1‑140 (MQ=255)

 ttGAATCTGCATGATATTGCCTGCCGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGcc                                                                                                                              >  2:1247843/1‑140 (MQ=255)

    aaTCTGCATGATATTGCCTGCCGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCcaca                                                                                                                           <  1:221011/140‑1 (MQ=255)

          cATGATATTGCCTGCCGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGc                                                                                                                     >  1:894234/1‑140 (MQ=255)

          cATGATATTGCCTGCCGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGc                                                                                                                     >  2:569486/1‑140 (MQ=255)

                  tgcctgccGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTTGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATc                                                                                                             >  1:134460/1‑140 (MQ=255)

                  tgcctgccGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATc                                                                                                             >  1:83756/1‑140 (MQ=255)

                  tgcctgccGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATc                                                                                                             >  1:1274209/1‑140 (MQ=255)

                    cctgccGGGTAAGGCGTTACACCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGc                                                                                                           >  2:533955/1‑140 (MQ=255)

                      tgccGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTg                                                                                                         >  1:274287/1‑140 (MQ=255)

                       gccGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGt                                                                                                        >  2:1099753/1‑140 (MQ=255)

                       gccGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGCTGTCCCGCTTCTGGGTTGCGCGATTTTTGCCAATAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAAGTCATCGCtct                                                                                                        >  2:934786/1‑138 (MQ=255)

                        ccGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTc                                                                                                       >  1:588032/1‑140 (MQ=255)

                        ccGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTc                                                                                                       >  2:184595/1‑140 (MQ=255)

                        ccGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTc                                                                                                       >  1:218731/1‑140 (MQ=255)

                        ccGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTc                                                                                                       >  2:935366/1‑140 (MQ=255)

                         cGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCt                                                                                                          >  2:666749/1‑136 (MQ=255)

                         cGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCt                                                                                                          <  1:666749/136‑1 (MQ=255)

                         cGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCt                                                                                                          >  2:898286/1‑136 (MQ=255)

                         cGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCt                                                                                                          <  1:898286/136‑1 (MQ=255)

                         cGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTcc                                                                                                      >  1:748111/1‑140 (MQ=255)

                         cGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTcc                                                                                                      >  2:1087268/1‑140 (MQ=255)

                         cGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTcc                                                                                                      >  2:959616/1‑140 (MQ=255)

                         cGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTcc                                                                                                      >  2:14851/1‑140 (MQ=255)

                         cGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTcc                                                                                                      >  1:194854/1‑140 (MQ=255)

                          gggTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCg                                                                                                     <  2:1274209/140‑1 (MQ=255)

                           ggTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGc                                                                                                    >  1:848114/1‑140 (MQ=255)

                            gTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCt                                                                                                   >  2:164145/1‑140 (MQ=255)

                                  cGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGa                                                                                             >  1:682807/1‑140 (MQ=255)

                                  cGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGa                                                                                             <  2:121363/140‑1 (MQ=255)

                                  cGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCCGTCCGCTTCATGa                                                                                             <  1:1186932/140‑1 (MQ=255)

                                    ttACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACg                                                                                           <  2:894234/140‑1 (MQ=255)

                                    ttACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACg                                                                                           <  1:164145/140‑1 (MQ=255)

                                    ttACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTCCTGGTTTGCGCGATTTTTGCCAGTAAAAATCCTCGCGCAATCCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACg                                                                                           <  1:934786/140‑1 (MQ=255)

                                    ttACACCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACg                                                                                           <  1:533955/140‑1 (MQ=255)

                                     tACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGc                                                                                          <  1:845852/140‑1 (MQ=255)

                                      aCGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCa                                                                                         >  1:678320/1‑140 (MQ=255)

                                        gccgcATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGc                                                                                       <  2:678320/140‑1 (MQ=255)

                                            cATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCtgat                                                                                   >  2:32392/1‑140 (MQ=255)

                                            cATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCtgat                                                                                   <  1:951341/140‑1 (MQ=255)

                                            cATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCtgat                                                                                   >  1:1055420/1‑140 (MQ=255)

                                            cATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCtgat                                                                                   >  2:1341357/1‑140 (MQ=255)

                                            cATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCtgat                                                                                   <  1:1247843/140‑1 (MQ=255)

                                                  gCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCca                                                                             <  2:83756/140‑1 (MQ=255)

                                                  gCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCca                                                                             <  1:184595/140‑1 (MQ=255)

                                                  gCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCca                                                                             <  1:32392/140‑1 (MQ=255)

                                                  gCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCca                                                                             <  2:194854/140‑1 (MQ=255)

                                                   cATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCcac                                                                            <  2:274287/140‑1 (MQ=255)

                                                        aaTGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCtgat                                                                                   <  1:275905/128‑1 (MQ=255)

                                                        aaTGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCtgat                                                                                   >  2:275905/1‑128 (MQ=255)

                                                           gACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTa                                                                    <  2:1325462/140‑1 (MQ=255)

                                                             cTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTAcc                                                                  <  2:588032/140‑1 (MQ=255)

                                                             cTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTAcc                                                                  <  1:268348/140‑1 (MQ=255)

                                                               cAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCca                                                                <  1:456099/140‑1 (MQ=255)

                                                                aaCGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCcac                                                               >  1:1018316/1‑140 (MQ=255)

                                                                aaCGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCcac                                                               >  1:787771/1‑140 (MQ=255)

                                                                  cGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCcacac                                                             >  1:65053/1‑140 (MQ=255)

                                                                      gTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGTTGATGATCCACATTCTTTACCCACACAAAt                                                         >  2:17084/1‑140 (MQ=255)

                                                                       tCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAAtt                                                        >  2:427220/1‑140 (MQ=255)

                                                                       tCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAAtt                                                        >  1:803453/1‑140 (MQ=255)

                                                                          cGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCAt                                                     <  1:1341357/140‑1 (MQ=255)

                                                                            cTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGt                                                   >  1:605859/1‑140 (MQ=255)

                                                                            cTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGt                                                   <  2:682807/140‑1 (MQ=255)

                                                                            cTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGt                                                   >  2:1072925/1‑140 (MQ=255)

                                                                                   tttGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTtgt                                            <  2:437252/140‑1 (MQ=255)

                                                                                      gcgcGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGcc                                         <  1:959616/140‑1 (MQ=255)

                                                                                      gcgcGATTTTTCCCAGTAAAAATGCTCGCGCAAACTTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGcc                                         <  2:855864/140‑1 (MQ=255)

                                                                                       cgcgATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGcc                                         >  1:1098352/1‑139 (MQ=255)

                                                                                       cgcgATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGcc                                         <  2:1098352/139‑1 (MQ=255)

                                                                                            tttttGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCa                                   >  2:1381675/1‑140 (MQ=255)

                                                                                                tGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCCTCATGACGCAGCTGATGGTCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAg                               <  2:1080938/140‑1 (MQ=255)

                                                                                                  ccAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGtt                             <  2:134460/140‑1 (MQ=255)

                                                                                                  ccAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGtt                             <  1:1072925/140‑1 (MQ=255)

                                                                                                  ccAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGtt                             <  1:1381675/140‑1 (MQ=255)

                                                                                                  ccAGTAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGtt                             <  2:218731/140‑1 (MQ=255)

                                                                                                      tAAAAATGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGCCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTcc                         >  2:558180/1‑140 (MQ=255)

                                                                                                            tGCTCGCGCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGaaaa                   <  2:605859/140‑1 (MQ=255)

                                                                                                                cgcgCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACaga               <  1:68965/140‑1 (MQ=255)

                                                                                                                cgcgCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACaga               >  2:68965/1‑140 (MQ=255)

                                                                                                                cgcgCAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACaga               >  1:1127148/1‑140 (MQ=255)

                                                                                                                 gcgcAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACagag              <  1:43093/140‑1 (MQ=255)

                                                                                                                  cgcAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGc             <  1:558180/140‑1 (MQ=255)

                                                                                                                    cAAACCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGcac           <  2:848114/140‑1 (MQ=255)

                                                                                                                     aaaCCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGcaca          <  1:569486/140‑1 (MQ=255)

                                                                                                                      aaCCTTCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCacac         <  2:1055420/140‑1 (MQ=255)

                                                                                                                          ttCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTta     <  2:748111/140‑1 (MQ=255)

                                                                                                                           tCCGCCGGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTtaa    >  1:876559/1‑140 (MQ=255)

                                                                                                                            ccgccgGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTtaat   <  2:49577/140‑1 (MQ=255)

                                                                                                                             cgccgGCTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTtaata  >  1:1269600/1‑140 (MQ=255)

ATTGAATCTGCATGATATTGCCTGCCGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGACTCTTCCGCCACAGCACGCAATTCATCGCTGTCCGCTTCATGACGCAGCTGATGATCCACATTCTTTACCCACACAAATTCATGTCCTTTGTGCCCTGCCATGAGTTGTCCTGAAAACAGAGCACACGTTAATA  >  NC_000913/1508772‑1509036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A