Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 120 93.5 3664254 88.3% 3235536 136.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,518,562 A→G G95G (GGT→GGC)  mnaT ← L‑amino acid N‑acyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,518,5620AG100.0% 271.6 / NA 73G95G (GGT→GGC) mnaTL‑amino acid N‑acyltransferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (28/45);  total (28/45)

GTGACGACAAATCCCAGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGACCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACT  >  NC_000913/1518431‑1518691
                                                                                                                                   |                                                                                                                                 
gTGACGACAAATCCCAGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTg                                                                                                                             <  1:1352749/138‑1 (MQ=255)
gTGACGACAAATCCCAGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTg                                                                                                                             <  1:21286/138‑1 (MQ=255)
 tGACGACAAATCCCAGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGc                                                                                                                            <  2:339024/138‑1 (MQ=255)
 tGACGACAAATCCCAGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGc                                                                                                                            <  1:1627235/138‑1 (MQ=255)
  gacgacAAATCCCAGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGcc                                                                                                                           <  1:1171553/138‑1 (MQ=255)
  gacgacAAATCCCAGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGcc                                                                                                                           >  2:881380/1‑138 (MQ=255)
   acgacAAATCCCAGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGccc                                                                                                                          <  1:745093/138‑1 (MQ=255)
       cAAATCCCAGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCCTTGCCCtgat                                                                                                                      <  2:430541/138‑1 (MQ=255)
        aaaTCCCAGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCtgatg                                                                                                                     <  2:479512/138‑1 (MQ=255)
        aaaTCCCAGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCtgatg                                                                                                                     <  2:1805948/138‑1 (MQ=255)
         aaTCCCAGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCtgatga                                                                                                                    <  2:1286024/138‑1 (MQ=255)
         aaTCCCAGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCagatga                                                                                                                    <  1:1342452/138‑1 (MQ=255)
           tCCCAGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATc                                                                                                                  >  1:1114506/1‑138 (MQ=255)
             ccAGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCgg                                                                                                                <  1:355227/138‑1 (MQ=255)
             ccAGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCgg                                                                                                                <  1:1308912/138‑1 (MQ=255)
               aGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCtgatg                                                                                                                     >  1:444435/1‑131 (MQ=255)
               aGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCtgatg                                                                                                                     <  2:444435/131‑1 (MQ=255)
                   aCTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGa                                                                                                          <  1:1108507/138‑1 (MQ=255)
                    cTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGAc                                                                                                         <  2:1200389/138‑1 (MQ=255)
                      ggtggAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACAt                                                                                                       >  2:915436/1‑138 (MQ=255)
                       gtggAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATa                                                                                                      >  2:1661944/1‑138 (MQ=255)
                         ggAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATaaa                                                                                                    <  1:253866/138‑1 (MQ=255)
                            gaTGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCg                                                                                                 <  2:1536255/138‑1 (MQ=255)
                            gaTGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCg                                                                                                 <  1:1393955/138‑1 (MQ=255)
                            gaTGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCg                                                                                                 <  1:881380/138‑1 (MQ=255)
                            gaTGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCg                                                                                                 <  1:1015776/138‑1 (MQ=255)
                                   cGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTc                                                                                          >  1:107237/1‑138 (MQ=255)
                                   cGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTc                                                                                          <  1:1269731/138‑1 (MQ=255)
                                    gAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTcc                                                                                         >  2:632342/1‑138 (MQ=255)
                                       gCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCg                                                                                                 >  2:751838/1‑127 (MQ=255)
                                       gCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCg                                                                                                 <  1:751838/127‑1 (MQ=255)
                                       gCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACg                                                                                      <  2:216296/138‑1 (MQ=255)
                                         cTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTc                                                                                          >  1:656540/1‑132 (MQ=255)
                                         cTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTc                                                                                          <  2:656540/132‑1 (MQ=255)
                                          tGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTa                                                                                   >  2:1375217/1‑138 (MQ=255)
                                                     ttCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAAcc                                                                        <  1:193762/138‑1 (MQ=255)
                                                             cGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAAc                                                                <  2:1114506/138‑1 (MQ=255)
                                                                 gACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACg                                                            >  2:1678661/1‑138 (MQ=255)
                                                                     aTGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAg                                                        >  2:743768/1‑138 (MQ=255)
                                                                     aTGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAg                                                        <  1:1626992/138‑1 (MQ=255)
                                                                           tGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCa                                                  <  1:743768/138‑1 (MQ=255)
                                                                            gCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCaa                                                 <  1:1395140/138‑1 (MQ=255)
                                                                            gCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCaa                                                 <  2:383778/138‑1 (MQ=255)
                                                                               tCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACg                                              >  2:453104/1‑138 (MQ=255)
                                                                                cccGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGa                                             >  1:340104/1‑138 (MQ=255)
                                                                                cccGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGa                                             >  2:407453/1‑138 (MQ=255)
                                                                                  cGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACg                                              <  1:214486/135‑1 (MQ=255)
                                                                                  cGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACg                                              >  2:214486/1‑135 (MQ=255)
                                                                                  cGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAgg                                           <  1:915436/138‑1 (MQ=255)
                                                                                  cGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAgg                                           <  1:1375217/138‑1 (MQ=255)
                                                                                   gCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGc                                          <  2:573206/138‑1 (MQ=255)
                                                                                              cTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCa                               >  1:833158/1‑138 (MQ=255)
                                                                                                             ggCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCt                <  1:1661944/138‑1 (MQ=255)
                                                                                                             ggCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCt                >  1:6390/1‑138 (MQ=255)
                                                                                                             ggCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCt                >  2:1147644/1‑138 (MQ=255)
                                                                                                             ggCTTAACAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCt                >  2:513260/1‑138 (MQ=255)
                                                                                                                  aaCAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTc           <  1:407453/138‑1 (MQ=255)
                                                                                                                   aCAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCa          >  2:58616/1‑138 (MQ=255)
                                                                                                                   aCAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCa          >  2:1105347/1‑138 (MQ=255)
                                                                                                                    cAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTc           <  1:131933/136‑1 (MQ=255)
                                                                                                                    cAATTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTc           >  2:131933/1‑136 (MQ=255)
                                                                                                                     aaTTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCAcc        <  2:1560905/138‑1 (MQ=255)
                                                                                                                      aTTTACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCa       <  2:833158/138‑1 (MQ=255)
                                                                                                                       tttACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAg      <  2:457092/138‑1 (MQ=255)
                                                                                                                       tttACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAg      <  2:146135/138‑1 (MQ=255)
                                                                                                                         tACGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCa    >  1:218329/1‑138 (MQ=255)
                                                                                                                           cGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTc           >  2:1450457/1‑129 (MQ=255)
                                                                                                                           cGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTc           <  1:701606/129‑1 (MQ=255)
                                                                                                                           cGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTc           >  2:701606/1‑129 (MQ=255)
                                                                                                                           cGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTc           <  1:1450457/129‑1 (MQ=255)
                                                                                                                           cGCCCCAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACt  >  2:497381/1‑138 (MQ=255)
                                                                                                                               ccAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCt                >  2:1652033/1‑120 (MQ=255)
                                                                                                                               ccAGGCCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCt                <  1:1652033/120‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                 
GTGACGACAAATCCCAGCGACTGGTGGAGATGCAGCGAGGCCTGATTTTGCGATTCGATCCCGGCGACCATGACATGCTTCCCGCAATCCCGCGCTTCATCAATCAATCGGCTTAACAATTTACGCCCCAGACCTTTGCCCTGATGATCGGGATGGACATAAACCGAATGTTCCACGGTATGGCGAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACT  >  NC_000913/1518431‑1518691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A