Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 120 93.5 3664254 88.3% 3235536 136.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,518,750 T→C T33A (ACG→GCG)  mnaT ← L‑amino acid N‑acyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,518,7500TC98.6% 261.8 / ‑4.8 73T33A (ACG→GCG) mnaTL‑amino acid N‑acyltransferase
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (30/42);  total (31/42)
Fisher's exact test for biased strand distribution p-value = 4.25e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

GAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGTTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCAATAAAATAATGATGATGATGTTATCAA  >  NC_000913/1518615‑1518884
                                                                                                                                       |                                                                                                                                      
gAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGctt                                                                                                                                      <  1:302598/138‑1 (MQ=255)
 aaaaCCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTg                                                                                                                                     <  2:1014155/138‑1 (MQ=255)
      cATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCTGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCAt                                                                                                                                >  2:1807254/1‑138 (MQ=255)
      cATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCAt                                                                                                                                >  2:149037/1‑138 (MQ=255)
             aCTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGAt                                                                                                                         <  2:934200/138‑1 (MQ=255)
             aCTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGAt                                                                                                                         <  1:1678661/138‑1 (MQ=255)
             aCTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGAt                                                                                                                         <  1:1660337/138‑1 (MQ=255)
                aCGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAgc                                                                                                                      <  1:1056236/138‑1 (MQ=255)
                aCGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAgc                                                                                                                      <  2:1133209/138‑1 (MQ=255)
                aCGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAgc                                                                                                                      <  1:632342/138‑1 (MQ=255)
                 cGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGAt                                                                                                                         >  1:1005633/1‑134 (MQ=255)
                 cGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGAt                                                                                                                         <  2:1005633/134‑1 (MQ=255)
                 cGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAgcc                                                                                                                     <  1:41531/138‑1 (MQ=255)
                  gCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAgccg                                                                                                                    <  2:218329/138‑1 (MQ=255)
                  gCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCACTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAgccg                                                                                                                    >  2:568729/1‑138 (MQ=255)
                     aGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGccgccg                                                                                                                 <  1:149037/138‑1 (MQ=255)
                      gTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGt                                                                                                                <  2:436291/138‑1 (MQ=255)
                           cAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAgccgcc                                                                                                                  <  1:1513450/131‑1 (MQ=255)
                           cAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAgccgcc                                                                                                                  >  2:1513450/1‑131 (MQ=255)
                                gAGGCATATCCCGTCACTACGCCGTTTTCCTCACTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACg                                                                                                      <  1:568729/138‑1 (MQ=255)
                                  ggCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGc                                                                                                    >  2:1217261/1‑138 (MQ=255)
                                  ggCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGc                                                                                                    >  2:1726648/1‑138 (MQ=255)
                                          ccGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTtat                                                                                            >  1:287140/1‑138 (MQ=255)
                                               aCTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACgg                                                                                                     >  2:286893/1‑124 (MQ=255)
                                               aCTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACgg                                                                                                     <  1:286893/124‑1 (MQ=255)
                                                cTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAACATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAAttt                                                                                      >  2:1184623/1‑138 (MQ=255)
                                                  aCGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTcc                                                                                    <  1:1454624/138‑1 (MQ=255)
                                                  aCGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTcc                                                                                    <  2:6390/138‑1 (MQ=255)
                                                    gCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGc                                                                                  >  1:880668/1‑138 (MQ=255)
                                                     ccGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCa                                                                                 <  2:1805182/138‑1 (MQ=255)
                                                     ccGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCa                                                                                 <  1:1726648/138‑1 (MQ=255)
                                                     ccGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCa                                                                                 <  1:1217261/138‑1 (MQ=255)
                                                          ttCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGTTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGgc                                                                            >  1:904069/1‑138 (MQ=255)
                                                                              gATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCggg                                                        >  2:1705475/1‑138 (MQ=255)
                                                                                     tGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACg                                                 >  1:1101377/1‑138 (MQ=255)
                                                                                       cTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGa                                               <  2:608371/138‑1 (MQ=255)
                                                                                        tAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCa                                                      >  1:1635930/1‑130 (MQ=255)
                                                                                        tAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAAc                                                  <  1:649241/134‑1 (MQ=255)
                                                                                        tAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAAc                                                  >  2:649241/1‑134 (MQ=255)
                                                                                        tAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGAt                                              >  1:873842/1‑138 (MQ=255)
                                                                                        tAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCATATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCa                                                      <  2:1635930/130‑1 (MQ=255)
                                                                                         aaaGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATg                                             <  2:873842/138‑1 (MQ=255)
                                                                                         aaaGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATg                                             <  1:388746/138‑1 (MQ=255)
                                                                                          aaGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATgg                                            >  2:1210472/1‑138 (MQ=255)
                                                                                          aaGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATgg                                            >  2:297124/1‑138 (MQ=255)
                                                                                          aaGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATgg                                            >  2:1515489/1‑138 (MQ=255)
                                                                                          aaGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATgg                                            >  1:682574/1‑138 (MQ=255)
                                                                                          aaGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATgg                                            >  2:796226/1‑138 (MQ=255)
                                                                                                 cgcTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAAc                                                  >  1:1615963/1‑125 (MQ=255)
                                                                                                 cgcTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAAc                                                  <  2:1615963/125‑1 (MQ=255)
                                                                                                 cgcTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTc                                     >  1:298374/1‑138 (MQ=255)
                                                                                                   cTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTg                                   >  2:397423/1‑138 (MQ=255)
                                                                                                   cTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTg                                   <  2:298374/138‑1 (MQ=255)
                                                                                                   cTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTg                                   <  2:287140/138‑1 (MQ=255)
                                                                                                   cTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTCTGCGGGCAAAACGGATGGACATGTCTg                                   >  2:1646930/1‑138 (MQ=255)
                                                                                                     tCAAACCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGc                                 <  2:1735129/138‑1 (MQ=255)
                                                                                                        aaCCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTc                              <  1:1515489/138‑1 (MQ=255)
                                                                                                        aaCCAGGCAATGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTc                              <  1:1210472/138‑1 (MQ=255)
                                                                                                                aaTGCGGTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCaataaaat                      <  1:513260/138‑1 (MQ=255)
                                                                                                                     ggTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCAATAAAATAatga                 <  1:796226/138‑1 (MQ=255)
                                                                                                                     ggTTATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCAATAAAATAatga                 >  1:37751/1‑138 (MQ=255)
                                                                                                                        tATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCAATAAAATAatgatga              <  2:1101377/138‑1 (MQ=255)
                                                                                                                        tATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCAATAAAATAatgatga              <  1:297124/138‑1 (MQ=255)
                                                                                                                        tATCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCAATAAAATAatgatga              <  1:1705475/138‑1 (MQ=255)
                                                                                                                          tCAGCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCAATAAAATAatgatgatg            <  2:37751/138‑1 (MQ=255)
                                                                                                                             gCATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCAATAAAATAatgatgatgatg         <  2:880668/138‑1 (MQ=255)
                                                                                                                             acATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCAATAAAATAatgatgatgatg         <  1:1184623/137‑1 (MQ=255)
                                                                                                                              cATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCAATAAAATAATGATGATGATGt        >  1:914927/1‑138 (MQ=255)
                                                                                                                              cATCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCAATAAAATAATGATGATGATGt        >  1:1517519/1‑138 (MQ=255)
                                                                                                                               aTCCACCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCAATAAAATAATGATGATGATGtt       <  2:682574/138‑1 (MQ=255)
                                                                                                                                tCCACCGCTTGGTCATTCCAGATAGCCGCCGGATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCCCAGTCGGCTTTTCGGGGAAAACGGATGGACATGTCTTGCCTCAATAAAATAATGATGATTGTGTTa      >  2:570070/1‑138 (MQ=255)
                                                                                                                                   aCCGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCAATAAAATAATGATGATGATGTTATCa   >  2:291300/1‑138 (MQ=255)
                                                                                                                                    ccGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCAATAAAATAATGATGATGATGTTATCaa  <  1:497381/138‑1 (MQ=255)
                                                                                                                                    ccGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCAATAAAATAATGATGATGATGTTATCaa  <  2:914927/138‑1 (MQ=255)
                                                                                                                                    ccGCTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCAATAAAATAATGATGATGATGTTATCaa  <  2:1517519/138‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                      
GAAAACCATCGAAACTACGCCAGTCGCCAAACGAGGCATATCCCGTCACTACGCCGTTTTCCTCGCTCACCAGCACTGGATAACCTGCTAAAGTCCGCGCTTCAAACCAGGCAATGCGGTTATCAGCATCCACCGTTTGGTCATTCCAGATAGCCGCCGTATACAACACGGCGTGGTTATAAATTTCCGCAATGGCAGCACAGTCGGCTTTGCGGGCAAAACGGATGGACATGTCTGGCCTCAATAAAATAATGATGATGATGTTATCAA  >  NC_000913/1518615‑1518884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A