Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,521,448 T→C K540E (AAA→GAA)  yncD ← putative TonB‑dependent outer membrane receptor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,521,4480TC100.0% 378.1 / NA 101K540E (AAA→GAA) yncDputative TonB‑dependent outer membrane receptor
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (38/63);  total (38/63)

Only 100 of 101 total aligned reads displayed.

TGTTCATTGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTTGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCGATCTCAATTGTATCGTTGGTGGAT  >  NC_000913/1521318‑1521581
                                                                                                                                  |                                                                                                                                     
tGTTCATTGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGt                                                                                                                              <  2:1084544/140‑1 (MQ=255)
 gTTCATTGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTa                                                                                                                             <  2:101177/140‑1 (MQ=255)
 gTTCATTGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTa                                                                                                                             <  2:315018/140‑1 (MQ=255)
  ttCATTGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTAc                                                                                                                            >  1:687069/1‑140 (MQ=255)
  ttCATTGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTAc                                                                                                                            >  2:748750/1‑140 (MQ=255)
  ttCATTGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTAc                                                                                                                            >  2:685720/1‑140 (MQ=255)
  ttCATTGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTAc                                                                                                                            >  1:1334662/1‑140 (MQ=255)
  ttCATTGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTAc                                                                                                                            >  1:445495/1‑140 (MQ=255)
   tCATTGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGACATTTTCGTAAGTCGTACg                                                                                                                           <  2:629491/140‑1 (MQ=255)
     aTTGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCGGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGcc                                                                                                                         <  2:781085/140‑1 (MQ=255)
     aTTGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGcc                                                                                                                         <  1:1079800/140‑1 (MQ=255)
     aTTGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGcc                                                                                                                         <  1:1042014/140‑1 (MQ=255)
     aTTGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGcc                                                                                                                         >  1:417840/1‑140 (MQ=255)
     aTTGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGcc                                                                                                                         <  1:748750/140‑1 (MQ=255)
       tGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCa                                                                                                                       >  1:81885/1‑140 (MQ=255)
       tGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCa                                                                                                                       >  1:1692626/1‑140 (MQ=255)
        gCAAGCATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCAc                                                                                                                      <  2:1025550/140‑1 (MQ=255)
           aaCATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGc                                                                                                                   <  1:1425376/140‑1 (MQ=255)
            aCATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCt                                                                                                                  >  1:1425891/1‑140 (MQ=255)
               ttGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACt                                                                                                               >  2:1383723/1‑140 (MQ=255)
                tgctgcGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTg                                                                                                              <  2:119493/140‑1 (MQ=255)
                tgctgcGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTg                                                                                                              <  2:1283179/140‑1 (MQ=255)
                 gctgcGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCTGCATTTTCGTAAGTCGTACGCCCACCGCTACTGc                                                                                                             >  2:586601/1‑140 (MQ=255)
                  ctgcGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCt                                                                                                            <  2:81885/140‑1 (MQ=255)
                   tgcGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTa                                                                                                           <  2:1095765/140‑1 (MQ=255)
                   tgcGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTa                                                                                                           <  1:1640800/140‑1 (MQ=255)
                    gcGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTAt                                                                                                          <  2:1619495/140‑1 (MQ=255)
                          ggTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGacaa                                                                                                    >  1:738925/1‑140 (MQ=255)
                           gTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGacaac                                                                                                   >  1:641064/1‑140 (MQ=255)
                             cGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGAcaacaa                                                                                                 >  2:231656/1‑140 (MQ=255)
                                 tCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTtc                                                                                             <  1:409718/140‑1 (MQ=255)
                                 tCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTtc                                                                                             <  1:488718/140‑1 (MQ=255)
                                    aGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTtcatc                                                                                          >  1:946396/1‑140 (MQ=255)
                                      ccAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTtcatcat                                                                                        <  1:1111182/140‑1 (MQ=255)
                                          gTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAgt                                                                                    >  1:320825/1‑140 (MQ=255)
                                           tCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAgtg                                                                                   <  1:1383723/140‑1 (MQ=255)
                                            ccAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAgtgt                                                                                  <  2:1016173/140‑1 (MQ=255)
                                              aGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCg                                                                                <  1:807598/140‑1 (MQ=255)
                                               ggACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCTGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAgtgt                                                                                  >  2:306229/1‑137 (MQ=255)
                                               ggACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCTGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAgtgt                                                                                  <  1:306229/137‑1 (MQ=255)
                                               ggACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCgg                                                                               >  1:766602/1‑140 (MQ=255)
                                                gACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGt                                                                              >  2:604391/1‑140 (MQ=255)
                                                gACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTAATCATCAGTGTCGGt                                                                              <  1:1374236/140‑1 (MQ=255)
                                                    cgTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGa                                                                          >  2:1494346/1‑140 (MQ=255)
                                                    cgTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGa                                                                          >  2:589882/1‑140 (MQ=255)
                                                    cgTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGa                                                                          >  2:1299930/1‑140 (MQ=255)
                                                    cgTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGa                                                                          >  1:1704679/1‑140 (MQ=255)
                                                     gTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGaa                                                                         >  1:602197/1‑140 (MQ=255)
                                                     gTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGaa                                                                         >  1:828449/1‑140 (MQ=255)
                                                      tttACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGaaa                                                                        <  2:1024848/140‑1 (MQ=255)
                                                      tttACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGaaa                                                                        <  2:738925/140‑1 (MQ=255)
                                                      tttACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGaaa                                                                        <  2:1456578/140‑1 (MQ=255)
                                                           gcgAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATg                                                                   <  1:218079/140‑1 (MQ=255)
                                                           gcgAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATg                                                                   <  2:180051/140‑1 (MQ=255)
                                                           gcgAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATg                                                                   <  1:916242/140‑1 (MQ=255)
                                                              aaaaTCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCga                                                                <  2:1589626/140‑1 (MQ=255)
                                                               aaaTCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCgag                                                               <  1:589882/140‑1 (MQ=255)
                                                                      cTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAagc                                                        <  1:1451444/140‑1 (MQ=255)
                                                                      cTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAagc                                                        <  1:1652435/140‑1 (MQ=255)
                                                                      cTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAagc                                                        <  2:563816/140‑1 (MQ=255)
                                                                      cTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAagc                                                        <  1:1140008/140‑1 (MQ=255)
                                                                        gCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAagcag                                                      <  1:957015/140‑1 (MQ=255)
                                                                        gCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAagcag                                                      <  2:191447/140‑1 (MQ=255)
                                                                        gCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAagcag                                                      <  1:986758/140‑1 (MQ=255)
                                                                        gCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAagcag                                                      <  2:76117/140‑1 (MQ=255)
                                                                          gAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGcc                                                    <  2:1341016/140‑1 (MQ=255)
                                                                           aaaCGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAag                                                         <  1:636099/134‑1 (MQ=255)
                                                                           aaaCGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAag                                                         >  2:636099/1‑134 (MQ=255)
                                                                             aCGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCAt                                                 <  2:137050/140‑1 (MQ=255)
                                                                             aCGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCAt                                                 <  2:347382/140‑1 (MQ=255)
                                                                                    tCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAAt                                          <  1:1488268/140‑1 (MQ=255)
                                                                                       cATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATAcg                                       <  2:602197/140‑1 (MQ=255)
                                                                                        aTGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATAcgc                                      >  1:2376/1‑140 (MQ=255)
                                                                                        aTGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATAcgc                                      <  1:590885/140‑1 (MQ=255)
                                                                                          gCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGt                                    >  1:1518974/1‑140 (MQ=255)
                                                                                            cAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGttt                                  <  2:1425891/140‑1 (MQ=255)
                                                                                               ttCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTAc                               >  2:1409407/1‑140 (MQ=255)
                                                                                               ttCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTAc                               >  1:132134/1‑140 (MQ=255)
                                                                                               ttCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTACTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTAc                               >  2:54758/1‑140 (MQ=255)
                                                                                                   gcgcCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGcc                           <  2:1704679/140‑1 (MQ=255)
                                                                                                    cgcCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGcc                           <  2:1544043/139‑1 (MQ=255)
                                                                                                    cgcCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGcc                           >  1:1544043/1‑139 (MQ=255)
                                                                                                    cgcCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCg                          >  2:370708/1‑140 (MQ=255)
                                                                                                    cgcCTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCg                          >  1:1319079/1‑140 (MQ=255)
                                                                                                      ccTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCGAt                        <  2:402210/140‑1 (MQ=255)
                                                                                                      ccTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCGAt                        <  2:898716/140‑1 (MQ=255)
                                                                                                      ccTTGACGACGGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCGAt                        <  2:529300/140‑1 (MQ=255)
                                                                                                            cgacgGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCGATCTCAAt                  <  2:865814/140‑1 (MQ=255)
                                                                                                            cgacgGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTACTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCGATCTCAAt                  <  1:54758/140‑1 (MQ=255)
                                                                                                             gacgGGTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCGATCTCAAtt                 >  1:1569115/1‑140 (MQ=255)
                                                                                                                gggTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCGATCTCAATTGTa              <  1:370708/140‑1 (MQ=255)
                                                                                                                gggTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCGATCTCAATTGTa              <  2:828449/140‑1 (MQ=255)
                                                                                                                  gTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCGATCTCAATTGTATc            <  2:766602/140‑1 (MQ=255)
                                                                                                                  gTCTTTCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCGATCTCAATTGTATc            >  2:862167/1‑140 (MQ=255)
                                                                                                                     tttCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGcc                           <  2:1320857/122‑1 (MQ=255)
                                                                                                                     tttCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGcc                           >  1:1320857/1‑122 (MQ=255)
                                                                                                                     tttCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCGATCTCAATTGTATCGtt         >  1:1558606/1‑140 (MQ=255)
                                                                                                                      ttCCGGCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCGATCTCAATTGTATCGTtg        <  2:1334662/140‑1 (MQ=255)
                                                                                                                           gCATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCGATCTCAATTGTATCGTTGGTGGa   <  1:1299930/140‑1 (MQ=255)
                                                                                                                            cATTTTCGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCGATCTCAATTGTATCGTTGGTGGAt  <  2:132134/140‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                     
TGTTCATTGCAAACATTGCTGCGATAGGTCGCATCAAGCCAGGTCCAGGACGCGTTTACGCGAAAATCTCCTGCGAAACGTTGATCCCATGCCAGTTCAGCGCCTTGACGACGGGTCTTTCCGGCATTTTTGTAAGTCGTACGCCCACCGCTACTGCTATCGACAACAATTTCATCATCAGTGTCGGTCTGAAACAATGCGAGACTAAGCAGCCCATCACCAATACGCGTTTTACTGCCGATCTCAATTGTATCGTTGGTGGAT  >  NC_000913/1521318‑1521581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A