Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 120 93.5 3664254 88.3% 3235536 136.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,767,595 C→T R364Q (CGG→CAG)  ydiJ ← putative FAD‑linked oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,767,5950CT100.0% 302.3 / NA 84R364Q (CGG→CAG) ydiJputative FAD‑linked oxidoreductase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (46/38);  total (46/38)

CAGACCAACGGCTTTTTTGCGCATTGCATAGATACGTTCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGC  >  NC_000913/1767462‑1767726
                                                                                                                                     |                                                                                                                                   
cAGACCAACGGCTTTTTTGCGCATTGCATAGATACGTTCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCtc                                                                                                                                 <  2:730471/138‑1 (MQ=255)
     cAACGGCTTTTTTGCGCATTGCATAGATACGTTCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCatcaa                                                                                                                            <  1:388965/138‑1 (MQ=255)
       aCGGCTTTTTTGCGCATTGCATAGATACGTTCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACTGCGCACAGAGTGCATTTACCTGCTCatcaatc                                                                                                                          <  2:1624151/138‑1 (MQ=255)
       aCGGCTTTTTTGCGCATTGCATAGATACGTTCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCatcaatc                                                                                                                          >  2:1311470/1‑138 (MQ=255)
       aCGGCTTTTTTGCGCATTGCATAGATACGTTCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCatcaatc                                                                                                                          >  2:1257176/1‑138 (MQ=255)
       aCGGCTTTTTTGCGCATTGCATAGATACGTTCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCatcaatc                                                                                                                          >  1:926259/1‑138 (MQ=255)
         ggCTTTTTTGCGCATTGCATAGATACGTTCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAg                                                                                                                        <  2:639997/138‑1 (MQ=255)
           cTTTTTTGCGCATTGCATAGATACGTTCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAgcg                                                                                                                      >  2:1136522/1‑138 (MQ=255)
             tttttGCGCATTGCATAGATCCGTTCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGcc                                                                                                                    <  2:20091/138‑1 (MQ=255)
               tttGCGCATTGCATAGATACGTTCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCtc                                                                                                                  >  2:1638928/1‑138 (MQ=255)
                  gcgcATTGCATAGATACGTTCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCtcatc                                                                                                               <  1:1092969/138‑1 (MQ=255)
                         gCATAGATACGTTCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCa                                                                                                        <  1:1407699/138‑1 (MQ=255)
                              gATACGTTCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCaaa                                                                                                   <  1:716819/138‑1 (MQ=255)
                                  cGTTCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTcc                                                                                               <  2:769295/138‑1 (MQ=255)
                                  cGTTCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTcc                                                                                               <  1:839227/138‑1 (MQ=255)
                                    ttCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCcac                                                                                             >  2:844431/1‑138 (MQ=255)
                                    ttCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCcac                                                                                             >  1:986694/1‑138 (MQ=255)
                                    ttCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCcac                                                                                             >  2:803168/1‑138 (MQ=255)
                                    ttCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCcac                                                                                             >  1:538590/1‑138 (MQ=255)
                                    ttCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCcac                                                                                             >  1:1335417/1‑138 (MQ=255)
                                      cAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCaaa                                                                                                   <  2:1169379/130‑1 (MQ=255)
                                      cAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCaaa                                                                                                   >  2:253613/1‑130 (MQ=255)
                                      cAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCaaa                                                                                                   >  1:1169379/1‑130 (MQ=255)
                                      cAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCaaa                                                                                                   <  1:253613/130‑1 (MQ=255)
                                      cAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTcc                                                                                               <  2:1350434/134‑1 (MQ=255)
                                      cAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTcc                                                                                               >  1:1350434/1‑134 (MQ=255)
                                      cAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCAGaa                                                                                           >  2:1124701/1‑138 (MQ=255)
                                      cAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACaa                                                                                           >  1:1023084/1‑138 (MQ=255)
                                      cAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACaa                                                                                           >  2:500291/1‑138 (MQ=255)
                                      cAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACaa                                                                                           >  1:664088/1‑138 (MQ=255)
                                      cAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACaa                                                                                           >  1:134622/1‑138 (MQ=255)
                                      cAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACaa                                                                                           >  2:236474/1‑138 (MQ=255)
                                      cAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACaa                                                                                           >  2:662859/1‑138 (MQ=255)
                                         cccccGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGt                                                                                        <  2:1481404/138‑1 (MQ=255)
                                         cccccGACGGCTCACGGCTCTCCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTGCCTGCTCATGAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGt                                                                                        <  2:1303552/138‑1 (MQ=255)
                                           cccGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTc                                                                                      >  2:1707838/1‑138 (MQ=255)
                                           cccGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTc                                                                                      >  2:1236074/1‑138 (MQ=255)
                                           cccGCCAGCTAACAGGAAACCGGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTc                                                                                      >  2:1206512/1‑138 (MQ=255)
                                            ccGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCa                                                                                     <  2:538590/138‑1 (MQ=255)
                                              gCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGc                                                                                   >  2:1570143/1‑138 (MQ=255)
                                               ccAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGcc                                                                                  >  1:1743914/1‑138 (MQ=255)
                                                cAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCa                                                                                                     >  1:151004/1‑118 (MQ=255)
                                                cAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCa                                                                                                     <  2:151004/118‑1 (MQ=255)
                                                cAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGccc                                                                                 <  2:926259/138‑1 (MQ=255)
                                                cAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGccc                                                                                 <  2:1335417/138‑1 (MQ=255)
                                                cAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGccc                                                                                 >  1:1417675/1‑138 (MQ=255)
                                                 aGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCg                                                                                <  1:1707838/138‑1 (MQ=255)
                                                  gCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGa                                                                               <  1:1124701/138‑1 (MQ=255)
                                                  gCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGa                                                                               <  1:803168/138‑1 (MQ=255)
                                                  gCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGa                                                                               <  1:719437/138‑1 (MQ=255)
                                                         gCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCAtctc                                                                        >  2:1555744/1‑138 (MQ=255)
                                                            cacCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTg                                                                     <  2:816213/138‑1 (MQ=255)
                                                               cTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTc                                                                  >  1:1613276/1‑138 (MQ=255)
                                                                tGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCa                                                                 <  2:1417675/138‑1 (MQ=255)
                                                                 gCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAg                                                                >  2:1750553/1‑138 (MQ=255)
                                                                    aGCCGATGACGCCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCACGca                                                             >  2:59795/1‑138 (MQ=255)
                                                                       cGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACAt                                                          <  1:856061/138‑1 (MQ=255)
                                                                        gATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATc                                                         >  2:326298/1‑138 (MQ=255)
                                                                           gACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGt                                                      >  2:809639/1‑138 (MQ=255)
                                                                                         gaCTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGa                                        <  2:829873/138‑1 (MQ=255)
                                                                                              gCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGaa                                   <  1:1257176/138‑1 (MQ=255)
                                                                                              gCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGaa                                   <  2:1023084/138‑1 (MQ=255)
                                                                                               cGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAAt                                  >  2:1654351/1‑138 (MQ=255)
                                                                                                gATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAAt                                  <  2:1584687/137‑1 (MQ=255)
                                                                                                gATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAAt                                  >  1:1584687/1‑137 (MQ=255)
                                                                                                gATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATg                                 <  2:1032127/138‑1 (MQ=255)
                                                                                                   cAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCa                              >  2:1583353/1‑138 (MQ=255)
                                                                                                   cAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCa                              <  1:1311470/138‑1 (MQ=255)
                                                                                                   cAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCa                              <  2:1743914/138‑1 (MQ=255)
                                                                                                   cAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCA‑AATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGa                                        <  1:505849/127‑1 (MQ=255)
                                                                                                   cAGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCA‑AATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGa                                        >  2:505849/1‑127 (MQ=255)
                                                                                                    aGCTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAg                             <  1:1620894/138‑1 (MQ=255)
                                                                                                      cTCATCCAACCGCGCACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGAc                           >  2:1141800/1‑138 (MQ=255)
                                                                                                                 gcgcACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGcc                               <  2:978327/123‑1 (MQ=255)
                                                                                                                 gcgcACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGcc                               >  1:978327/1‑123 (MQ=255)
                                                                                                                   gcACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCcgc              >  2:420109/1‑138 (MQ=255)
                                                                                                                   gcACAGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCcgc              >  1:1493665/1‑138 (MQ=255)
                                                                                                                    cacaGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCcgcg             <  1:1638928/138‑1 (MQ=255)
                                                                                                                      caGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGcc           >  2:630930/1‑138 (MQ=255)
                                                                                                                      caGAGTGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGcc           >  1:1065875/1‑138 (MQ=255)
                                                                                                                           tGCATTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGAtt      >  2:791744/1‑138 (MQ=255)
                                                                                                                              aTTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTc     <  2:1815398/136‑1 (MQ=255)
                                                                                                                              aTTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTc     >  1:1815398/1‑136 (MQ=255)
                                                                                                                              aTTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAg   >  2:1319601/1‑138 (MQ=255)
                                                                                                                              aTTTACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAg   <  1:1750553/138‑1 (MQ=255)
                                                                                                                               tttACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGc  >  2:329397/1‑138 (MQ=255)
                                                                                                                               tttACCTGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGc  >  1:1090948/1‑138 (MQ=255)
                                                                                                                                     |                                                                                                                                   
CAGACCAACGGCTTTTTTGCGCATTGCATAGATACGTTCAACCCCCGCCAGCTCACGGCACACCTGCCAGCCGATGACACCTGCTTGATGACTGGCGATCAGCTCATCCAACCGCGCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGC  >  NC_000913/1767462‑1767726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A