Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	120	93.5	3664254	88.3%	3235536	136.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,767,977	G→A	R237C (CGC→TGC)	ydiJ ←	putative FAD‑linked oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,767,977	0	G	A	100.0%	294.5 / NA	82	R237C (CGC→TGC)	ydiJ	putative FAD‑linked oxidoreductase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (45/37); total (45/37)

GCGTGTAATATCCAGCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCGGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCAGCGTTTCCGCCAATTCGACGGGTAAAGGTT  >  NC_000913/1767846‑1768108

gCGTGTAATATCCAGCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAg                                                                                                                               <  2:102096/138‑1 (MQ=255)

  gtgtAATATCCAGCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGtt                                                                                                                             >  1:566589/1‑138 (MQ=255)

   tgtAATATCCAGCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGttt                                                                                                                            >  2:1711770/1‑138 (MQ=255)

   tgtAATATCCAGCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGttt                                                                                                                            >  1:940472/1‑138 (MQ=255)

   tgtAATATCCAGCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGttt                                                                                                                            >  1:564215/1‑138 (MQ=255)

   tgtAATATCCAGCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGttt                                                                                                                            >  1:368581/1‑138 (MQ=255)

     tAATATCCAGCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTgg                                                                                                                          <  1:283268/138‑1 (MQ=255)

        tatCCAGCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGa                                                                                                                       <  2:955519/138‑1 (MQ=255)

            cAGCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGtt                                                                                                                   >  1:1448315/1‑138 (MQ=255)

            cAGCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGtt                                                                                                                   <  2:1448315/138‑1 (MQ=255)

            cAGCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGtt                                                                                                                   <  1:131318/138‑1 (MQ=255)

            cAGCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGAGAAGtt                                                                                                                   >  2:1648894/1‑138 (MQ=255)

             aGCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACT‑GGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGa                                                                                                                       >  2:341834/1‑132 (MQ=255)

             aGCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACT‑GGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGa                                                                                                                       <  1:341834/132‑1 (MQ=255)

              gCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGtt                                                                                                                   <  1:1715634/136‑1 (MQ=255)

              gCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGtt                                                                                                                   >  2:1715634/1‑136 (MQ=255)

              gCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTGGt                                                                                                                 >  2:1126573/1‑138 (MQ=255)

               ccGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGa                                                                                                                       >  2:766967/1‑131 (MQ=255)

               ccGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGa                                                                                                                       <  1:766967/131‑1 (MQ=255)

               ccGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTc                                                                                                                >  2:1731779/1‑138 (MQ=255)

                 gcgcTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGa                                                                                                              >  1:1315391/1‑138 (MQ=255)

                 gcgcTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGa                                                                                                              >  1:1159480/1‑138 (MQ=255)

                    cTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGCACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATaa                                                                                                           >  1:1037385/1‑138 (MQ=255)

                    cTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATaa                                                                                                           >  1:1389952/1‑138 (MQ=255)

                    cTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATaa                                                                                                           >  2:1162692/1‑138 (MQ=255)

                      tCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAAtt                                                                                                         >  1:386337/1‑138 (MQ=255)

                      tCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAAtt                                                                                                         >  2:1547391/1‑138 (MQ=255)

                       cGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTa                                                                                                        <  2:1159480/138‑1 (MQ=255)

                                   ccAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCt                                                                                            >  2:1037674/1‑138 (MQ=255)

                                      gggTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGAc                                                                                         <  1:164570/136‑1 (MQ=255)

                                      gCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGAc                                                                                         >  2:401968/1‑138 (MQ=255)

                                      gCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGAc                                                                                         >  1:935557/1‑138 (MQ=255)

                                         tCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTgg                                                                                                   <  1:1717705/125‑1 (MQ=255)

                                         tCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTgg                                                                                                   >  2:1717705/1‑125 (MQ=255)

                                         tCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGc                                                                                      <  1:1162692/138‑1 (MQ=255)

                                         tCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGc                                                                                      <  2:1577991/138‑1 (MQ=255)

                                         tCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGc                                                                                      <  2:332811/138‑1 (MQ=255)

                                           ccTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGGTGACGGCaa                                                                                    <  2:1104607/138‑1 (MQ=255)

                                                    cccGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATaa                                                                           <  2:566589/138‑1 (MQ=255)

                                                    cccGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATaa                                                                           <  1:1731779/138‑1 (MQ=255)

                                                    cccGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATaa                                                                           <  2:250058/138‑1 (MQ=255)

                                                      cGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCaa                                                                                    >  2:1325376/1‑127 (MQ=255)

                                                      cGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCaa                                                                                    <  1:1325376/127‑1 (MQ=255)

                                                      cGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAAc                                                                         >  1:88954/1‑138 (MQ=255)

                                                        tCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCg                                                                       >  1:321723/1‑138 (MQ=255)

                                                        tCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCg                                                                       >  2:1414838/1‑138 (MQ=255)

                                                          aGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATaa                                                                           <  1:631257/132‑1 (MQ=255)

                                                          aGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATaa                                                                           >  2:631257/1‑132 (MQ=255)

                                                          aGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCgtg                                                                     >  2:77919/1‑138 (MQ=255)

                                                          aGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCgtg                                                                     >  1:817809/1‑138 (MQ=255)

                                                                   gTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAAtt                                                            >  1:641354/1‑138 (MQ=255)

                                                                   gTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGAGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAAtt                                                            <  1:1648894/138‑1 (MQ=255)

                                                                   gTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGATAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGCTGATAAACCGTGTTATAAAtt                                                            >  1:703463/1‑138 (MQ=255)

                                                                     cAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGCCGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCg                                                          <  1:1301000/138‑1 (MQ=255)

                                                                     cAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCg                                                          <  2:321723/138‑1 (MQ=255)

                                                                           gAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGAt                                                    <  2:1439399/138‑1 (MQ=255)

                                                                           gAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGAt                                                    <  2:641354/138‑1 (MQ=255)

                                                                           gAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGAt                                                    <  2:940472/138‑1 (MQ=255)

                                                                                 ggTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGt                                              <  2:564215/138‑1 (MQ=255)

                                                                                    catctcatcGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTAtt                                           >  1:646908/1‑138 (MQ=255)

                                                                                        tcatcGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGAt                                       >  1:855807/1‑138 (MQ=255)

                                                                                          atcGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGAttt                                     >  1:512962/1‑138 (MQ=255)

                                                                                            cGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTAc                                   <  2:318541/138‑1 (MQ=255)

                                                                                             gTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTAcc                                  >  2:437147/1‑138 (MQ=255)

                                                                                              ttAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTAccc                                 >  1:1288310/1‑138 (MQ=255)

                                                                                               tAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCa                                >  2:1758698/1‑138 (MQ=255)

                                                                                               tAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCa                                >  2:85578/1‑138 (MQ=255)

                                                                                                   gACATGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCAGCGt                            >  1:1406654/1‑138 (MQ=255)

                                                                                                       tGACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCAGCGTTTcg                        >  1:102395/1‑137 (MQ=255)

                                                                                                        gACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCAGCGTTTCCg                       <  1:1547391/138‑1 (MQ=255)

                                                                                                        gACGCAGATCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCAGCGTTTCCg                       >  1:875557/1‑138 (MQ=255)

                                                                                                               aTCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCAGCGTTTCCGCCAATTc                <  1:437147/138‑1 (MQ=255)

                                                                                                               aTCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCAGCGTTTCCGCCAATTc                <  1:301615/138‑1 (MQ=255)

                                                                                                               aTCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCAGCGTTTCCGCCAATTc                <  2:1037385/138‑1 (MQ=255)

                                                                                                               aTCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCAGCGTTTCCGCCAATTc                <  1:789506/138‑1 (MQ=255)

                                                                                                               aTCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCAGCGTTTCCGCCAATTc                <  2:1315391/138‑1 (MQ=255)

                                                                                                               aTCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCAGCGTTTCCGCCAATTc                <  2:1288310/138‑1 (MQ=255)

                                                                                                               aTCGTAACCGGTAAGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCAGCGTTTCCGCCAATTc                <  1:1037674/138‑1 (MQ=255)

                                                                                                                           aaGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCAGCGTTTCCGCCAATTCGACGGGTAAAgg    >  2:115989/1‑138 (MQ=255)

                                                                                                                           aaGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCAGCGTTTCCGCCAATTCGACGGGTAAAgg    >  2:920783/1‑138 (MQ=255)

                                                                                                                           aaGAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCAGCGTTTCCGCCAATTCGACGGGTAAAgg    >  1:881778/1‑138 (MQ=255)

                                                                                                                             gAAAGCAGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCAGCGTTTCCGCCAATTCGACGGGTAAAGGtt  <  2:88954/138‑1 (MQ=255)

GCGTGTAATATCCAGCCGCGCTTCGGTAATAAAGGCCAGCGTCCCTTCTGAACCCGTCAGAATGCGCGTCAGGTCGAACTCGGTCATCTCATCGTTAAAGACATGACGCAGATCGTAACCGGTAAGAAAGCGGTTAAGTTTGGGGAAGTTGTCGATAATTAACTGGCGTTGCTGACGGCAACGTTGATAAACCGTGTTATAAATTCGCCCGATTGTGGTATTGGATTTACCCAGCGTTTCCGCCAATTCGACGGGTAAAGGTT  >  NC_000913/1767846‑1768108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A