Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	120	93.5	3664254	88.3%	3235536	136.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,800,787	A→G	V595A (GTC→GCC)	thrS ←	threonine‑‑tRNA ligase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,800,787	0	A	G	100.0%	278.1 / NA	79	V595A (GTC→GCC)	thrS	threonine‑‑tRNA ligase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (40/39); total (40/39)

AATTGTTTAAGACTGCGGCTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGACCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCAATTCGTTAACGTATTCAGACTGT  >  NC_000913/1800652‑1800921

aaTTGTTTAAGACTGCGGCTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGcc                                                                                                                                      <  1:1001397/138‑1 (MQ=255)

aaTTGTTTAAGACTGCGGCTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGcc                                                                                                                                      >  1:1700003/1‑138 (MQ=255)

aaTTGTTTAAGACTGCGGCTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGcc                                                                                                                                      <  1:1306214/138‑1 (MQ=255)

aaTTGTTTAAGACTGCGGCTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGcc                                                                                                                                      >  1:1069997/1‑138 (MQ=255)

aaTTGTTTAAGACTGCGGCTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGcc                                                                                                                                      >  2:983022/1‑138 (MQ=255)

 aTTGTTTAAGACTGCGGCTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCa                                                                                                                                     <  2:1639852/138‑1 (MQ=255)

       tAAGACTGCGGCTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCatat                                                                                                                               >  2:496147/1‑138 (MQ=255)

       tAAGACTGCGGCTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCatat                                                                                                                               >  1:1012016/1‑138 (MQ=255)

              gCGGCTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGgac                                                                                                                        <  2:407386/138‑1 (MQ=255)

                 gCTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTTCACCTCTTTATTACCACAGGCCAGCATATATTGgacgcg                                                                                                                     >  2:890659/1‑138 (MQ=255)

                 gCTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGcc                                                                                                                                      >  2:1164701/1‑121 (MQ=255)

                 gCTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGgacgcg                                                                                                                     >  1:237463/1‑138 (MQ=255)

                 gCTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGgacgcg                                                                                                                     >  2:1486245/1‑138 (MQ=255)

                 gCTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGgacgcg                                                                                                                     >  2:297714/1‑138 (MQ=255)

                 gCTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGgacgcg                                                                                                                     >  2:539390/1‑138 (MQ=255)

                  cTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGgacgcga                                                                                                                    <  2:1748838/138‑1 (MQ=255)

                  cTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGgacgcga                                                                                                                    <  2:237463/138‑1 (MQ=255)

                    gCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGgacgcgacg                                                                                                                  <  2:1175530/138‑1 (MQ=255)

                     cGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGgacgcgacgc                                                                                                                 <  1:890659/138‑1 (MQ=255)

                       aaTCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCaa                                                                                                               >  2:1054429/1‑138 (MQ=255)

                                      cTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGAt                                                                                                <  1:1008405/138‑1 (MQ=255)

                                        tctcGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGAttt                                                                                              <  1:983022/138‑1 (MQ=255)

                                         ctcGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTTCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGAtttt                                                                                             >  2:455746/1‑138 (MQ=255)

                                             aTCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAg                                                                                         <  1:1535132/138‑1 (MQ=255)

                                                    cATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTTCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGGTCGCGGATTTTAAAGCCAAtct                                                                                  >  2:141109/1‑138 (MQ=255)

                                                    cATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGAt                                                                                                >  1:1156652/1‑124 (MQ=255)

                                                    cATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGAt                                                                                                <  2:1156652/124‑1 (MQ=255)

                                                       ttACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAAtcttct                                                                               <  2:1700003/138‑1 (MQ=255)

                                                            tCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCAttt                                                                          <  1:1054429/138‑1 (MQ=255)

                                                            tCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCAttt                                                                          <  1:1398523/138‑1 (MQ=255)

                                                             ccATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTtc                                                                         <  1:754983/138‑1 (MQ=255)

                                                              cATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAAtcttct                                                                               >  1:191421/1‑131 (MQ=255)

                                                              cATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAAtcttct                                                                               <  2:191421/131‑1 (MQ=255)

                                                              cATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTtct                                                                        >  2:597367/1‑138 (MQ=255)

                                                                tGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCa                                                                      >  2:773285/1‑138 (MQ=255)

                                                                tGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCa                                                                      <  1:773285/138‑1 (MQ=255)

                                                                  cTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAg                                                                    <  1:496147/138‑1 (MQ=255)

                                                                  cTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAg                                                                    <  1:444188/138‑1 (MQ=255)

                                                                         ggTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTTCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCtt                                                             <  1:539390/138‑1 (MQ=255)

                                                                          gTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCttt                                                            >  1:976247/1‑138 (MQ=255)

                                                                            cTTTACCACGGCGGGCGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTaa                                                          >  2:1526478/1‑138 (MQ=255)

                                                                                aCCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCaa                                                                     <  2:55959/123‑1 (MQ=255)

                                                                                aCCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCaa                                                                     >  1:55959/1‑123 (MQ=255)

                                                                                aCCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAaca                                                        <  1:240036/136‑1 (MQ=255)

                                                                                aCCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAaca                                                        >  2:240036/1‑136 (MQ=255)

                                                                                aCCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAaca                                                        <  1:969175/136‑1 (MQ=255)

                                                                                aCCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAaca                                                        >  2:969175/1‑136 (MQ=255)

                                                                                 ccACGGCGGGTGCGAACGGCAACTTTGCCTGATTCGACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAGTCTTCTCATTTCTCAAGTCTGCtt                                                             >  2:1619186/1‑130 (MQ=255)

                                                                                 ccACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCtt                                                             <  1:1619186/130‑1 (MQ=255)

                                                                                 ccACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGa                                                     >  1:747737/1‑138 (MQ=255)

                                                                                 ccACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGa                                                     >  1:1815804/1‑138 (MQ=255)

                                                                                 ccACGGCGGGAGGGGACGGGAACTTTGCCTGATTCCACCTCTTTATCACCACCGGCCAGCCTATATGGGTCGCGAGGCAAAGTTTGCTCGGGGAGTTTAAAGCCAATACTCTCTTTTTTTAAGACTGCTTTAACACGa                                                     >  2:1133615/1‑138 (MQ=255)

                                                                                   aCGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAAt                                                   <  2:366561/138‑1 (MQ=255)

                                                                                      gcggGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCt                                                              <  2:1688701/124‑1 (MQ=255)

                                                                                      gcggGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCt                                                              >  1:1688701/1‑124 (MQ=255)

                                                                                       cggGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAAt                                                   <  1:1683516/134‑1 (MQ=255)

                                                                                       cggGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAAt                                                   >  2:1683516/1‑134 (MQ=255)

                                                                                       cggGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGccc                                               >  2:1253698/1‑138 (MQ=255)

                                                                                       cggGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGccc                                               >  2:949080/1‑138 (MQ=255)

                                                                                         ggTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCt                                                                 <  2:1259459/118‑1 (MQ=255)

                                                                                         ggTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCt                                                                 >  1:1259459/1‑118 (MQ=255)

                                                                                         ggTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGc                                             >  1:1155428/1‑138 (MQ=255)

                                                                                                aCGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGAt                                      >  1:86563/1‑138 (MQ=255)

                                                                                                  ggCAACTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAg                                    >  2:971267/1‑138 (MQ=255)

                                                                                                      aCTTTGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGtttt                                >  2:1691225/1‑138 (MQ=255)

                                                                                                         ttGCCTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGc                             <  1:1691225/138‑1 (MQ=255)

                                                                                                            ccTGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTc                          >  2:1208132/1‑138 (MQ=255)

                                                                                                              tGATTCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCaa                        >  2:194741/1‑138 (MQ=255)

                                                                                                                  tCCACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCAATTCg                    <  1:1133615/138‑1 (MQ=255)

                                                                                                                   ccACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCAAtt                      >  1:1616638/1‑135 (MQ=255)

                                                                                                                   ccACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCAAtt                      <  2:1616638/135‑1 (MQ=255)

                                                                                                                   ccACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCAATTCGt                   >  1:859889/1‑138 (MQ=255)

                                                                                                                    cACCTCTTTATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCAATTCGtt                  <  1:455746/138‑1 (MQ=255)

                                                                                                                          tttATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCAATTCGTTAACGTa            <  2:1069997/138‑1 (MQ=255)

                                                                                                                          tttATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCAATTCGTTAACGTa            <  1:1208132/138‑1 (MQ=255)

                                                                                                                            tATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCAATTCGTTAACGTAtt          <  2:459540/138‑1 (MQ=255)

                                                                                                                            tATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCAATTCGTTAACGTAtt          <  2:1155428/138‑1 (MQ=255)

                                                                                                                            tATCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCAATTCGTTAACGTAtt          >  2:1430782/1‑138 (MQ=255)

                                                                                                                              tCACCACAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCAATTCGTTAACGTATTCa        >  1:1663364/1‑138 (MQ=255)

                                                                                                                                 ccacAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCAAtt                      >  2:462632/1‑121 (MQ=255)

                                                                                                                                 ccacAGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCAAtt                      <  1:462632/121‑1 (MQ=255)

                                                                                                                                   acaGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCAATTCGTTAACGTATTCAGACtg   >  1:1812566/1‑138 (MQ=255)

                                                                                                                                    caGGCCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCAATTCGTTAACGTATTCAGACtgt  <  2:1812566/138‑1 (MQ=255)

AATTGTTTAAGACTGCGGCTGCGAATCTCTTGTTGCAGCTTCTCGATCACTTCATTTACGTCCATGCTTCCCAGGTCTTTACCACGGCGGGTGCGAACGGCAACTTTGCCTGATTCCACCTCTTTATCACCACAGACCAGCATATATGGGACGCGACGCAAAGTGTGCTCGCGGATTTTAAAGCCAATCTTCTCATTTCTCAAGTCTGCTTTAACACGAATGCCCGCATTTGATAGTTTTTGCGTCAATTCGTTAACGTATTCAGACTGT  >  NC_000913/1800652‑1800921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A