Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	120	93.5	3664254	88.3%	3235536	136.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,907,400	G→A	N12N (AAC→AAT)	cspC ←	stress protein, member of the CspA family

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,907,400	0	G	A	100.0%	368.8 / NA	103	N12N (AAC→AAT)	cspC	stress protein, member of the CspA family
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (49/54); total (49/54)

Only 100 of 103 total aligned reads displayed.

GTCCTGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGCACCAATATAAGGCTCGGCAGAGAA  >  NC_000913/1907268‑1907534

gTCCTGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGaa                                                                                                                                   >  2:1674792/1‑138 (MQ=255)

   cTGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCa                                                                                                                                <  2:1056101/138‑1 (MQ=255)

    tGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCAtt                                                                                                                                      <  1:753463/131‑1 (MQ=255)

    tGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCAtt                                                                                                                                      >  2:753463/1‑131 (MQ=255)

    tGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCAc                                                                                                                               >  1:321060/1‑138 (MQ=255)

     gAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCAtt                                                                                                                                      <  1:393147/130‑1 (MQ=255)

     gAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCAtt                                                                                                                                      >  2:393147/1‑130 (MQ=255)

                    cGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTaa                                                                                                               >  1:1352115/1‑138 (MQ=255)

                            ccTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGcc                                                                                                       <  2:1477129/138‑1 (MQ=255)

                               tCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCAtt                                                                                                    <  1:1406083/138‑1 (MQ=255)

                                  gCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGa                                                                                                 >  2:1324923/1‑138 (MQ=255)

                                  gCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGa                                                                                                 >  2:1721967/1‑138 (MQ=255)

                                   ccAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGaa                                                                                                <  1:1674792/138‑1 (MQ=255)

                                    cAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGaaa                                                                                               <  1:956925/138‑1 (MQ=255)

                                                   aTTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGt                                                                                >  1:432424/1‑138 (MQ=255)

                                                     tACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGttt                                                                              >  2:888323/1‑138 (MQ=255)

                                                             aTAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGcc                                                                      <  2:885795/138‑1 (MQ=255)

                                                             aTAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGcc                                                                      <  2:1352115/138‑1 (MQ=255)

                                                             aTAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGcc                                                                      <  2:1821216/138‑1 (MQ=255)

                                                             aTAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGcc                                                                      >  1:1821216/1‑138 (MQ=255)

                                                             aTAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGcc                                                                      <  1:1752724/138‑1 (MQ=255)

                                                             aTAGCGGAGAAGTGTAAGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGcc                                                                      <  1:1519932/138‑1 (MQ=255)

                                                              tAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGccc                                                                     <  1:1377430/138‑1 (MQ=255)

                                                              tAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGccc                                                                     <  1:428084/138‑1 (MQ=255)

                                                              tAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGccc                                                                     <  2:869280/138‑1 (MQ=255)

                                                              tAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGccc                                                                     >  2:1234859/1‑138 (MQ=255)

                                                              tAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCCTAGATTGTTTTCTTCGccc                                                                     <  2:1298603/138‑1 (MQ=255)

                                                                 cGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCa                                                                  <  1:1627767/138‑1 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGccc                                                                     >  1:1694496/1‑133 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGccc                                                                     <  2:1694496/133‑1 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAgg                                                                >  2:225435/1‑138 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAgg                                                                >  2:1158543/1‑138 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAgg                                                                >  2:1066737/1‑138 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAgg                                                                >  2:231628/1‑138 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAgg                                                                >  2:694094/1‑138 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAgg                                                                <  2:851970/138‑1 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAgg                                                                >  2:1304991/1‑138 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAgg                                                                >  1:922160/1‑138 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAgg                                                                >  2:1744828/1‑138 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAgg                                                                >  1:833574/1‑138 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAgg                                                                >  2:926855/1‑138 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAgg                                                                >  1:702217/1‑138 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAgg                                                                >  1:1795796/1‑138 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAgg                                                                >  1:482135/1‑138 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAgg                                                                >  1:119899/1‑138 (MQ=255)

                                                                   gagaAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAgg                                                                >  1:343177/1‑138 (MQ=255)

                                                                       aGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATa                                                            <  1:1741057/138‑1 (MQ=255)

                                                                        gtgtACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCa                                                              <  1:1001570/135‑1 (MQ=255)

                                                                        gtgtACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCa                                                              >  2:1001570/1‑135 (MQ=255)

                                                                        gtgtACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATaa                                                           >  2:517526/1‑138 (MQ=255)

                                                                        gtgtACGAACACATCTTTGCTGCCATCAGCCGAAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATaa                                                           >  2:1624209/1‑138 (MQ=255)

                                                                            aCGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATa                                                       <  2:387303/138‑1 (MQ=255)

                                                                            aCGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATa                                                       <  1:662384/138‑1 (MQ=255)

                                                                             cGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAg                                                      >  2:892139/1‑138 (MQ=255)

                                                                             cGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAg                                                      >  2:1500839/1‑138 (MQ=255)

                                                                             cGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAg                                                      >  2:1364035/1‑138 (MQ=255)

                                                                               aaCACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGccc                                                                     <  1:363015/121‑1 (MQ=255)

                                                                               aaCACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGccc                                                                     >  2:363015/1‑121 (MQ=255)

                                                                                  acaTCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATaaa                                                 <  1:892139/138‑1 (MQ=255)

                                                                                    aTCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAAc                                               <  1:1304991/138‑1 (MQ=255)

                                                                                    aTCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAAc                                               <  1:1364035/138‑1 (MQ=255)

                                                                                    aTCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAAc                                               <  2:1326987/138‑1 (MQ=255)

                                                                                     tCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACt                                              <  1:1328537/138‑1 (MQ=255)

                                                                                     tCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACt                                              <  2:833574/138‑1 (MQ=255)

                                                                                      cTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATaaa                                                 >  1:40099/1‑134 (MQ=255)

                                                                                      cTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATaaa                                                 <  2:40099/134‑1 (MQ=255)

                                                                                      cTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAAc                                               >  1:859364/1‑136 (MQ=255)

                                                                                      cTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAAc                                               <  2:859364/136‑1 (MQ=255)

                                                                                       tttGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGa                                            <  1:1234859/138‑1 (MQ=255)

                                                                                       tttGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGa                                            <  1:888323/138‑1 (MQ=255)

                                                                                       tttGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGa                                            <  2:702217/138‑1 (MQ=255)

                                                                                         tgctgcCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGaca                                          <  1:1624209/138‑1 (MQ=255)

                                                                                          gctgcCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGacac                                         <  2:177894/138‑1 (MQ=255)

                                                                                            tgcCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACt                                              <  1:1532661/131‑1 (MQ=255)

                                                                                            tgcCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACt                                              >  2:1532661/1‑131 (MQ=255)

                                                                                            tgcCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACAt                                       <  1:1545985/138‑1 (MQ=255)

                                                                                                aTCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGaca                                          <  1:1318675/131‑1 (MQ=255)

                                                                                                aTCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGaca                                          >  2:1318675/1‑131 (MQ=255)

                                                                                                  cAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGc                                 >  2:1755438/1‑138 (MQ=255)

                                                                                                  cAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGc                                 <  2:119899/138‑1 (MQ=255)

                                                                                                  cAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGc                                 >  1:1512693/1‑138 (MQ=255)

                                                                                                     ccGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGa                                            <  1:18688/124‑1 (MQ=255)

                                                                                                     ccGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATATGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGa                                            >  2:18688/1‑124 (MQ=255)

                                                                                                      cGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGa                             <  1:1174139/138‑1 (MQ=255)

                                                                                                      cGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGa                             <  1:125977/138‑1 (MQ=255)

                                                                                                      cGGAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGa                             <  2:856044/138‑1 (MQ=255)

                                                                                                        gAGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAgg                           <  2:432424/138‑1 (MQ=255)

                                                                                                         aGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGc                          <  2:321060/138‑1 (MQ=255)

                                                                                                         aGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGc                          <  2:922160/138‑1 (MQ=255)

                                                                                                         aGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGc                          <  1:1324923/138‑1 (MQ=255)

                                                                                                         aGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGc                          <  1:1239287/138‑1 (MQ=255)

                                                                                                         aGTAATGAAGCCAAAACCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGc                          <  1:1500839/138‑1 (MQ=255)

                                                                                                                     aaaaCCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAATATAGATAAAACTGACACATTACTGCATGAGGCACCAATATAAgg              >  1:1408487/1‑138 (MQ=255)

                                                                                                                     aaaaCCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGCACCAATATAAgg              >  1:716138/1‑138 (MQ=255)

                                                                                                                     aaaaCCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGCACCAATATAAgg              >  1:243499/1‑138 (MQ=255)

                                                                                                                     aaaaCCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGCACCAATATAAgg              >  1:162694/1‑138 (MQ=255)

                                                                                                                       aaCCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGCACCAATATAAGGCt            >  1:128845/1‑138 (MQ=255)

                                                                                                                       aaCCTTTAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGCACCAATATAAGGCt            >  2:347548/1‑138 (MQ=255)

                                                                                                                             tAGACTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGCACCAATATAAGGCTCGGCag      >  1:658082/1‑138 (MQ=255)

                                                                                                                                 cTCATTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGCACCAATATAAGGCTCGGCAGAGaa  <  2:716138/138‑1 (MQ=255)

GTCCTGAATTTCGAACTCAACGTTCTGACCTTCAGCCAGAGTTTTGAAGCCATTACCCTGGATAGCGGAGAAGTGTACGAACACATCTTTGCTGCCATCAGCCGGAGTAATGAAGCCAAAACCTTTAGACTCGTTGAACCACTTAACCTGACCTTTAATCTTTGCCATTTGAAAAATTCCTTAGATTGTTTTCTTCGCCCGCAGGCATAACATAGATAAAACTGACACATTACTGCATGAGGCACCAATATAAGGCTCGGCAGAGAA  >  NC_000913/1907268‑1907534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A