Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	191	83.5	2830284	99.3%	2810472	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,909,860	G→A	G80G (GGC→GGT)	kdgR ←	DNA‑binding transcriptional repressor KdgR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,909,860	0	G	A	100.0%	354.8 / NA	102	G80G (GGC→GGT)	kdgR	DNA‑binding transcriptional repressor KdgR
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (50/52); total (50/52)

Only 100 of 103 total aligned reads displayed.

GAGTCAATTTTGTGAATGTAAACAATACTGTCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCGCCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCTTTTTGACATCATGACGCGCTGCGACAGCTCG  >  NC_000913/1909723‑1909995

gagTCAATTTTGTGAATGTAAACAATACTGTCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCAcc                                                                                                                                       >  2:811268/1‑140 (MQ=255)

gagTCAATTTTGTGAATGTAAACAATACTGTCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCAcc                                                                                                                                       >  2:756313/1‑140 (MQ=255)

gagTCAATTTTGTGAATGTAAACAATACTGTCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCAcc                                                                                                                                       <  2:36447/140‑1 (MQ=255)

gagTCAATTTTGTGAATGTAAACAATACTGTCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCAcc                                                                                                                                       >  1:207423/1‑140 (MQ=255)

 agTCAATTTTGTGAATGTAAACAATACTGTCTTCGTCCAGTGCGCTGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCAccc                                                                                                                                      >  2:606644/1‑140 (MQ=255)

 agTCAATTTTGTGAATGTAAACAATACTGTCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCAccc                                                                                                                                      <  1:298797/140‑1 (MQ=255)

 agTCAATTTTGTGAATGTAAACAATACTGTCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCAccc                                                                                                                                      >  2:232810/1‑140 (MQ=255)

  gTCAATTTTGTGAATGTAAACAATACTGTCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCa                                                                                                                                     >  2:1142538/1‑140 (MQ=255)

    cAATTTTGTGAATGTAAACAATACTGTCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGt                                                                                                                                   >  2:235396/1‑140 (MQ=255)

      aTTTTGTGAATGTAAACAATACTGTCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGCTc                                                                                                                                 >  2:1331056/1‑140 (MQ=255)

             gAATGTAAACAATACTGTCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAAt                                                                                                                          >  2:374848/1‑140 (MQ=255)

                    aaCAATACTGTCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTtcaggg                                                                                                                   >  2:1257752/1‑140 (MQ=255)

                    aaCAATACTGTCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGCTCAAACAATTtcaggg                                                                                                                   <  1:1331056/140‑1 (MQ=255)

                     aCAATACTGTCTTCGTCCAGTGCGCTGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTtcagggt                                                                                                                  <  1:606644/140‑1 (MQ=255)

                            tGTCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGaa                                                                                                           >  1:1170937/1‑140 (MQ=255)

                              tCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTtcagggt                                                                                                                  >  1:1011988/1‑131 (MQ=255)

                              tCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTtcagggt                                                                                                                  <  2:1011988/131‑1 (MQ=255)

                              tCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAata                                                                                                         >  2:432659/1‑140 (MQ=255)

                              tCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAata                                                                                                         >  1:2837/1‑140 (MQ=255)

                               cTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAatat                                                                                                        <  1:1257752/140‑1 (MQ=255)

                                 tCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATAttt                                                                                                      >  1:1324182/1‑140 (MQ=255)

                                 tCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATAttt                                                                                                      >  2:1269400/1‑140 (MQ=255)

                                 tCGTCCAGGGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATAttt                                                                                                      >  1:1254921/1‑140 (MQ=255)

                                   gTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTtct                                                                                                    >  2:1033500/1‑140 (MQ=255)

                                   gTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTtct                                                                                                    >  2:997342/1‑140 (MQ=255)

                                   gTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTtct                                                                                                    >  1:1182972/1‑140 (MQ=255)

                                    tCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTtctc                                                                                                   >  1:720503/1‑140 (MQ=255)

                                      cAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCg                                                                                                 <  1:235396/140‑1 (MQ=255)

                                       aGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGa                                                                                                <  2:1254921/140‑1 (MQ=255)

                                        gTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGAc                                                                                               >  2:555545/1‑140 (MQ=255)

                                        gTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGAc                                                                                               >  2:793165/1‑140 (MQ=255)

                                        gTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGAc                                                                                               >  2:1063553/1‑140 (MQ=255)

                                        gTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGAc                                                                                               >  2:1171524/1‑140 (MQ=255)

                                        gTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGAc                                                                                               >  1:497210/1‑140 (MQ=255)

                                          gcgcCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTc                                                                                             >  2:1358639/1‑140 (MQ=255)

                                           cgcCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTcc                                                                                            <  1:1282840/140‑1 (MQ=255)

                                           cgcCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTcc                                                                                            <  1:997342/140‑1 (MQ=255)

                                           cgcCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTcc                                                                                            <  1:898295/140‑1 (MQ=255)

                                           cgcCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTcc                                                                                            <  1:756313/140‑1 (MQ=255)

                                                aGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTc                                                                                       <  2:489538/140‑1 (MQ=255)

                                                aGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTc                                                                                       <  2:1381032/140‑1 (MQ=255)

                                                   tGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCg                                                                                                 >  2:797201/1‑127 (MQ=255)

                                                   tGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTg                                                                                    <  2:132564/140‑1 (MQ=255)

                                                    ggATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTgc                                                                                   <  1:1142538/140‑1 (MQ=255)

                                                     gATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTgcg                                                                                  <  1:174177/140‑1 (MQ=255)

                                                     gATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTgcg                                                                                  <  2:1182972/140‑1 (MQ=255)

                                                     gATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTgcg                                                                                  <  2:497210/140‑1 (MQ=255)

                                                       tAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTg                                                                                    >  1:1247712/1‑136 (MQ=255)

                                                       tAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTg                                                                                    <  2:1247712/136‑1 (MQ=255)

                                                         gTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCGAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCcac                                                                              <  2:615380/140‑1 (MQ=255)

                                                          tttCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCcaca                                                                             >  1:523587/1‑140 (MQ=255)

                                                          tttCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCcaca                                                                             <  1:999045/140‑1 (MQ=255)

                                                            tCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATa                                                                           >  2:1126587/1‑140 (MQ=255)

                                                             cTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATaa                                                                          >  1:750083/1‑140 (MQ=255)

                                                               ttGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAAcc                                                                        >  2:995934/1‑140 (MQ=255)

                                                               ttGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAAcc                                                                        >  2:752564/1‑140 (MQ=255)

                                                                tGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCt                                                                       <  2:327933/140‑1 (MQ=255)

                                                                  gTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTaa                                                                     <  1:752564/140‑1 (MQ=255)

                                                                  gTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTaa                                                                     <  2:655814/140‑1 (MQ=255)

                                                                  gTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTaa                                                                     >  2:947343/1‑140 (MQ=255)

                                                                   tCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAg                                                                    >  1:1116712/1‑140 (MQ=255)

                                                                    cAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAgg                                                                   <  2:1324182/140‑1 (MQ=255)

                                                                    cAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAgg                                                                   <  1:672436/140‑1 (MQ=255)

                                                                        cGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAgg                                                                   >  2:470629/1‑136 (MQ=255)

                                                                        cGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAgg                                                                   <  1:470629/136‑1 (MQ=255)

                                                                         gggAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTc                                                              <  2:123072/140‑1 (MQ=255)

                                                                         gggAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTc                                                              <  2:186872/140‑1 (MQ=255)

                                                                         gggAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTc                                                              <  1:277842/140‑1 (MQ=255)

                                                                          ggAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCa                                                             >  2:1295903/1‑140 (MQ=255)

                                                                          ggAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCa                                                             <  2:720503/140‑1 (MQ=255)

                                                                            agagCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATg                                                           <  2:2837/140‑1 (MQ=255)

                                                                             gagCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATgg                                                          <  1:995934/140‑1 (MQ=255)

                                                                              agCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGt                                                         <  1:811268/140‑1 (MQ=255)

                                                                                  cACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGt                                                     >  2:1166765/1‑140 (MQ=255)

                                                                                     gCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTaaa                                                  <  1:974237/140‑1 (MQ=255)

                                                                                         cTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGc                                              >  1:631249/1‑140 (MQ=255)

                                                                                            gATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTGCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCGAAGGTTTTCATGGTCTGTAAAAAGCGAt                                           <  2:1012762/140‑1 (MQ=255)

                                                                                                 cTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAGGCGATAAACg                                      >  1:862312/1‑140 (MQ=255)

                                                                                                 cTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACg                                      >  2:349260/1‑140 (MQ=255)

                                                                                                  tGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACgg                                     <  2:523587/140‑1 (MQ=255)

                                                                                                    cgcTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTg                                   >  2:67410/1‑140 (MQ=255)

                                                                                                    cgcTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTg                                   <  1:432659/140‑1 (MQ=255)

                                                                                                      cTACGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCt                                 >  1:1203881/1‑140 (MQ=255)

                                                                                                         cGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCtttt                              <  1:555545/140‑1 (MQ=255)

                                                                                                         cGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCtttt                              <  1:1166765/140‑1 (MQ=255)

                                                                                                         cGAATTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCtttt                              >  2:481084/1‑140 (MQ=255)

                                                                                                           aaTTAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCTTTTTg                            <  2:1000386/140‑1 (MQ=255)

                                                                                                              tAAATCGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCTTTTTGAca                         >  2:893182/1‑140 (MQ=255)

                                                                                                                   cGACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCTTTTTGACATCATg                    <  1:893182/140‑1 (MQ=255)

                                                                                                                    gACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAGGCGATAAACGGTGCTTTTTGACATCATGa                   <  2:862312/140‑1 (MQ=255)

                                                                                                                    gACGTTTTGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCTTTTTGACATCATGa                   <  2:1203881/140‑1 (MQ=255)

                                                                                                                        ttttGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCTTTTTGACATCATGAcgcg               <  1:1358639/140‑1 (MQ=255)

                                                                                                                        ttttGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCTTTTTGACATCATGAcgcg               <  2:1170937/140‑1 (MQ=255)

                                                                                                                         tttGTAACGCGCGAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCTTTTTGACATCATGACgcgc              <  1:132265/140‑1 (MQ=255)

                                                                                                                                cgcgcgAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCTTTTTGACATCATGACGCGCTGCGACa       <  1:947343/140‑1 (MQ=255)

                                                                                                                                 gcgcgAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCTTTTTGACATCATGACGCGCTGCGACAg      <  2:750083/140‑1 (MQ=255)

                                                                                                                                  cgcgAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCTTTTTGACATCATGACGCGCTGCGACAGc     <  1:815257/140‑1 (MQ=255)

                                                                                                                                   gcgAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCTTTTTGACATCATGACGCGCTGCGACAGCt    >  2:73991/1‑140 (MQ=255)

                                                                                                                                    cgAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCTTTTTGACATCATGACGCGCTGCGACAGCTc   >  2:315672/1‑140 (MQ=255)

                                                                                                                                     gAGCACCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCTTTTTGACATCATGACGCGCTGCGACAGCTCg  <  1:1063553/140‑1 (MQ=255)

GAGTCAATTTTGTGAATGTAAACAATACTGTCTTCGTCCAGTGCGCCGAGGTGGATAGTTTCTTTGGTCAGGCGGGAGAGCTCACGCATCTGGATATCTGCGCTACGAATTAAATCGACGTTTTGTAACGCGCGAGCGCCCAGTTCAAACAATTTCAGGGTCAGGGAATATTTCTCCGACTCCCCTTCCTGCGCCACATAACCTAAGGTTTTCATGGTCTGTAAAAAGCGATAAACGGTGCTTTTTGACATCATGACGCGCTGCGACAGCTCG  >  NC_000913/1909723‑1909995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A