Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	120	93.5	3664254	88.3%	3235536	136.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,081,197	C→T	W22* (TGG→TGA)	sbmC ←	DNA gyrase inhibitor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,081,197	0	C	T	100.0%	450.4 / NA	127	W22* (TGG→TGA)	sbmC	DNA gyrase inhibitor
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (55/72); total (55/72)

Only 100 of 129 total aligned reads displayed.

GGTGTCGCAGCGTAATTTTTCGGCGGGTGTTTCATCTGGATTGTCGTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAATTAAAACCACAAGGAATGAGTGT  >  NC_000913/2081062‑2081330

   gtCGCAGCGTAATTTTTCGGCGGGTGTTTCATCTGGATTGTCGTAATAGACAGCAACCCACTCCTTCGGCACCATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACgg                                                                                                                                  >  2:1339966/1‑138 (MQ=255)

      gCAGCGTAATTTTTCGGCGGGTGTTTCATCTGGATTGTCGTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGcc                                                                                                                               >  1:486798/1‑138 (MQ=255)

      gCAGCGTAATTTTTCGGCGGGTGTTTCATCTGGATTGTCGTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGcc                                                                                                                               >  2:809034/1‑138 (MQ=255)

      gCAGCGTAATTTTTCGGCGGGTGTTTCATCTGGATTGTCGTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGcc                                                                                                                               <  1:718694/138‑1 (MQ=255)

      gCAGCGTAATTTTTCGGCGGGTGTTTCATCTGGATTGTCGTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGcc                                                                                                                               <  1:974342/138‑1 (MQ=255)

        aGCGTAATTTTTCGGCGGGTGTTTCATCTGGATTGTCGTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCaa                                                                                                                             <  2:286249/138‑1 (MQ=255)

              aTTTTTCGGCGGGTGTTTCATCTGGATTGTCGTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGAt                                                                                                                       <  2:486798/138‑1 (MQ=255)

                             tttCATCTGGATTGTCGTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACgg                                                                                                        <  2:956608/138‑1 (MQ=255)

                             tttCATCTGGATTGTCGTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACgg                                                                                                        <  2:1687052/138‑1 (MQ=255)

                              ttCATCTGGATTGTCGTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGt                                                                                                       <  2:778163/138‑1 (MQ=255)

                                      gATTGTCGTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACGCACATCATCAACTGCTCAACGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGACACCTGCAACGGTACGTTtct                                                                                               >  1:1415330/1‑138 (MQ=255)

                                       aTTGTCGTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTtctc                                                                                              >  2:1516327/1‑138 (MQ=255)

                                             gTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTg                                                                                        >  2:1270735/1‑138 (MQ=255)

                                             gTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTg                                                                                        <  1:888270/138‑1 (MQ=255)

                                                  aGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTaa                                                                                   >  2:230079/1‑138 (MQ=255)

                                                  aGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTaa                                                                                   >  2:411783/1‑138 (MQ=255)

                                                     cAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAAtct                                                                                <  1:1454534/138‑1 (MQ=255)

                                                       gCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTg                                                                                        <  1:1218148/128‑1 (MQ=255)

                                                       gCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTg                                                                                        >  2:1218148/1‑128 (MQ=255)

                                                       gCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCg                                                                              >  2:315191/1‑138 (MQ=255)

                                                       gCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCg                                                                              >  2:1003570/1‑138 (MQ=255)

                                                        cAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGt                                                                             >  1:705447/1‑138 (MQ=255)

                                                        cAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACCGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGt                                                                             >  1:924029/1‑138 (MQ=255)

                                                         aaCCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTGTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTa                                                                            >  2:1638463/1‑138 (MQ=255)

                                                         aaCCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACTAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTa                                                                            >  1:785359/1‑138 (MQ=255)

                                                         aaCCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCtt                                                                                     >  2:1232493/1‑129 (MQ=255)

                                                         aaCCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCtt                                                                                     <  1:1232493/129‑1 (MQ=255)

                                                             cACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTc                                                                        <  1:696474/138‑1 (MQ=255)

                                                               cTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCAt                                                                      <  1:1772301/138‑1 (MQ=255)

                                                                  cTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGAc                                                                   >  1:1276908/1‑138 (MQ=255)

                                                                  cTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGAc                                                                   >  1:563930/1‑138 (MQ=255)

                                                                   ttCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACg                                                                  <  1:967618/138‑1 (MQ=255)

                                                                   ttCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACg                                                                  <  1:1270735/138‑1 (MQ=255)

                                                                   ctCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACg                                                                  <  2:17841/137‑1 (MQ=255)

                                                                    tCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGc                                                                 >  1:470141/1‑138 (MQ=255)

                                                                     cGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGcc                                                                >  2:814084/1‑138 (MQ=255)

                                                                      ggCACAATATTTTTGCTATCTACCCGCATCATCAACTGCTCAAAGCGTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCt                                                               <  2:1415330/138‑1 (MQ=255)

                                                                       gCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCAt                                                                      <  2:138737/130‑1 (MQ=255)

                                                                       gCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCAt                                                                      >  1:138737/1‑130 (MQ=255)

                                                                        cacaATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTcc                                                             <  2:1558242/138‑1 (MQ=255)

                                                                            atatTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTg                                                         >  1:1757039/1‑138 (MQ=255)

                                                                            atatTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTg                                                         >  1:1022070/1‑138 (MQ=255)

                                                                             tatTTTTGCTATCTACCCACATCATTAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGa                                                        <  1:1486021/138‑1 (MQ=255)

                                                                             tatTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGa                                                        <  1:518372/138‑1 (MQ=255)

                                                                              atTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGAt                                                       <  2:569437/138‑1 (MQ=255)

                                                                              atTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGAt                                                       <  2:454543/138‑1 (MQ=255)

                                                                              atTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGAt                                                       <  1:947174/138‑1 (MQ=255)

                                                                                ttttGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATAc                                                     <  2:705447/138‑1 (MQ=255)

                                                                                ttttGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATAc                                                     <  1:208993/138‑1 (MQ=255)

                                                                                ttttGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATAc                                                     <  1:230079/138‑1 (MQ=255)

                                                                                ttttGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATAc                                                     <  1:315191/138‑1 (MQ=255)

                                                                                ttttGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATAc                                                     <  2:1022070/138‑1 (MQ=255)

                                                                                ttttGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATAc                                                     <  1:437064/138‑1 (MQ=255)

                                                                                ttttGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATAc                                                     <  2:45185/138‑1 (MQ=255)

                                                                                   tGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGt                                                  <  2:1757039/138‑1 (MQ=255)

                                                                                    gCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGAt                                                       <  2:783643/132‑1 (MQ=255)

                                                                                    gCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGAt                                                       >  1:783643/1‑132 (MQ=255)

                                                                                     cTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTGCATTGATACTGttt                                                <  1:411783/138‑1 (MQ=255)

                                                                                     cTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGttt                                                <  2:791698/138‑1 (MQ=255)

                                                                                     cTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGttt                                                <  2:470141/138‑1 (MQ=255)

                                                                                     cTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTATGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGttt                                                <  1:1080892/138‑1 (MQ=255)

                                                                                        tCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTta                                             <  1:1130503/138‑1 (MQ=255)

                                                                                        tCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTta                                             <  1:189393/138‑1 (MQ=255)

                                                                                        tCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTta                                             <  2:112607/138‑1 (MQ=255)

                                                                                         cTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATAc                                                     >  2:917043/1‑129 (MQ=255)

                                                                                          tACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTtata                                           <  2:1507160/138‑1 (MQ=255)

                                                                                          tACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTtata                                           <  2:763884/138‑1 (MQ=255)

                                                                                                   catcaACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGtata                                  >  1:888730/1‑138 (MQ=255)

                                                                                                    atcaACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAg                                 >  1:922948/1‑138 (MQ=255)

                                                                                                      caACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGttt                                                <  1:558981/121‑1 (MQ=255)

                                                                                                      caACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGttt                                                >  2:558981/1‑121 (MQ=255)

                                                                                                      caACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTta                                             >  2:1590624/1‑124 (MQ=255)

                                                                                                      caACTGCTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGtt                               >  2:637253/1‑138 (MQ=255)

                                                                                                            cTCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTG‑TTTTATATACAGTATAGTTGCAAAAt                        <  1:814084/138‑1 (MQ=255)

                                                                                                             tCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTtatat                                          >  1:852716/1‑120 (MQ=255)

                                                                                                             tCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTtata                                           >  1:1362541/1‑119 (MQ=255)

                                                                                                             tCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTtata                                           <  2:1362541/119‑1 (MQ=255)

                                                                                                             tCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAAt                        >  1:1714589/1‑138 (MQ=255)

                                                                                                             tCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAAt                        <  1:107026/138‑1 (MQ=255)

                                                                                                             tCAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAAt                        >  1:1346995/1‑138 (MQ=255)

                                                                                                              cAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAAtt                       >  1:744832/1‑138 (MQ=255)

                                                                                                              cAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAAtt                       >  1:774380/1‑138 (MQ=255)

                                                                                                              cAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAAtt                       >  1:1258371/1‑138 (MQ=255)

                                                                                                              cAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAAtt                       >  1:471666/1‑138 (MQ=255)

                                                                                                              cAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAAtt                       >  1:358988/1‑138 (MQ=255)

                                                                                                              cAAAGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAAtt                       >  1:1345261/1‑138 (MQ=255)

                                                                                                               aaaGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAATTa                      <  2:110440/138‑1 (MQ=255)

                                                                                                                 aGCCTTTCTTTACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAATTaaa                    >  2:478026/1‑138 (MQ=255)

                                                                                                                    ctttctttACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAATTAAAAcc                 <  2:922948/138‑1 (MQ=255)

                                                                                                                     tttctttACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAATTAAAACca                <  1:1013999/138‑1 (MQ=255)

                                                                                                                     tttctttACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAATTAAAACca                <  1:1764151/138‑1 (MQ=255)

                                                                                                                      ttctttACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAATTAAAACcac               <  2:774380/138‑1 (MQ=255)

                                                                                                                      ttctttACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAATTAAAACcac               <  2:1258371/138‑1 (MQ=255)

                                                                                                                        ctttACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAATTAAAACCACaa             >  1:221315/1‑138 (MQ=255)

                                                                                                                        ctttACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAATTAAAACCACaa             >  2:1230537/1‑138 (MQ=255)

                                                                                                                         tttACCGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAATTAAAACCACAAg            <  1:1183815/138‑1 (MQ=255)

                                                                                                                              cGTCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAATTAAAACCACAAGGAATg       <  1:166121/138‑1 (MQ=255)

                                                                                                                                tCTGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAATTAAAACCACAAGGAATGAg     <  2:221315/138‑1 (MQ=255)

                                                                                                                                  tGTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAATTAAAACCACAAGGAATGAgtg   >  2:1332987/1‑138 (MQ=255)

                                                                                                                                   gTTCTCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAATTAAAACCACAAGGAATGAgtgt  >  1:1663388/1‑138 (MQ=255)

GGTGTCGCAGCGTAATTTTTCGGCGGGTGTTTCATCTGGATTGTCGTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTTTTATATACAGTATAGTTGCAAAATTAAAACCACAAGGAATGAGTGT  >  NC_000913/2081062‑2081330

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A