Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	120	93.5	3664254	88.3%	3235536	136.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,688,887	+G	coding (620/714 nt)	qseG ←	outer membrane lipoprotein QseG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,688,884	1	.	G	100.0%	239.9 / NA	65	R208P (CGC→CCC)	qseG	outer membrane lipoprotein QseG
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (30/35); total (30/35)

AATCCCGGATCGTCATCGACCAATAATAAATGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGC‑GGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTGGCGCAATGTATCCAGCTCGCTGTCGCTGGACTGCTGGA  >  NC_000913/2688754‑2689010

aaTCCCGGATCGACATCGACCAATAATAAATGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGC‑ggggtcg                                                                                                                         <  1:720889/138‑5 (MQ=255)

   cccGGATCGTCATCGACCAATAATAAATGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCgaga                                                                                                                       >  1:819793/1‑138 (MQ=255)

   cccGGATCGTCATCGACCAATAATAAATGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCgaga                                                                                                                       >  1:456166/1‑138 (MQ=255)

     cGGATCGTCATCGACCAATAATAAATGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGc                                                                                                                     <  2:456166/138‑1 (MQ=255)

     cGGATCGTCATCGACCAATAATAAATGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGc                                                                                                                     <  1:623121/138‑1 (MQ=255)

     cGGATCGTCATCGACCAATAATAAATGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGc                                                                                                                     <  2:1573204/138‑1 (MQ=255)

     cGGATCGTCATCGACCAATAATAAATGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGc                                                                                                                     <  1:117260/138‑1 (MQ=255)

              aTCGACCAATAATAAATGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGc                                                                                                                     >  1:1120326/1‑129 (MQ=255)

              aTCGACCAATAATAAATGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGc                                                                                                                     <  2:1120326/129‑1 (MQ=255)

              aTCGACCAATAATAAATGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCa                                                                                                            >  2:42540/1‑138 (MQ=255)

                    cAATAATAAATGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCg                                                                                                      >  1:297947/1‑138 (MQ=255)

                     aataatAAATGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCgg                                                                                                     <  1:1121171/138‑1 (MQ=255)

                      ataataAATGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGt                                                                                                    <  2:819793/138‑1 (MQ=255)

                        aataaATGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCa                                                                                                  >  2:1425367/1‑138 (MQ=255)

                        aataaATGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCa                                                                                                  >  1:355834/1‑138 (MQ=255)

                            aaTGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGtt                                                                                              <  2:1407713/138‑1 (MQ=255)

                              tGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGtttt                                                                                            >  1:1153559/1‑138 (MQ=255)

                                  cAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAg                                                                                        <  2:1153559/138‑1 (MQ=255)

                                  cAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAg                                                                                        >  1:96072/1‑138 (MQ=255)

                                   aGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTcc                                                                                          <  2:1635010/135‑1 (MQ=255)

                                   aGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTcc                                                                                          >  1:1635010/1‑135 (MQ=255)

                                   aGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGc                                                                                       >  1:1698571/1‑138 (MQ=255)

                                   aGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGc                                                                                       >  1:482878/1‑138 (MQ=255)

                                    ggTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCt                                                                                      >  2:121233/1‑138 (MQ=255)

                                    ggTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCt                                                                                      >  1:1534181/1‑138 (MQ=255)

                                     gTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCtt                                                                                     <  1:816648/138‑1 (MQ=255)

                                       ttATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGc                                                                                   >  2:1302103/1‑138 (MQ=255)

                                           ggCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGggt                                                                               <  2:297947/138‑1 (MQ=255)

                                                 tcaGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAg                                                                         >  1:1082193/1‑138 (MQ=255)

                                                 tcaGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAg                                                                         >  1:511871/1‑138 (MQ=255)

                                                 tcaGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAg                                                                         >  1:1819211/1‑138 (MQ=255)

                                                      aGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCa                                                                    <  2:482878/138‑1 (MQ=255)

                                                      aGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCa                                                                    <  1:280762/138‑1 (MQ=255)

                                                        tGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGt                                                                  <  1:1065692/138‑1 (MQ=255)

                                                        tGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGt                                                                  <  2:794123/138‑1 (MQ=255)

                                                          aCCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGG‑TTTCCAGCTTGCGGGTGGTGAGTTCCAGTtgc                                                               <  2:340733/138‑1 (MQ=255)

                                                              cATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCggg                                                                                <  1:1789007/118‑1 (MQ=255)

                                                              cATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCggg                                                                                >  2:1789007/1‑118 (MQ=255)

                                                                tGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGctgctg                                                          <  2:1762439/138‑1 (MQ=255)

                                                                  ggTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTa                                                        >  1:29064/1‑138 (MQ=255)

                                                                   gTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAg                                                       <  2:1274178/138‑1 (MQ=255)

                                                                   gTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAg                                                       >  2:808446/1‑138 (MQ=255)

                                                                      gATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAAc                                                    >  2:430440/1‑138 (MQ=255)

                                                                        tGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGt                                                  >  2:1317783/1‑138 (MQ=255)

                                                                        tGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGt                                                  >  2:811298/1‑138 (MQ=255)

                                                                             cgGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGt                                             >  2:352511/1‑138 (MQ=255)

                                                                              gggCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGtt                                            <  2:511871/138‑1 (MQ=255)

                                                                               ggCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTg                                           >  2:457613/1‑138 (MQ=255)

                                                                                 cTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCt                                         <  1:1813787/138‑1 (MQ=255)

                                                                                  ttttCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTg                                        <  1:811298/138‑1 (MQ=255)

                                                                                  ttttCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTg                                        <  1:1254935/138‑1 (MQ=255)

                                                                                  ttttCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTCGCTGCTGTAGAACGTGATGTTGCTg                                        <  2:1534181/138‑1 (MQ=255)

                                                                                      cACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTGgcgc                                    <  1:528131/138‑1 (MQ=255)

                                                                                            cGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTGGCGCAATGTa                              >  1:928767/1‑138 (MQ=255)

                                                                                                cggcgTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTGGCGCAATGTATCCa                          >  1:465257/1‑138 (MQ=255)

                                                                                                cggcgTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTGGCGCAATGTATCCa                          >  1:701847/1‑138 (MQ=255)

                                                                                                    gTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTGGCGCAATGTATCCAGCtc                      <  2:1398941/138‑1 (MQ=255)

                                                                                                    gTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTGGCGCAATGTATCCAGCtc                      <  2:908994/138‑1 (MQ=255)

                                                                                                    gTATCCGGCGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTGGCGCAATGTATCCAGCtc                      >  1:903884/1‑138 (MQ=255)

                                                                                                            cGAGAAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTGGCGCAATGTATCCAGCtcgctgtcgc              <  1:421696/138‑1 (MQ=255)

                                                                                                              agaAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTGGCGCAATGTATCCAGCtcgctgtcgctg            <  1:1344067/138‑1 (MQ=255)

                                                                                                              agaAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTGGCGCAATGTATCCAGCtcgctgtcgctg            <  1:42540/138‑1 (MQ=255)

                                                                                                               gaAATTTCCAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTGGCGCAATGTATCCAGCTCGCTGTCGCTgg           <  1:352511/138‑1 (MQ=255)

                                                                                                                      ccAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTGGCGCAATTTATCCAGCTCGCTGTCGCTGGActgctg    <  1:852406/138‑1 (MQ=255)

                                                                                                                      ccAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTGGCGCAATGTATCCAGCTCGCTGTCGCTGGActgctg    <  2:1698571/138‑1 (MQ=255)

                                                                                                                      ccAGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTGGCGCAATGTATCCAGCTCGCTGTCGCTGGActgctg    <  1:430440/138‑1 (MQ=255)

                                                                                                                        aGCCGGTTTGCGGGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTGGCGCAATGTATCCAGCTCGCTGTCGCTGGACTGCTGGa  <  2:96072/138‑1 (MQ=255)

AATCCCGGATCGTCATCGACCAATAATAAATGCGCAGGTTTATGGCTCATCAGGAGTGACCTCATGGGTGGATGGCGCGGGCTTTTCACTCTCGTGCGGCGTATCCGGCGAGAAATTTCCAGCCGGTTTGC‑GGGTCGAGAGCTGGCGTTCAATATCGGTCAGGTTTTCCAGCTTGCGGGTGGTGAGTTCCAGTTGCTGCTGTAGAACGTGATGTTGCTGGCGCAATGTATCCAGCTCGCTGTCGCTGGACTGCTGGA  >  NC_000913/2688754‑2689010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A