Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,690,033 T→C T356A (ACA→GCA)  glrK ← sensory histidine kinase GlrK

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,690,0330TC100.0% 337.7 / NA 93T356A (ACA→GCA) glrKsensory histidine kinase GlrK
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (46/47);  total (46/47)

GACATCAATATAAACCCGCGCACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGTTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCGCACTGTCCGCCTGTTTACGGTTGTAA  >  NC_000913/2689896‑2690169
                                                                                                                                         |                                                                                                                                        
gaCATCAATATAAACCCGCGCACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGctgctg                                                                                                                                        >  1:1116112/1‑140 (MQ=255)
   aTCAATATAAACCCGCGCACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCtt                                                                                                                                     >  1:708174/1‑140 (MQ=255)
   aTCAATATAAACCCGCGCACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCtt                                                                                                                                     >  1:130944/1‑140 (MQ=255)
     cAATATAAACCCGCGCACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTg                                                                                                                                   >  1:578512/1‑140 (MQ=255)
        tataAACCCGCGCACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTgaga                                                                                                                                >  1:959669/1‑140 (MQ=255)
        tataAACCCGCGCACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTgaga                                                                                                                                >  1:1100615/1‑140 (MQ=255)
             aCCCGCGCACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGAc                                                                                                                           <  2:829016/140‑1 (MQ=255)
             aCCCGCGCACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGAc                                                                                                                           >  1:860539/1‑140 (MQ=255)
               ccGCGCACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGt                                                                                                                         <  2:429037/140‑1 (MQ=255)
               ccGCGCACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGt                                                                                                                         <  2:291409/140‑1 (MQ=255)
                cgcgCACCATGTAAACTGCTGCTAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACg                                                                                                                          >  2:645155/1‑138 (MQ=255)
                cgcgCACCATGTAAACTGCTGCTAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACg                                                                                                                          <  1:645155/138‑1 (MQ=255)
                  cgcACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCgg                                                                                                                      >  2:577137/1‑140 (MQ=255)
                  cgcACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCgg                                                                                                                      >  2:570970/1‑140 (MQ=255)
                  cgcACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCgg                                                                                                                      >  2:123838/1‑140 (MQ=255)
                  cgcACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCgg                                                                                                                      >  1:145358/1‑140 (MQ=255)
                  cgcACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCgg                                                                                                                      >  1:378243/1‑140 (MQ=255)
                  cgcACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGACTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCgg                                                                                                                      >  2:963515/1‑140 (MQ=255)
                   gcACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGt                                                                                                                     <  2:1100615/140‑1 (MQ=255)
                   gcACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGt                                                                                                                     <  2:13540/140‑1 (MQ=255)
                    cACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTa                                                                                                                    <  1:577137/140‑1 (MQ=255)
                        aTGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGca                                                                                                                <  1:158656/140‑1 (MQ=255)
                        aTGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGca                                                                                                                <  2:803783/140‑1 (MQ=255)
                         tGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGcat                                                                                                               >  2:389232/1‑140 (MQ=255)
                                 gctgcGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGGATCATTTTAg                                                                                                       >  2:695733/1‑140 (MQ=255)
                                 gctgcGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAg                                                                                                       >  2:897919/1‑140 (MQ=255)
                                 gctgcGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAg                                                                                                       >  2:355612/1‑140 (MQ=255)
                                 gctgcGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAg                                                                                                       >  1:633872/1‑140 (MQ=255)
                                 gctgcGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAg                                                                                                       >  2:792649/1‑140 (MQ=255)
                                     cGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCg                                                                                                   <  1:222572/140‑1 (MQ=255)
                                       aaGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTg                                                                                                 >  1:313929/1‑140 (MQ=255)
                                       aaGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTg                                                                                                 >  1:966432/1‑140 (MQ=255)
                                           cAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCggg                                                                                             <  1:389232/140‑1 (MQ=255)
                                            aaaTGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGc                                                                                            <  1:897919/140‑1 (MQ=255)
                                            aaaTGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGc                                                                                            <  2:313929/140‑1 (MQ=255)
                                            aaaTGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGc                                                                                            <  2:966432/140‑1 (MQ=255)
                                            aaaTGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGc                                                                                            <  1:945840/140‑1 (MQ=255)
                                            aaaTGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGc                                                                                            <  2:959669/140‑1 (MQ=255)
                                                 ttACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCt                                                                                       >  1:156393/1‑140 (MQ=255)
                                                    ccGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATg                                                                                    >  2:623184/1‑140 (MQ=255)
                                                    ccGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATg                                                                                    >  1:370840/1‑140 (MQ=255)
                                                     cGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGa                                                                                   <  1:963515/140‑1 (MQ=255)
                                                       gATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGc                                                                                 <  1:570970/140‑1 (MQ=255)
                                                          tCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGa                                                                              <  2:464525/140‑1 (MQ=255)
                                                            aGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGaaa                                                                            <  1:623184/140‑1 (MQ=255)
                                                               cccGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCa                                                                         <  1:355612/140‑1 (MQ=255)
                                                               cccGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCa                                                                         <  2:156393/140‑1 (MQ=255)
                                                                 cGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACt                                                                       >  2:350065/1‑140 (MQ=255)
                                                                 cGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACt                                                                       <  2:145358/140‑1 (MQ=255)
                                                                    aGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGtc                                                                    <  2:370840/140‑1 (MQ=255)
                                                                    aGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGtc                                                                    <  2:130944/140‑1 (MQ=255)
                                                                      tGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGtctc                                                                  >  1:636062/1‑140 (MQ=255)
                                                                        cACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTg                                                                      <  1:507373/134‑1 (MQ=255)
                                                                        cACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTg                                                                      >  2:507373/1‑134 (MQ=255)
                                                                           cGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTccacca                                                             >  2:937285/1‑140 (MQ=255)
                                                                             cATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACt                                                                       <  1:528071/128‑1 (MQ=255)
                                                                             cATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACt                                                                       >  2:528071/1‑128 (MQ=255)
                                                                             cATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGc                                                           >  1:314925/1‑140 (MQ=255)
                                                                              aTTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCg                                                          >  1:1074851/1‑140 (MQ=255)
                                                                                tGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGt                                                        <  1:735498/140‑1 (MQ=255)
                                                                                   aGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCt                                                     <  2:633872/140‑1 (MQ=255)
                                                                                     tAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTaa                                                   >  2:587326/1‑140 (MQ=255)
                                                                                       aaGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACt                                                 >  2:596457/1‑140 (MQ=255)
                                                                                            tATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACa                                            <  2:180036/140‑1 (MQ=255)
                                                                                            tATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACa                                            >  1:593740/1‑140 (MQ=255)
                                                                                            tATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACa                                            <  2:658230/140‑1 (MQ=255)
                                                                                             aTCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTg                                                       >  2:343983/1‑128 (MQ=255)
                                                                                             aTCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTg                                                       <  1:343983/128‑1 (MQ=255)
                                                                                              tCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGc                                                           <  2:1117140/123‑1 (MQ=255)
                                                                                              tCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGc                                                           >  1:1117140/1‑123 (MQ=255)
                                                                                                    aCGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAg                                    <  2:578512/140‑1 (MQ=255)
                                                                                                    aCGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAg                                    >  1:736515/1‑140 (MQ=255)
                                                                                                    aCGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAg                                    <  1:1061262/140‑1 (MQ=255)
                                                                                                        tcatcaGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGAACGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTcc                                >  2:357554/1‑140 (MQ=255)
                                                                                                        tcatcaGCAGCATTGGCTCCACCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAg                                    >  2:549487/1‑136 (MQ=255)
                                                                                                        tcatcaGCAGCATTGGCTCCACCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAg                                    <  1:549487/136‑1 (MQ=255)
                                                                                                         catcaGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCa                               <  2:221211/140‑1 (MQ=255)
                                                                                                           tcaGCAGCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCAcc                             >  2:410592/1‑140 (MQ=255)
                                                                                                            cagcagCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCg                            <  2:1074851/140‑1 (MQ=255)
                                                                                                            cagcagCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCg                            <  1:762966/140‑1 (MQ=255)
                                                                                                            cagcagCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCg                            <  1:597281/140‑1 (MQ=255)
                                                                                                            cagcagCATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCg                            <  1:350065/140‑1 (MQ=255)
                                                                                                             agcagcATTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCGc                           >  2:936134/1‑140 (MQ=255)
                                                                                                                  caTTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCGCACTGt                      >  2:84816/1‑140 (MQ=255)
                                                                                                                  caTTGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCGCACTGt                      <  2:314925/140‑1 (MQ=255)
                                                                                                                    ttGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCg                            >  2:1073083/1‑132 (MQ=255)
                                                                                                                    ttGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCg                            <  1:1073083/132‑1 (MQ=255)
                                                                                                                    ttGGCTCCGCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCGCACTGTcc                    >  1:31491/1‑140 (MQ=255)
                                                                                                                            gCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCGCACTGTCCGCCTGttt            >  2:982272/1‑140 (MQ=255)
                                                                                                                            gCCAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCGCACTGTCCGCCTGttt            >  1:757421/1‑140 (MQ=255)
                                                                                                                             ccAGGCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCGCACTGTCCGCCTGTTTa           <  2:736515/140‑1 (MQ=255)
                                                                                                                                 gCAAGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCGCACTGTCCGCCTGTTTACGGt       <  2:530238/140‑1 (MQ=255)
                                                                                                                                   aaGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCGCACTGTCCGCCTGTTTACGGTTg     <  2:757421/140‑1 (MQ=255)
                                                                                                                                   aaGCTGCTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCGCACTGTCCGCCTGTTTACGGTTg     <  2:1116112/140‑1 (MQ=255)
                                                                                                                                      ctgctgCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCGCACTGTCCGCCTGTTTACGGTTGTaa  <  1:792649/140‑1 (MQ=255)
                                                                                                                                      ctgctgCTTTGAGAACGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCGCACTGTCCGCCTGTTTACGGTTGTaa  <  1:357554/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
GACATCAATATAAACCCGCGCACCATGTAAACTGCTGCGAAGGCAAATGTTACCGGATTCAGCCCCGTAGTGCACCGCATTGGAGTAAAGATTATCCAGTACGCTCATCAGCAGCATTGGCTCCGCCAGGCAAGCTGTTGCTTTGAGATCGACGTCGGTATGCATCATTTTAGCCCGTGCGGGCAGGCTATGAGCAGAAACCACTGTCTCCACCAGCGGTGCTAACTCAACATTCTCCAGTTCCACCGCACTGTCCGCCTGTTTACGGTTGTAA  >  NC_000913/2689896‑2690169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A