Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 120 93.5 3664254 88.3% 3235536 136.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,811,933 T→C S169S (AGT→AGC)  emrA → multidrug efflux pump membrane fusion protein EmrA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,811,9330TC100.0% 340.7 / NA 91S169S (AGT→AGC) emrAmultidrug efflux pump membrane fusion protein EmrA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (47/44);  total (47/44)

GCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGTGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTAACGCCTGGCTGGCGCTGG  >  NC_000913/2811801‑2812066
                                                                                                                                    |                                                                                                                                     
gCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCa                                                                                                                                  <  2:350035/138‑1 (MQ=255)
gCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCa                                                                                                                                  <  1:129002/138‑1 (MQ=255)
gCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCa                                                                                                                                  <  1:1380754/138‑1 (MQ=255)
gCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCa                                                                                                                                  <  2:1250331/138‑1 (MQ=255)
  aGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAgg                                                                                                                                >  2:1542673/1‑138 (MQ=255)
       aaTATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCaa                                                                                                                           >  1:1630908/1‑138 (MQ=255)
        atatTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAAc                                                                                                                          >  1:921095/1‑138 (MQ=255)
         tatTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACt                                                                                                                         >  1:1766/1‑138 (MQ=255)
          atTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTg                                                                                                                        >  1:528573/1‑138 (MQ=255)
          atTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTg                                                                                                                        >  1:858003/1‑138 (MQ=255)
          atTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTg                                                                                                                        <  2:1766/138‑1 (MQ=255)
             gAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGAc                                                                                                                     <  1:795858/138‑1 (MQ=255)
                  gCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTcgc                                                                                                                <  1:475084/138‑1 (MQ=255)
                  gCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTcgc                                                                                                                <  1:825942/138‑1 (MQ=255)
                  gCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTcgc                                                                                                                >  1:1691206/1‑138 (MQ=255)
                  gCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTcgc                                                                                                                <  2:1797086/138‑1 (MQ=255)
                  gCAAAAAAGCGCCCTCGCGAAAGCAAAAAGGGACTACAGCCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTcgc                                                                                                                <  2:419669/138‑1 (MQ=255)
                  gCAAAAAACCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTcgc                                                                                                                <  2:825515/138‑1 (MQ=255)
                   cAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCa                                                                                                                                  <  1:487848/119‑1 (MQ=255)
                   cAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCa                                                                                                                                  >  2:487848/1‑119 (MQ=255)
                    aGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGa                                                                                                              <  1:862268/138‑1 (MQ=255)
                     gAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGAt                                                                                                             >  2:1158733/1‑138 (MQ=255)
                     gAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGAt                                                                                                             >  1:541608/1‑138 (MQ=255)
                     gAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGAt                                                                                                             >  1:282278/1‑138 (MQ=255)
                            cccccCGCAAAAGCAAAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTcaacaa                                                                                                      <  1:913767/137‑1 (MQ=255)
                               cTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAacaatac                                                                                                   >  2:362174/1‑138 (MQ=255)
                               cTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAacaatac                                                                                                   >  1:1089502/1‑138 (MQ=255)
                                    gAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCC‑ACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGcc                                                                                             >  2:1461122/1‑138 (MQ=255)
                                      aaGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCa                                                                                            <  1:1140417/138‑1 (MQ=255)
                                      aaGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCa                                                                                            <  1:397735/138‑1 (MQ=255)
                                        gCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAAt                                                                                          >  2:1072338/1‑138 (MQ=255)
                                          acaAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCa                                                                                        <  1:1609361/138‑1 (MQ=255)
                                             aaGCGCCTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGc                                                                                     <  1:1384682/138‑1 (MQ=255)
                                             aaGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGc                                                                                     <  1:362174/138‑1 (MQ=255)
                                              aGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCg                                                                                    <  1:527560/138‑1 (MQ=255)
                                              aGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCg                                                                                    <  1:1080735/138‑1 (MQ=255)
                                                cGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCgat                                                                                  >  1:1573060/1‑138 (MQ=255)
                                                    tACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGAtt                                                                              <  2:921095/138‑1 (MQ=255)
                                                      cAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATT‑GTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTg                                                                           >  2:1626000/1‑138 (MQ=255)
                                                         ccgccgTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTggg                                                                         <  1:1072338/138‑1 (MQ=255)
                                                         ccgccgTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTggg                                                                         <  2:212218/138‑1 (MQ=255)
                                                          cgccgTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCgat                                                                                  >  1:1389634/1‑128 (MQ=255)
                                                          cgccgTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCgat                                                                                  <  2:1389634/128‑1 (MQ=255)
                                                           gccgTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGa                                                                       <  1:1437970/138‑1 (MQ=255)
                                                           gccgTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGa                                                                       <  2:1089502/138‑1 (MQ=255)
                                                              gtgtGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTa                                                                    >  1:349022/1‑138 (MQ=255)
                                                              gtgtGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTa                                                                    >  1:1413597/1‑138 (MQ=255)
                                                               tgtgCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTaa                                                                   >  1:619932/1‑138 (MQ=255)
                                                               tgtgCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTaa                                                                   >  1:1190677/1‑138 (MQ=255)
                                                                gtgCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTaaa                                                                  >  1:734193/1‑138 (MQ=255)
                                                                 tgCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAAc                                                                 >  2:870534/1‑138 (MQ=255)
                                                                 tgCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAAc                                                                 <  2:282278/138‑1 (MQ=255)
                                                                 tgCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAAc                                                                 <  2:1630908/138‑1 (MQ=255)
                                                                    cGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTgg                                                              <  1:781185/138‑1 (MQ=255)
                                                                     gCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGa                                                             >  1:1198386/1‑138 (MQ=255)
                                                                          gCAATGCC‑ACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATca                                                       <  1:1461122/138‑1 (MQ=255)
                                                                           cAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATca                                                       >  2:1230982/1‑138 (MQ=255)
                                                                            aaTGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATcag                                                      <  1:1800150/138‑1 (MQ=255)
                                                                            aaTGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATcag                                                      <  1:1363668/138‑1 (MQ=255)
                                                                                ccAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATcagccag                                                  >  2:907694/1‑138 (MQ=255)
                                                                                ccAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATcagccag                                                  >  1:1139510/1‑138 (MQ=255)
                                                                                ccAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATcagccag                                                  >  1:1291425/1‑138 (MQ=255)
                                                                                     cTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATca                                                       >  1:306082/1‑128 (MQ=255)
                                                                                     cTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATca                                                       <  2:306082/128‑1 (MQ=255)
                                                                                        aTTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCaa                                          >  1:420481/1‑138 (MQ=255)
                                                                                           ggTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAg                                       <  2:1413597/138‑1 (MQ=255)
                                                                                                cgAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGc                                  >  2:155670/1‑138 (MQ=255)
                                                                                                 gAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGcc                                 >  1:968906/1‑138 (MQ=255)
                                                                                                 gAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGcc                                 >  2:112788/1‑138 (MQ=255)
                                                                                                 gAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGcc                                 >  2:1362927/1‑138 (MQ=255)
                                                                                                 gAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGcc                                 >  2:1207250/1‑138 (MQ=255)
                                                                                                 gAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGcc                                 >  1:326715/1‑138 (MQ=255)
                                                                                                     agCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCg                             <  1:112788/138‑1 (MQ=255)
                                                                                                      gCTGCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGa                            <  2:349022/138‑1 (MQ=255)
                                                                                                         gCAACACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGt                         >  2:590154/1‑138 (MQ=255)
                                                                                                           aaCACGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTAc                       <  2:1198386/138‑1 (MQ=255)
                                                                                                              acGCCCGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTa                    >  1:1807206/1‑138 (MQ=255)
                                                                                                                 cccGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTAACg                 >  2:1804836/1‑138 (MQ=255)
                                                                                                                 cccGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTAACg                 >  1:1460144/1‑138 (MQ=255)
                                                                                                                 cccGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTAACg                 >  2:1561351/1‑138 (MQ=255)
                                                                                                                 cccGCGACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTAACg                 >  2:474081/1‑138 (MQ=255)
                                                                                                                   cgcgACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTAACGcc               >  1:296656/1‑138 (MQ=255)
                                                                                                                   cgcgACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTAACGcc               >  1:1082050/1‑138 (MQ=255)
                                                                                                                    gcgACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTAACGCct              >  2:786526/1‑138 (MQ=255)
                                                                                                                     cgACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTAACGCctg             <  2:42991/138‑1 (MQ=255)
                                                                                                                      gACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTAACGCctg             <  2:1552021/137‑1 (MQ=255)
                                                                                                                      gACGCCGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTAACGCctg             >  1:1552021/1‑137 (MQ=255)
                                                                                                                          ccGTCACCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTAACGCctggctgg        <  2:1190677/138‑1 (MQ=255)
                                                                                                                               aCCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTAACGCCTGGCTGGCGCTg   <  1:1561351/138‑1 (MQ=255)
                                                                                                                               aCCAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTAACGCCTGGCTGGCGCTg   <  1:907694/138‑1 (MQ=255)
                                                                                                                                ccAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACGATGCCAATCAGTCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTAACGCCTGGCTGGCGCTgg  <  2:1139510/138‑1 (MQ=255)
                                                                                                                                ccAGCGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTAACGCCTGGCTGGCGCTgg  <  2:1460054/138‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                     
GCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGTGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCAATCAGGCGATGATTCTGGGGACTAAACTGGAAGATCAGCCAGCCGTGCAACAGGCTGCCACCGAAGTACGTAACGCCTGGCTGGCGCTGG  >  NC_000913/2811801‑2812066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A