Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 120 93.5 3664254 88.3% 3235536 136.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,008,079 G→A T190T (ACG→ACA)  ygeX → 2,3‑diaminopropionate ammonia‑lyase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,008,0790GA100.0% 258.8 / NA 73T190T (ACG→ACA) ygeX2,3‑diaminopropionate ammonia‑lyase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (41/32);  total (41/32)

ACGCGTTGACGCCATTCTGAACCTCGGTGCCGAGTGCATCGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAG  >  NC_000913/3007956‑3008212
                                                                                                                           |                                                                                                                                     
aCGCGTTGACGCCATTCTGAACCTCGGTGCCGAGTGCATCGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTa                                                                                                                         >  2:1205293/1‑138 (MQ=255)
   cgTTGACGCCATTCTGAACCTCGGTGCCGAGTGCATCGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTacac                                                                                                                      >  2:1026811/1‑138 (MQ=255)
     ttGACGCCATTCTGAACCTCGGTGCCGAGTGCATCGTCACGGATATGAACTATGACGATACCGTTCGCC‑GACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTacac                                                                                                                      >  2:1411905/1‑135 (MQ=255)
     ttGACGCCATTCTGAACCTCGGTGCCGAGTGCATCGTCACGGATATGAACTATGACGATACCGTTCGCC‑GACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTacac                                                                                                                      <  1:1411905/135‑1 (MQ=255)
        aCGCCATTCTGAACCTCGGTGCCGAGTGCATCGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCaaaa                                                                                                                 <  1:1007604/138‑1 (MQ=255)
        aCGCCATTCTGAACCTCGGTGCCGAGTGCATCGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCaaaa                                                                                                                 <  2:1272747/138‑1 (MQ=255)
        aCGCCATTCTGAACCTCGGTGCCGAGTGCATCGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCaaaa                                                                                                                 <  1:406821/138‑1 (MQ=255)
        aCGCCATTCTGAACCTCGGTGCCGAGTGCATCGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGACTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCaaaa                                                                                                                 <  2:628860/138‑1 (MQ=255)
                          gTGCCGAGTGCATCGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGc                                                                                               >  1:377207/1‑138 (MQ=255)
                          gTGCCGAGTGCATCGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGc                                                                                               >  2:1175788/1‑138 (MQ=255)
                            gCCGAGTGCATCGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCaa                                                                                             >  1:1619198/1‑138 (MQ=255)
                                  tGCATCGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGTGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTAc                                                                                       >  2:1689191/1‑138 (MQ=255)
                                  tGCATCGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTAc                                                                                       <  2:1335606/138‑1 (MQ=255)
                                  tGCATCGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCT‑GGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACg                                                                                      <  2:498105/138‑1 (MQ=255)
                                   gCATCGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACg                                                                                      <  1:660759/138‑1 (MQ=255)
                                   gCATCGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACg                                                                                      <  2:280777/138‑1 (MQ=255)
                                    cATCGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGCGGGACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACga                                                                                     >  2:1388224/1‑137 (MQ=255)
                                       cGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAAc                                                                                  >  2:1806054/1‑138 (MQ=255)
                                       cGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAAc                                                                                  >  2:1804516/1‑138 (MQ=255)
                                         tCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTa                                                                                        <  2:386635/130‑1 (MQ=255)
                                         tCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTa                                                                                        >  1:386635/1‑130 (MQ=255)
                                                 atGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGAt                                                                        >  1:108902/1‑138 (MQ=255)
                                                  tGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATg                                                                       >  2:260654/1‑138 (MQ=255)
                                                      cTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGc                                                                   <  2:282864/138‑1 (MQ=255)
                                                      cTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGc                                                                   <  1:328671/138‑1 (MQ=255)
                                                           gtcaTACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGc                                                                   <  1:100146/130‑1 (MQ=255)
                                                           gtcaTACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGc                                                                   >  2:100146/4‑133 (MQ=255)
                                                           aCGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCg                                                              >  2:1201086/1‑138 (MQ=255)
                                                           aCGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCg                                                              <  1:1175788/138‑1 (MQ=255)
                                                             gATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAg                                                            >  2:502574/1‑138 (MQ=255)
                                                             gATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAg                                                            >  2:845026/1‑138 (MQ=255)
                                                             gATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAg                                                            <  1:1806054/138‑1 (MQ=255)
                                                             gATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAg                                                            >  1:326954/1‑138 (MQ=255)
                                                                aCCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACGCCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCaa                                                         >  2:831654/1‑138 (MQ=255)
                                                                aCCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGTGCaa                                                         >  2:322540/1‑138 (MQ=255)
                                                                aCCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCaa                                                         >  2:1215672/1‑138 (MQ=255)
                                                                aCCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCaa                                                         >  1:33753/1‑138 (MQ=255)
                                                                 ccGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCaaa                                                        <  1:502574/138‑1 (MQ=255)
                                                                 ccGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCaaa                                                        >  2:658802/1‑138 (MQ=255)
                                                                  cGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGGGGTACAGGACACAGCATGGGAAGGGTACACCAAAATCCTAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAAt                                                       >  2:612226/1‑138 (MQ=255)
                                                                   gTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATg                                                      <  1:260654/138‑1 (MQ=255)
                                                                   gTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATg                                                      >  2:1427256/1‑138 (MQ=255)
                                                                     tCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCg                                                    >  1:1044983/1‑138 (MQ=255)
                                                                     tCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCg                                                    >  2:1758952/1‑138 (MQ=255)
                                                                      cGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGt                                                   >  1:111589/1‑138 (MQ=255)
                                                                      cGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGt                                                   >  1:1736318/1‑138 (MQ=255)
                                                                       gCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTg                                                  <  1:173634/138‑1 (MQ=255)
                                                                        ccTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGa                                                 >  2:1018512/1‑138 (MQ=255)
                                                                        ccTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGa                                                 <  2:1044983/138‑1 (MQ=255)
                                                                              cATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTg                                                  >  1:278920/1‑131 (MQ=255)
                                                                              cATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTg                                                  <  2:278920/131‑1 (MQ=255)
                                                                              cATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATggg                                           >  1:37053/1‑138 (MQ=255)
                                                                               aTGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGc                                          <  2:1736318/138‑1 (MQ=255)
                                                                                tGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCg                                         <  1:205924/138‑1 (MQ=255)
                                                                                     cacGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAAcc                                    <  1:1826025/138‑1 (MQ=255)
                                                                                        gcgcAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCg                                 >  2:289404/1‑138 (MQ=255)
                                                                                         cgcAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGa                                >  2:1641667/1‑138 (MQ=255)
                                                                                         cgcAGCAGCACGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGa                                <  1:1741506/138‑1 (MQ=255)
                                                                                          gcagcagcaCGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGAc                               <  1:1689191/138‑1 (MQ=255)
                                                                                            agcagcaCGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGc                             >  2:1358652/1‑138 (MQ=255)
                                                                                            agcagcaCGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGc                             >  2:1234449/1‑138 (MQ=255)
                                                                                                   cGGCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTct                      >  1:1625411/1‑138 (MQ=255)
                                                                                                     gCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTctgc                    >  1:722531/1‑138 (MQ=255)
                                                                                                     gCTGGGAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTctgc                    >  2:1558173/1‑138 (MQ=255)
                                                                                                          gAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCaa               <  1:1201086/138‑1 (MQ=255)
                                                                                                          gAAGTGGTACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCaa               >  1:846772/1‑138 (MQ=255)
                                                                                                                 tACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGgtg        <  2:33753/138‑1 (MQ=255)
                                                                                                                 tACAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGgtg        <  1:1215672/138‑1 (MQ=255)
                                                                                                                  aCAGGACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGgtgt       >  2:476430/1‑138 (MQ=255)
                                                                                                                     ggACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCgg    <  1:1427256/138‑1 (MQ=255)
                                                                                                                     ggACACAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCgg    <  2:1281437/138‑1 (MQ=255)
                                                                                                                       acacAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAg  <  1:1758952/138‑1 (MQ=255)
                                                                                                                       acacAGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAg  <  1:1804516/138‑1 (MQ=255)
                                                                                                                           |                                                                                                                                     
ACGCGTTGACGCCATTCTGAACCTCGGTGCCGAGTGCATCGTCACGGATATGAACTATGACGATACCGTTCGCCTGACCATGCAACACGCGCAGCAGCACGGCTGGGAAGTGGTACAGGACACGGCATGGGAAGGTTACACCAAAATCCCAACCTGGATCATGCAAGGCTACGCAACCCTGGCAGATGAAGCCGTCGAGCAAATGCGTGAAATGGGCGTAACCCCGACGCACGTTCTGCTGCAAGCCGGTGTCGGAG  >  NC_000913/3007956‑3008212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A