Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 120 93.5 3664254 88.3% 3235536 136.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,513,894 (T)6→7 coding (496/759 nt) gph ← phosphoglycolate phosphatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,513,8881.T97.3% 387.5 / 1.7 111coding (502/759 nt)gphphosphoglycolate phosphatase
Reads supporting (aligned to +/- strand):  ref base . (3/0);  new base T (54/54);  total (57/54)
Fisher's exact test for biased strand distribution p-value = 2.44e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 123 total aligned reads displayed.

CGTAGGTTAAGCCAACTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GG‑TTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCGGCAGGCCTTTAG  >  NC_000913/3513753‑3514016
                                                                                                                                         |                                                                                                                                
cGTAGGTTAAGCCAACTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GG‑tt                                                                                                                                >  1:213490/1‑138 (MQ=255)
    ggTTAAGCCAACTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GG‑tttttt                                                                                                                            >  1:667485/1‑138 (MQ=255)
    ggTTAAGCCAACTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GG‑tttttt                                                                                                                            >  2:211557/1‑138 (MQ=255)
     gTTAAGCCAACTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GG‑ttttttt                                                                                                                           >  1:1500539/1‑137 (MQ=255)
           ccAACTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTttttgttttg                                                                                                                      >  2:242109/1‑138 (MQ=255)
           ccAACTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTttttgttttg                                                                                                                      >  2:572972/1‑138 (MQ=255)
           ccAACTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTttttgttttg                                                                                                                      >  1:237608/1‑138 (MQ=255)
           ccAACTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTttttgttttg                                                                                                                      >  2:455715/1‑138 (MQ=255)
           ccAACTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTttttgtttt                                                                                                                       >  1:1015426/1‑137 (MQ=255)
           ccAACTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTttttgtttt                                                                                                                       <  2:1015426/137‑1 (MQ=255)
            cAACTGATGTGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGCCCGGATGC‑GGTTTttttgttttac                                                                                                                     >  2:1243781/1‑136 (MQ=255)
            cAACTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGTGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGc                                                                                                                     >  1:986896/1‑138 (MQ=255)
            cAACTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGc                                                                                                                     >  1:130559/1‑138 (MQ=255)
            cAACTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGc                                                                                                                     <  2:192615/138‑1 (MQ=255)
            cAACTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGc                                                                                                                     <  1:785808/138‑1 (MQ=255)
             aaCTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGca                                                                                                                    <  1:526215/138‑1 (MQ=255)
             aaCTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGca                                                                                                                    <  2:1500539/138‑1 (MQ=255)
                tGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCAcat                                                                                                                 >  1:881386/1‑138 (MQ=255)
                tGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCAcat                                                                                                                 >  1:1607758/1‑138 (MQ=255)
                 gATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCAcatc                                                                                                                <  1:7271/138‑1 (MQ=255)
                 gATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCAcatc                                                                                                                >  2:209012/1‑138 (MQ=255)
                   tGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCAcatcat                                                                                                              <  2:1462712/138‑1 (MQ=255)
                   tGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCAcatcat                                                                                                              <  1:1585006/138‑1 (MQ=255)
                    gggCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACatcatc                                                                                                             <  2:600346/138‑1 (MQ=255)
                      gCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACatcatc                                                                                                             <  1:1668396/136‑1 (MQ=255)
                      gCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACatcatc                                                                                                             <  1:583773/136‑1 (MQ=255)
                      gCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACatcatc                                                                                                             >  2:583773/1‑136 (MQ=255)
                       cAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATcacc                                                                                                          >  2:786270/1‑138 (MQ=255)
                       cAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATcacc                                                                                                          >  1:1298314/1‑138 (MQ=255)
                       cAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATcacc                                                                                                          >  2:1827753/1‑138 (MQ=255)
                        aaCCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATcacca                                                                                                         <  2:130559/138‑1 (MQ=255)
                            tGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTttttgtttt                                                                                                                       >  2:842400/1‑120 (MQ=255)
                            tGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTttttgtttt                                                                                                                       <  1:842400/120‑1 (MQ=255)
                            tGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCaa                                                                                                     >  2:607767/1‑138 (MQ=255)
                             gCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAAt                                                                                                    <  2:495989/138‑1 (MQ=255)
                             gCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAAt                                                                                                    <  1:1435776/138‑1 (MQ=255)
                              ccGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCAcatcat                                                                                                              >  2:370525/1‑127 (MQ=255)
                              ccGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCAcatcat                                                                                                              <  1:370525/127‑1 (MQ=255)
                                gCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATcac                                                                                                 <  1:1586085/138‑1 (MQ=255)
                                   tttGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATcaccac                                                                                              <  1:679093/138‑1 (MQ=255)
                                       ccgccTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTg                                                                                          <  1:1827753/138‑1 (MQ=255)
                                       ccgccTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTg                                                                                          <  1:786270/138‑1 (MQ=255)
                                              aaTATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTAtt                                                                                   <  1:455715/138‑1 (MQ=255)
                                               atatCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTAttt                                                                                  <  2:1446552/138‑1 (MQ=255)
                                                tatCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTg                                                                                 <  1:242109/138‑1 (MQ=255)
                                                 atCATTGCGTGAGTCGCGGACAAACAGCATCTGTTGTGGGGCGATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTTCGGATGC‑GGTTTTTTTGTTTGGCACATCATCACCGGCGATCCGCCCGCAGAAGTaagggg                                                                                <  2:237607/138‑6 (MQ=255)
                                                 atCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTgg                                                                                <  1:666044/138‑1 (MQ=255)
                                                 atCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTgg                                                                                <  2:1783185/138‑1 (MQ=255)
                                                 atCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTgg                                                                                <  1:572972/138‑1 (MQ=255)
                                                 atCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTgg                                                                                <  2:1805067/138‑1 (MQ=255)
                                                 atCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTgg                                                                                <  1:326956/138‑1 (MQ=255)
                                                 atCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTgg                                                                                <  1:92226/138‑1 (MQ=255)
                                                       gCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCg                                                                              >  1:1145122/1‑134 (MQ=255)
                                                       gCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCg                                                                              <  2:1145122/134‑1 (MQ=255)
                                                       gCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGatat                                                                          <  1:1478757/138‑1 (MQ=255)
                                                          tGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGc                                                                               >  1:1064513/1‑130 (MQ=255)
                                                          tGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGc                                                                               <  2:215411/130‑1 (MQ=255)
                                                          tGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGc                                                                               <  2:1064513/130‑1 (MQ=255)
                                                          tGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTa                                                                       >  2:1246534/1‑138 (MQ=255)
                                                            aGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GG‑TTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAgg                                                                    >  1:783424/1‑138 (MQ=255)
                                                              tCGCCGATAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGc                                                                   >  1:846769/1‑138 (MQ=255)
                                                               cGCCGACAAACAGCATCTGTTGTGGGGCTATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCt                                                                  >  1:594073/1‑138 (MQ=255)
                                                                              tCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGcgcg                                                   >  1:1066438/1‑138 (MQ=255)
                                                                                    gtgGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAAc                                             >  2:351029/1‑138 (MQ=255)
                                                                                      ggggCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GG‑TTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGCACCGc                                          <  2:783424/138‑1 (MQ=255)
                                                                                       gggCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGc                                          <  2:58849/138‑1 (MQ=255)
                                                                                         gCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGt                                        >  1:1192334/1‑138 (MQ=255)
                                                                                          cAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAgcg                                                        >  1:1518929/1‑121 (MQ=255)
                                                                                          cAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAgcg                                                        <  2:1518929/121‑1 (MQ=255)
                                                                                           aaTTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCg                                      >  2:1157784/1‑138 (MQ=255)
                                                                                           aaTTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCg                                      <  2:126461/138‑1 (MQ=255)
                                                                                              tCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGtt                                   >  1:495111/1‑138 (MQ=255)
                                                                                              tCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGtt                                   >  1:1249678/1‑138 (MQ=255)
                                                                                              tCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGtt                                   >  2:327906/1‑138 (MQ=255)
                                                                                              tCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATATAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGtt                                   >  2:436045/1‑138 (MQ=255)
                                                                                                 cATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTttgt                                <  2:667485/138‑1 (MQ=255)
                                                                                                    ccGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTgg                             >  1:1350769/1‑138 (MQ=255)
                                                                                                       cTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGa                          <  2:1249678/138‑1 (MQ=255)
                                                                                                         cAGCCACCAGTAACAGCGGGTCCGGATGCGGG‑TTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGAGAcc                        >  2:1229250/1‑138 (MQ=255)
                                                                                                         cAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGAcc                        >  1:945893/1‑138 (MQ=255)
                                                                                                         cAGCCACCAGTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGAcc                        >  1:204063/1‑138 (MQ=255)
                                                                                                                  gTAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGc               <  2:1192334/138‑1 (MQ=255)
                                                                                                                   tAACAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCg              <  1:1132963/138‑1 (MQ=255)
                                                                                                                    aaCAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCgg             <  2:846769/138‑1 (MQ=255)
                                                                                                                    aaCAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCgg             <  2:881386/138‑1 (MQ=255)
                                                                                                                    aaCAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCgg             <  1:1308834/138‑1 (MQ=255)
                                                                                                                    aaCAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCgg             <  2:39428/138‑1 (MQ=255)
                                                                                                                    aaCAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCgg             <  1:1815884/138‑1 (MQ=255)
                                                                                                                      cAGCGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCGGCa           >  1:1551273/1‑138 (MQ=255)
                                                                                                                        gCGGGTCCGGATGC‑GG‑TTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCGGCAGGc        >  2:807484/1‑138 (MQ=255)
                                                                                                                         cGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCGGCAGGc        <  1:1610911/138‑1 (MQ=255)
                                                                                                                         cGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCGGCAGGc        <  1:1157784/138‑1 (MQ=255)
                                                                                                                         cGGGTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCGGCAGGc        <  2:204063/138‑1 (MQ=255)
                                                                                                                            gTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCa                       >  2:543394/1‑120 (MQ=255)
                                                                                                                            gTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCa                       <  1:543394/120‑1 (MQ=255)
                                                                                                                            gTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCgg             <  1:1081675/130‑1 (MQ=255)
                                                                                                                            gTCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCgg             >  2:1081675/1‑130 (MQ=255)
                                                                                                                             tCCGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCGGCAGGCCttt    >  1:712091/1‑138 (MQ=255)
                                                                                                                               cGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCGGCAGGCCTTTAg  >  1:457567/1‑138 (MQ=255)
                                                                                                                               cGGATGC‑GGTTTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCGGCAGGCCTTTAg  >  1:492236/1‑138 (MQ=255)
                                                                                                                                         |                                                                                                                                
CGTAGGTTAAGCCAACTGATGGGCAACCTGCCGCTTTTGCCGCCTGAATATCATTGCGTGAGTCGCCGACAAACAGCATCTGTTGTGGGGCAATTCCCATCCGCTCAGCCACCAGTAACAGCGGGTCCGGATGC‑GG‑TTTTTTGTTTTGCACATCATCACCACCAATCACCACGCTGAAGTATTTGGCGATATCTAAGGCTTCGAGCAGCGGCGCGACGAACGGCGTCGGTTTGTTGGTGACCAGGCCTAGCGGCAGGCCTTTAG  >  NC_000913/3513753‑3514016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A