Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 120 93.5 3664254 88.3% 3235536 136.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,576,957 C→T V35V (GTG→GTA)  gntU ← low‑affinity gluconate transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,576,9570CT100.0% 256.0 / NA 72V35V (GTG→GTA) gntUlow‑affinity gluconate transporter
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (29/43);  total (29/43)

AGATCTTGCCAAACATAGCTCCCAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGACACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAA  >  NC_000913/3576827‑3577090
                                                                                                                                  |                                                                                                                                     
aGATCTTGCCAAACATAGCTCCCAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCTTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATAccacca                                                                                                                                <  1:170979/138‑1 (MQ=255)
aGATCTTGCCAAACATAGCTCCCAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATAccacca                                                                                                                                <  2:461261/138‑1 (MQ=255)
aGATCTTGCCAAACATAGCTCCCAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATAccacca                                                                                                                                <  1:427638/138‑1 (MQ=255)
aGATCTTGCCAAACATAGCTCCCAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATAccacca                                                                                                                                <  1:130517/138‑1 (MQ=255)
  aTCTTGCCAAACATAGCTCCCAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCAtt                                                                                                                              >  1:845940/1‑138 (MQ=255)
        ccAAACATAGCTCCCAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATAccacca                                                                                                                                >  2:1705706/1‑130 (MQ=255)
        ccAAACATAGCTCCCAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATAccacca                                                                                                                                <  1:1705706/130‑1 (MQ=255)
        ccAAACATAGCTCCCAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGcc                                                                                                                        >  2:1723320/1‑138 (MQ=255)
         cAAACATAGCTCCCAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCa                                                                                                                       <  2:464317/138‑1 (MQ=255)
          aaaCATAGCTCCCAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAg                                                                                                                      <  1:1373374/138‑1 (MQ=255)
           aaCATAGCTCCCAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAgg                                                                                                                     <  2:15652/138‑1 (MQ=255)
              aTAGCTCCCAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGaaa                                                                                                                  <  2:845940/138‑1 (MQ=255)
              aTAGCTCCCAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGaaa                                                                                                                  >  1:268404/1‑138 (MQ=255)
                   tCCCAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTg                                                                                                             >  2:765518/1‑138 (MQ=255)
                    cccAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGc                                                                                                            >  1:244430/1‑138 (MQ=255)
                    cccAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGc                                                                                                            >  2:566056/1‑138 (MQ=255)
                      cAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCAt                                                                                                          <  2:1291391/138‑1 (MQ=255)
                         ggCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATAcg                                                                                                       >  2:1429411/1‑138 (MQ=255)
                            gACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACgcgc                                                                                                    >  1:859234/1‑138 (MQ=255)
                               aaCCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCtt                                                                                                 <  1:1441909/138‑1 (MQ=255)
                               aaCCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCtt                                                                                                 >  2:156551/1‑138 (MQ=255)
                               aaCCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCtt                                                                                                 >  1:697748/1‑138 (MQ=255)
                                accaccGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTc                                                                                                >  2:927748/1‑138 (MQ=255)
                                             aGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAAca                                                                                   <  1:641929/138‑1 (MQ=255)
                                             aGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAAca                                                                                   <  2:170403/138‑1 (MQ=255)
                                             aGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAAca                                                                                   <  1:1261480/138‑1 (MQ=255)
                                                 gAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAAcagcag                                                                               >  1:165544/1‑138 (MQ=255)
                                                  aGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAAcagcagc                                                                              <  1:765518/138‑1 (MQ=255)
                                                  aGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAAcagcagc                                                                              <  2:1693992/138‑1 (MQ=255)
                                                      tGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTa                                                                          <  1:245232/138‑1 (MQ=255)
                                                       gCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTaa                                                                         <  2:165544/138‑1 (MQ=255)
                                                        ccTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTaaa                                                                        <  1:1429411/138‑1 (MQ=255)
                                                         cTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTaaaa                                                                       <  2:697748/138‑1 (MQ=255)
                                                         cTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTaaaa                                                                       <  2:663164/138‑1 (MQ=255)
                                                         cTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTaaaa                                                                       >  1:1577956/1‑138 (MQ=255)
                                                         cTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATA‑‑CGCCTTCATGACTAAAAACAGCAGCAGTAAAACa                                                                     <  2:268404/138‑1 (MQ=255)
                                                          tCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAAc                                                                      >  1:1253738/1‑138 (MQ=255)
                                                          tCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAAc                                                                      >  1:135347/1‑138 (MQ=255)
                                                            ccATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAg                                                                    >  2:1059598/1‑138 (MQ=255)
                                                                cccTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGAccc                                                                >  2:532534/1‑138 (MQ=255)
                                                                  cTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTaaaa                                                                       <  1:1427203/129‑1 (MQ=255)
                                                                  cTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTaaaa                                                                       >  2:1427203/1‑129 (MQ=255)
                                                                     tttCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTActg                                                           >  2:206149/1‑138 (MQ=255)
                                                                       tCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTActgct                                                         <  2:1218492/138‑1 (MQ=255)
                                                                             gtcgCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTaaa                                                   <  2:135347/138‑1 (MQ=255)
                                                                             gtcgCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTaaa                                                   >  2:295820/1‑138 (MQ=255)
                                                                             gtcgCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTaaa                                                   <  2:1253738/138‑1 (MQ=255)
                                                                             gtcgCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTaaa                                                   <  2:1003135/138‑1 (MQ=255)
                                                                             gtcgCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTaaa                                                   <  1:813449/138‑1 (MQ=255)
                                                                             gtcgCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTaaa                                                   <  2:84607/138‑1 (MQ=255)
                                                                             gtcgCTGCGATTTTATCAAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCTTACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTaaa                                                   >  1:1494481/1‑138 (MQ=255)
                                                                              tcgCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTaaaa                                                  <  2:755539/138‑1 (MQ=255)
                                                                                  tGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCTGTAAAACAGACCCTACTGCTGTTAAAACAAg                                              <  1:1504952/138‑1 (MQ=255)
                                                                                  tGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAg                                              <  2:244430/138‑1 (MQ=255)
                                                                                  tGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAg                                              <  1:1059598/138‑1 (MQ=255)
                                                                                   gCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGc                                             >  2:1303665/1‑138 (MQ=255)
                                                                                        tttATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTaa                                        <  1:1723320/138‑1 (MQ=255)
                                                                                            tCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTa                                    <  1:1028369/138‑1 (MQ=255)
                                                                                            tCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTa                                    <  1:566056/138‑1 (MQ=255)
                                                                                                   gCATACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCacta                             >  1:625430/1‑138 (MQ=255)
                                                                                                      tACCAGAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACtt                          <  2:625430/138‑1 (MQ=255)
                                                                                                           gAAAAAAGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTg                     <  2:938083/138‑1 (MQ=255)
                                                                                                             aaaaaGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGcc                   <  1:150907/138‑1 (MQ=255)
                                                                                                             aaaaaGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGcc                   <  2:911996/138‑1 (MQ=255)
                                                                                                              aaaaGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCt                  >  2:374098/1‑138 (MQ=255)
                                                                                                                aaGGCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCttt                >  2:1201850/1‑138 (MQ=255)
                                                                                                                aaGGCCAG‑CCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCtttt               >  2:1289102/1‑138 (MQ=255)
                                                                                                                   gCCAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCtttttt             >  2:1476252/1‑138 (MQ=255)
                                                                                                                    ccAGCCCCCATGGATACCACCATTAAAGCCAGGAAAGCGTGCTTACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTta            <  2:1494481/138‑1 (MQ=255)
                                                                                                                          cccATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAAcc      >  2:1253850/1‑138 (MQ=255)
                                                                                                                          cccATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAAcc      >  1:1161181/1‑138 (MQ=255)
                                                                                                                            cATGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTc    <  1:374098/138‑1 (MQ=255)
                                                                                                                              tGGATACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCaa  <  1:295820/138‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                     
AGATCTTGCCAAACATAGCTCCCAGGGCGACAACCACCGCCAGGAAGCCGAGGGTGCCTCCCATCCCTTTTTCCATCGTCGCTGCGATTTTATCGAGCGGCATACCAGAAAAAAGGCCAGCCCCCATGGACACCACCATTAAAGCCAGGAAAGCGTGCATACGCGCCTTCATGACTAAAAACAGCAGCAGTAAAACAGACCCTACTGCTGTTAAAACAAGCGTTAATGTAGTCACTACTTATTTGCCTTTTTTAATAACCTCAA  >  NC_000913/3576827‑3577090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A