Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 120 93.5 3664254 88.3% 3235536 136.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,767,469 T→C pseudogene (249/702 nt) yibJ → putative RHS domain‑containing protein YibJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,767,4690TC98.8% 621.0 / ‑1.2 170pseudogene (249/702 nt)yibJputative RHS domain‑containing protein YibJ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (88/80);  minor base . (1/1);  total (89/81)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01

Only 100 of 177 total aligned reads displayed.

ACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCG  >  NC_000913/3767336‑3767601
                                                                                                                                     |                                                                                                                                    
aCCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGcgatg                                                                                                                                  <  1:1672855/138‑1 (MQ=14)
 cccGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGcgatga                                                                                                                                 >  1:21810/1‑138 (MQ=18)
        tACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCg                                                                                                                          <  2:1058551/138‑1 (MQ=37)
        tACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCg                                                                                                                          >  2:45372/1‑138 (MQ=21)
          cacGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGca                                                                                                                        <  1:291160/138‑1 (MQ=37)
            cGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGcatc                                                                                                                      >  1:628858/1‑138 (MQ=21)
                ggCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCt                                                                                                                  >  1:319368/1‑138 (MQ=37)
                 gcgcGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATgag                                                                                                                                >  1:1582299/1‑123 (MQ=21)
                 gcgcGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATgag                                                                                                                                <  2:1582299/123‑1 (MQ=18)
                 gcgcGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTg                                                                                                                 >  1:1073409/1‑138 (MQ=37)
                 gcgcGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTg                                                                                                                 >  2:133067/1‑138 (MQ=37)
                  cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTgc                                                                                                                >  2:729453/1‑138 (MQ=37)
                  cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTgc                                                                                                                >  2:302738/1‑138 (MQ=37)
                  cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTgc                                                                                                                >  2:1320454/1‑138 (MQ=37)
                    cgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTgcag                                                                                                              >  1:431855/1‑138 (MQ=37)
                    cgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTgcag                                                                                                              >  1:1394742/1‑138 (MQ=37)
                    cgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTgcag                                                                                                              >  2:1078657/1‑138 (MQ=37)
                    cgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTgcag                                                                                                              >  2:622369/1‑138 (MQ=37)
                      aaaaaTCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTgcagca                                                                                                            >  1:482752/1‑138 (MQ=37)
                                cTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGc                                                                                                  <  2:628858/138‑1 (MQ=255)
                                  gTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCTCGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCt                                                                                                <  2:1699448/138‑1 (MQ=255)
                                  gTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCt                                                                                                <  1:621369/138‑1 (MQ=255)
                                   tACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTg                                                                                               >  1:1369851/1‑138 (MQ=255)
                                     ccACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGcc                                                                                             <  1:1144635/138‑1 (MQ=255)
                                     ccACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGcc                                                                                             <  1:622369/138‑1 (MQ=255)
                                     ccACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGcc                                                                                             >  2:1059129/1‑138 (MQ=255)
                                       ccTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCgg                                                                                           <  2:1033676/137‑1 (MQ=255)
                                       aCTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCgg                                                                                           <  1:417248/138‑1 (MQ=255)
                                         tGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGAACAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCACTCGCCTGCCGGGt                                                                                         <  1:1259725/138‑1 (MQ=255)
                                          gCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTc                                                                                        <  1:788072/138‑1 (MQ=255)
                                          gCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTc                                                                                        >  2:805322/1‑138 (MQ=255)
                                          gCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTc                                                                                        <  2:431855/138‑1 (MQ=255)
                                          gCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTc                                                                                        <  1:1059129/138‑1 (MQ=255)
                                          gCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTc                                                                                        <  2:980056/138‑1 (MQ=255)
                                          gCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTc                                                                                        <  2:567490/138‑1 (MQ=255)
                                          gCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTc                                                                                        >  1:1829537/1‑138 (MQ=255)
                                          gCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTc                                                                                        <  1:1708385/138‑1 (MQ=255)
                                           cGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTca                                                                                       >  2:1145183/1‑138 (MQ=255)
                                           cGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTca                                                                                       >  1:1124025/1‑138 (MQ=255)
                                            gACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTcag                                                                                      <  2:319368/138‑1 (MQ=255)
                                            gACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTcag                                                                                      >  2:1429698/1‑138 (MQ=255)
                                            gACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTcag                                                                                      <  1:941135/138‑1 (MQ=255)
                                             aCCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCgg                                                                                           <  1:453731/132‑1 (MQ=255)
                                             aCCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTcagc                                                                                     >  1:1409330/1‑138 (MQ=255)
                                             aCCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTc                                                                                        <  2:1186509/135‑1 (MQ=255)
                                             aCCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGCAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTcagc                                                                                     >  2:1560362/1‑138 (MQ=255)
                                              ccATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTcagca                                                                                    <  2:1269448/138‑1 (MQ=255)
                                              ccATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTcagca                                                                                    <  1:1606738/138‑1 (MQ=255)
                                               cATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTcagcag                                                                                   >  2:424389/1‑138 (MQ=255)
                                               cATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTcagcag                                                                                   >  1:1702597/1‑138 (MQ=255)
                                                    cgGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTc                                                                                        <  1:250487/128‑1 (MQ=255)
                                                     ggCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTcag                                                                                      <  1:1785454/129‑1 (MQ=255)
                                                     ggCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTcag                                                                                      >  2:1785454/1‑129 (MQ=255)
                                                     ggCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTatgat                                                                             <  1:108404/138‑1 (MQ=255)
                                                          gCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATgagga                                                                        <  2:482752/138‑1 (MQ=255)
                                                          gCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATgagga                                                                        <  2:1409330/138‑1 (MQ=255)
                                                             gCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTc                                                                     <  2:21810/138‑1 (MQ=255)
                                                             gCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTc                                                                     <  1:1429698/138‑1 (MQ=255)
                                                             gCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGA‑‑GATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTatgat                                                                             <  1:578800/128‑1 (MQ=255)
                                                             gCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGA‑‑GATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTatgat                                                                             >  2:578800/1‑128 (MQ=255)
                                                              cTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTcc                                                                    <  1:907924/138‑1 (MQ=255)
                                                                   gcTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCt                                                               <  2:1224363/138‑1 (MQ=255)
                                                                       atcaGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTAt                                                           >  2:1723801/1‑138 (MQ=255)
                                                                              cGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAAcc                                                    >  1:656657/1‑138 (MQ=255)
                                                                                 aacgggCAACAGCGTGGTGCGCAGAATATGCGGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGcc                                                 <  2:1124025/135‑1 (MQ=255)
                                                                                 aaGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGcc                                                 <  1:816955/138‑1 (MQ=255)
                                                                                  aGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCa                                                <  1:1723801/138‑1 (MQ=255)
                                                                                   ggggCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCgg                                                                  <  2:28947/119‑1 (MQ=255)
                                                                                   ggggCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCg                                                                   <  2:1511639/118‑1 (MQ=255)
                                                                                   ggggCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCg                                                                   >  1:1511639/1‑118 (MQ=255)
                                                                                   ggggCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCAc                                               <  2:701853/138‑1 (MQ=255)
                                                                                   ggggCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCAc                                               <  1:719483/138‑1 (MQ=255)
                                                                                        aaCAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCta                                          >  1:1190150/1‑138 (MQ=255)
                                                                                              gtggtgCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGa                                    <  2:1747815/138‑1 (MQ=255)
                                                                                              gtggggCGCAGAATAGGATGAAGGGGGCAACCTGCGGGGCGTTAAGACCCCCCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGCCCGGCCTGTATTACAACCGCCACCGCTATTATGa                                    <  2:915147/138‑1 (MQ=14)
                                                                                               tggtgCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGAc                                   >  1:72193/1‑138 (MQ=255)
                                                                                                 gtgCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGAccc                                 >  2:538096/1‑138 (MQ=255)
                                                                                                 gtgCGCAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGAccc                                 >  2:1395097/1‑138 (MQ=255)
                                                                                                      cAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCgctgc                            <  1:1283037/138‑1 (MQ=255)
                                                                                                      cAGAATATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCgctgc                            <  2:1490929/138‑1 (MQ=255)
                                                                                                         aaTATGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTgg                         <  1:538096/138‑1 (MQ=255)
                                                                                                           tatGATGAATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTgg                         <  1:1656449/136‑1 (MQ=255)
                                                                                                              gatgaATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCgg                    >  1:36133/1‑138 (MQ=255)
                                                                                                                 gaATGGGGCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGtat                 <  2:456022/138‑1 (MQ=255)
                                                                                                                     ggggCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTgg                         <  2:1738929/126‑1 (MQ=255)
                                                                                                                     ggggCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTgg                         >  2:1620818/1‑126 (MQ=255)
                                                                                                                     ggggCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTgg                         >  1:1738929/1‑126 (MQ=255)
                                                                                                                     ggggCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGtat                 >  2:625381/1‑134 (MQ=255)
                                                                                                                     ggggCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATcg             >  2:1677865/1‑137 (MQ=255)
                                                                                                                     ggggCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCa             >  2:385313/1‑138 (MQ=255)
                                                                                                                     ggggCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCa             >  1:1290154/1‑138 (MQ=255)
                                                                                                                     ggggCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCa             >  2:1539180/1‑138 (MQ=255)
                                                                                                                     ggggCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCa             >  2:878170/1‑138 (MQ=255)
                                                                                                                       ggCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACt           >  2:507392/1‑138 (MQ=255)
                                                                                                                       ggCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACt           >  1:1461522/1‑138 (MQ=255)
                                                                                                                       ggCAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACt           >  1:983942/1‑138 (MQ=255)
                                                                                                                         cAACCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCa             <  1:315997/134‑1 (MQ=255)
                                                                                                                          aaCCTGCTGAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAg        <  1:1145183/138‑1 (MQ=255)
                                                                                                                              tgctgAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATc    >  1:759969/1‑138 (MQ=255)
                                                                                                                               gctgAGCGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATcc   <  1:1435221/138‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                    
ACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCG  >  NC_000913/3767336‑3767601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A