Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,772,577 T→C G99G (GGT→GGC)  mtlA → mannitol‑specific PTS enzyme IICBA component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,772,5770TC100.0% 503.2 / NA 139G99G (GGT→GGC) mtlAmannitol‑specific PTS enzyme IICBA component
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (78/61);  total (78/61)

Only 100 of 139 total aligned reads displayed.

ATCTCCTGCCGCTGCTGATCGGTTATACCGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGTTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGCATCATCGGGATGATCCTCGCTAT  >  NC_000913/3772453‑3772711
                                                                                                                            |                                                                                                                                      
aTCTCCTGCCGCTGCTGATCGGTTATACCGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGt                                                                                                                         >  1:2389262/1‑140 (MQ=255)
     cTGCCGCTGCTGATCGGTTATACCGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCt                                                                                                                    >  1:261642/1‑140 (MQ=255)
       gCCGCTGCTGATCGGTTATACCGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTgg                                                                                                                  >  1:1333743/1‑140 (MQ=255)
        ccGCTGCTGATCGGTTATACCGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGc                                                                                                                     <  2:1394972/136‑1 (MQ=255)
        ccGCTGCTGATCGGTTATACCGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGc                                                                                                                     >  1:1394972/1‑136 (MQ=255)
         cGCTGCTGATCGGTTATACCGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGggc                                                                                                                <  2:2209450/140‑1 (MQ=255)
           ctgctgATCGGTTATACCGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGggcgg                                                                                                              >  2:336622/1‑140 (MQ=255)
            tgctgATCGGTTATACCGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCTGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGggcggc                                                                                                             <  2:2349490/140‑1 (MQ=255)
            tgctgATCGGTTATACCGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGggcggc                                                                                                             >  2:127340/1‑140 (MQ=255)
             gctgATCGGTTATACCGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGggcggc                                                                                                             >  1:384533/1‑139 (MQ=255)
             gctgATCGGTTATACCGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCt                                                                                                            >  1:1990016/1‑140 (MQ=255)
              ctgATCGGTTATACCGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTg                                                                                                           <  1:2293588/140‑1 (MQ=255)
                   cGGTTATACCGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTcc                                                                                                                       <  1:1503197/123‑1 (MQ=255)
                     gtataaCCGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCAtt                                                                                                    >  2:959295/6‑140 (MQ=255)
                           ccGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGggc                                                                                                                <  1:969712/122‑1 (MQ=255)
                           ccGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGggc                                                                                                                >  2:969712/1‑122 (MQ=255)
                           ccGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCAc                                                                                              >  2:70191/1‑140 (MQ=255)
                              gtggtAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTc                                                                                           <  2:205262/140‑1 (MQ=255)
                              gtggtAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTc                                                                                           >  1:110485/1‑140 (MQ=255)
                              gtggtAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTc                                                                                           >  1:1358750/1‑140 (MQ=255)
                              gtggtAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTACGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTc                                                                                           >  2:6963/1‑140 (MQ=255)
                               tggtAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTa                                                                                                   >  1:656605/1‑131 (MQ=255)
                               tggtAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTa                                                                                                   <  2:656605/131‑1 (MQ=255)
                               tggtAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGc                                                                                                >  2:2378652/1‑134 (MQ=255)
                               tggtAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGc                                                                                                <  1:2378652/134‑1 (MQ=255)
                               tggtAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCg                                                                                          >  1:360472/1‑140 (MQ=255)
                               tggtAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCg                                                                                          >  1:1137538/1‑140 (MQ=255)
                               tggtAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTCCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCg                                                                                          >  1:914563/1‑140 (MQ=255)
                                ggtAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGa                                                                                         >  2:206161/1‑140 (MQ=255)
                                ggtAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGa                                                                                         >  2:1114534/1‑140 (MQ=255)
                                   aaGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCg                                                                                      >  1:469199/1‑140 (MQ=255)
                                        ggTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTggg                                                                                 >  1:930297/1‑140 (MQ=255)
                                         gTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGt                                                                                >  2:2410487/1‑140 (MQ=255)
                                         gTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGt                                                                                >  2:194311/1‑140 (MQ=255)
                                          tAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTa                                                                               <  2:312580/140‑1 (MQ=255)
                                          tAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTa                                                                               <  2:1836736/140‑1 (MQ=255)
                                          tAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTa                                                                               <  2:1990016/140‑1 (MQ=255)
                                          tAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTa                                                                               <  1:1021221/140‑1 (MQ=255)
                                          tAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTa                                                                               <  1:1817799/140‑1 (MQ=255)
                                           aGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAg                                                                              <  2:365246/140‑1 (MQ=255)
                                              cggcgAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACg                                                                           <  2:1300096/140‑1 (MQ=255)
                                                gcgAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGt                                                                         >  2:1344780/1‑140 (MQ=255)
                                                gcgAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGt                                                                         >  2:1041300/1‑140 (MQ=255)
                                                          cggcgTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAAt                                                               <  2:1038518/140‑1 (MQ=255)
                                                           ggcgTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATTATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATc                                                              <  2:2297116/140‑1 (MQ=255)
                                                           ggcgTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATc                                                              <  2:261642/140‑1 (MQ=255)
                                                             cgTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATc                                                              >  1:1523993/1‑138 (MQ=255)
                                                             cgTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATc                                                              <  2:1523993/138‑1 (MQ=255)
                                                             cgTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCg                                                            <  2:1713317/140‑1 (MQ=255)
                                                                 gTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGttt                                                        <  1:1803472/140‑1 (MQ=255)
                                                                      tGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTgaga                                                   <  1:1344780/140‑1 (MQ=255)
                                                                      tGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTgaga                                                   >  1:97952/1‑140 (MQ=255)
                                                                        ccATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGTAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATg                                                 <  2:1878617/140‑1 (MQ=255)
                                                                        ccATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATg                                                 <  1:194311/140‑1 (MQ=255)
                                                                         cATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGttt                                                        >  1:1332345/1‑132 (MQ=255)
                                                                         cATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGc                                                >  1:1781728/1‑140 (MQ=255)
                                                                          aTCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCt                                               <  2:2389262/140‑1 (MQ=255)
                                                                           tCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTg                                              >  1:295696/1‑140 (MQ=255)
                                                                           tCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTg                                              <  1:70191/140‑1 (MQ=255)
                                                                            caccacCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTgg                                             <  1:206161/140‑1 (MQ=255)
                                                                            caccacCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTgg                                             >  2:266745/1‑140 (MQ=255)
                                                                                  caTGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATa                                       >  2:2037189/1‑140 (MQ=255)
                                                                                    tGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGc                                                <  2:53274/129‑1 (MQ=255)
                                                                                    tGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGc                                                >  1:53274/1‑129 (MQ=255)
                                                                                    tGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAAc                                     >  2:917722/1‑140 (MQ=255)
                                                                                    tGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAAc                                     >  1:1020514/1‑140 (MQ=255)
                                                                                      ggCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACtt                                   >  1:1581192/1‑140 (MQ=255)
                                                                                      ggCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACtt                                   >  1:177672/1‑140 (MQ=255)
                                                                                      ggCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACtt                                   <  2:549269/140‑1 (MQ=255)
                                                                                      ggCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACtt                                   >  2:1632889/1‑140 (MQ=255)
                                                                                      ggCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACtt                                   >  2:1090906/1‑140 (MQ=255)
                                                                                       gCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTtc                                  >  1:1100608/1‑140 (MQ=255)
                                                                                       gCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTtc                                  >  2:1806508/1‑140 (MQ=255)
                                                                                       gCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTtc                                  >  2:1205655/1‑140 (MQ=255)
                                                                                        cGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCt                                               >  1:455315/1‑126 (MQ=255)
                                                                                        cGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCt                                               <  2:455315/126‑1 (MQ=255)
                                                                                         gTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTtctc                                >  1:1805538/1‑140 (MQ=255)
                                                                                         gTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTtctc                                >  2:353980/1‑140 (MQ=255)
                                                                                            aTCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGc                             >  1:825187/1‑140 (MQ=255)
                                                                                            aTCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGc                             >  2:380022/1‑140 (MQ=255)
                                                                                            aTCGTCGGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAAGCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGc                             <  2:1392759/140‑1 (MQ=255)
                                                                                               gtcgGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAgg                          <  2:1805538/140‑1 (MQ=255)
                                                                                               gtcgGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAgg                          <  1:563939/140‑1 (MQ=255)
                                                                                                tcgGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGTTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGc                         >  1:1263788/1‑140 (MQ=255)
                                                                                                tcgGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGc                         <  2:1423213/140‑1 (MQ=255)
                                                                                                tcgGCGCAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGc                         >  1:704002/1‑140 (MQ=255)
                                                                                                   gcgcAGACATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGcatc                      <  2:825187/140‑1 (MQ=255)
                                                                                                     gcAGACATGCCGATGTTCCTCGGCTATATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGcatcat                    <  2:1794916/140‑1 (MQ=255)
                                                                                                          cATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGCATCATCGGga               <  1:562964/140‑1 (MQ=255)
                                                                                                          cATGCCGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGCATCATCGGga               <  1:266745/140‑1 (MQ=255)
                                                                                                              ccGATGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGCATCATCGGgatgat           <  1:353980/140‑1 (MQ=255)
                                                                                                                  tGTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGCATCATCGGGATGATCCTc       <  1:380022/140‑1 (MQ=255)
                                                                                                                   gTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGCATCATCGGGATGATCCTCg      <  1:2392251/140‑1 (MQ=255)
                                                                                                                   gTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGCATCATCGGGATGATCCTCg      <  1:127340/140‑1 (MQ=255)
                                                                                                                   gTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGCATCATCGGGATGATCCTCg      <  2:1333743/140‑1 (MQ=255)
                                                                                                                   gTTCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGCATCATCGGGATGATCCTCg      >  2:1504363/1‑140 (MQ=255)
                                                                                                                     tCCTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGCATCATCGGGATGATCCTCGCt    >  2:1296928/1‑140 (MQ=255)
                                                                                                                       cTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGCATCATCGGGATGATCCTCGCTAt  >  2:1529259/1‑140 (MQ=255)
                                                                                                                       cTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGCATCATCGGGATGATCCTCGCTAt  >  1:1029044/1‑140 (MQ=255)
                                                                                                                       cTCGGCTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGCATCATCGGGATGATCCTCGCTAt  >  1:1854911/1‑140 (MQ=255)
                                                                                                                            |                                                                                                                                      
ATCTCCTGCCGCTGCTGATCGGTTATACCGGTGGTAAGCTGGTAGGCGGCGAACGTGGCGGCGTAGTCGGTGCCATCACCACCATGGGCGTTATCGTCGGCGCAGACATGCCGATGTTCCTCGGTTCTATGATTGCAGGTCCGCTGGGCGGCTGGTGCATTAAGCACTTCGACCGCTGGGTAGACGGTAAGATCAAATCCGGTTTTGAGATGCTGGTGAATAACTTCTCCGCAGGCATCATCGGGATGATCCTCGCTAT  >  NC_000913/3772453‑3772711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A