Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F28 I1 R1
|
120 |
93.5 |
3664254 |
88.3% |
3235536 |
136.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,881,536 |
C→T |
L262L (CTG→CTA) |
dnaN ← |
beta sliding clamp |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,881,536 | 0 | C | T | 100.0%
| 189.5
/ NA
| 55 | L262L (CTG→CTA) | dnaN | beta sliding clamp |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (27/28); total (27/28) |
TCGAGGATCTCTTCCGCTTCTTCCTGTTCCGGGTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGCAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAGGTGAAGATAAAGTCGCCAACGTGGGCGCGAATGTTGTTGCTGCCAA > NC_000913/3881402‑3881669
|
tCGAGGATCTCTTCCGCTTCTTCCTGTTCCGGGTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGa > 1:530433/1‑138 (MQ=255)
tCGAGGATCTCTTCCGCTCCTTCCTGCTCCGGGTTGTTGGCGGTTATTTTCCGCTGCTTTTCGCAGACATAAAGACCTATGCCGCGGAATTTCTCGTTAGAGAGAATCGCCCCGCGTACAAACGACCGATTGAGCAgg > 2:873523/1‑137 (MQ=255)
cGAGGATCTCTTCCGCTTCTTCCTGTTCCGGGTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGAt > 1:201096/1‑138 (MQ=255)
aGGATCTCTTCCGCTTCTTCCTGTTCCGGGTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCg > 2:711839/1‑138 (MQ=255)
gATCTCTTCCGCTTCTTCCTGTTCCGGGTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACGTAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGca > 2:944901/1‑138 (MQ=255)
gATCTCTTCCGCTTCTTCCTGTTCCGGGTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGca < 1:1318603/138‑1 (MQ=255)
cGCTTCTTCCTGTTCCGGGTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTc < 2:303081/138‑1 (MQ=255)
tcttcCTGTTCCGGGTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTTCAGa > 2:428821/1‑138 (MQ=255)
tcttcCTGTTCCGGGTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTCCCAGa < 2:429816/138‑1 (MQ=255)
cTGTTCCGGGTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGttt > 2:1249498/1‑138 (MQ=255)
gTTCCGGGTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGt < 2:1118441/138‑1 (MQ=255)
ttCCGGGTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTc < 2:717679/138‑1 (MQ=255)
ttCCGGGTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTc < 2:1705037/138‑1 (MQ=255)
ttCCGGGTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTc < 2:1234322/138‑1 (MQ=255)
ccGGGTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACGTAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCg < 1:944901/138‑1 (MQ=255)
ccGGGTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCg < 1:1249498/138‑1 (MQ=255)
ggTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCg > 1:1479624/1‑135 (MQ=255)
ggTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCg < 2:1479624/135‑1 (MQ=255)
ttgttgGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGttc > 2:1424813/1‑138 (MQ=255)
ggCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCgg > 2:1130645/1‑138 (MQ=255)
ggCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACCCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCgg > 1:880837/1‑138 (MQ=255)
gATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAAc < 1:25026/138‑1 (MQ=255)
tGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATaa < 1:592114/138‑1 (MQ=255)
ttttCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATcc > 1:491817/1‑138 (MQ=255)
tttCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCg > 2:1269699/1‑138 (MQ=255)
gCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGaa < 1:1424813/138‑1 (MQ=255)
cTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGGGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAg > 2:1622363/1‑138 (MQ=255)
tGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGGGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGc < 1:1622363/138‑1 (MQ=255)
tGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGc < 1:1281082/138‑1 (MQ=255)
tGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGc < 2:897510/138‑1 (MQ=255)
aTAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGAcc > 2:1149967/1‑138 (MQ=255)
aGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATcc < 2:201096/138‑1 (MQ=255)
aCGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGt > 1:1580496/1‑138 (MQ=255)
gccgcGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGttt < 1:1643535/138‑1 (MQ=255)
gccgcGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGttt > 2:1551808/1‑138 (MQ=255)
gccgcGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGttt > 1:1570220/1‑138 (MQ=255)
gccgcGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGttt > 2:703337/1‑138 (MQ=255)
gcgGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGa < 2:491817/138‑1 (MQ=255)
cgGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTTCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAg < 1:428821/138‑1 (MQ=255)
ggAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAgg > 2:502564/1‑138 (MQ=255)
ggAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAgg > 2:296530/1‑138 (MQ=255)
gAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTgg < 1:182023/134‑1 (MQ=255)
gAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTgg > 2:182023/1‑134 (MQ=255)
gAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAGGt > 1:592611/1‑138 (MQ=255)
gAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAGGt > 1:41922/1‑138 (MQ=255)
ttCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAGGTGAAg < 2:171400/138‑1 (MQ=255)
ttCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAGGTGAAg < 2:880837/138‑1 (MQ=255)
gagagaATCGCCGCGCGAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAGGTGAAGATAAAGTCg < 1:1269699/138‑1 (MQ=255)
cgcgcgAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAGGTGAAGATAAAGTCGCCAACGTGGgc < 1:296530/138‑1 (MQ=255)
cgcgAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAGGTGAAGAt < 1:159406/118‑1 (MQ=255)
cgcgAGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAGGTGAAGAt > 2:159406/1‑118 (MQ=255)
aGCAAACGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAGGTGAAGATAAAGTCGCCAACGTGGGCGCGAAt > 2:51253/1‑138 (MQ=255)
aCGCCTGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAGGTGAAGATAAAGTCGCCAACGTGGGCGCGAAtgttgt < 1:703337/138‑1 (MQ=255)
tGCTTGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAGGTGAAGATAAAGTCGCCAACGTGGGCGCGAATGTTGTtgctg < 1:1551808/138‑1 (MQ=255)
ttGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAGGTGAAGATAAAGTCGCCAACGTGGGCGCGAATGTTGTTGCTGCCa > 1:632545/1‑138 (MQ=255)
tGAGTAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAGGTGAAGATAAAGTCGCCAACGTGGGCGCGAATGTTGTTGCTGCCaa > 1:604157/1‑138 (MQ=255)
|
TCGAGGATCTCTTCCGCTTCTTCCTGTTCCGGGTTGTTGGCGGTGATTTTCAGCTGGTTTTCGCTGACATAAAGACGTACGCCGCGGAATTTCTCGTTAGAGAGAATCGCCGCGCGAGCAAACGCCTGCTTGAGCAGATCGCAGCCAGCTTCCAGATGTTTGTCCGGGTTCTTCGGCAGAACGCGGCGATAATCCGGGAAGCGACCATCCACCAGTTTGGAGGTGAAGATAAAGTCGCCAACGTGGGCGCGAATGTTGTTGCTGCCAA > NC_000913/3881402‑3881669
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
