Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F28 I1 R1
|
120 |
93.5 |
3664254 |
88.3% |
3235536 |
136.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,929,287 |
C→T |
W106* (TGG→TAG) |
viaA ← |
protein ViaA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,929,287 | 0 | C | T | 99.2%
| 425.2
/ ‑4.5
| 120 | W106* (TGG→TAG) | viaA | protein ViaA |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (60/59); total (60/60) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.64e-01 |
Only 100 of 121 total aligned reads displayed.
TCTTCTTCTAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCT > NC_000913/3929152‑3929418
|
tcttcttctAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTAt > 1:99806/1‑138 (MQ=255)
tcttcttctAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTAt > 2:94116/1‑138 (MQ=255)
ttcttctAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTGGCATCAACCAACTGTCGGGCTTGTTCTGCCTATgg > 1:1097801/1‑138 (MQ=255)
tAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAg < 2:123130/138‑1 (MQ=255)
tAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAg < 2:1570702/138‑1 (MQ=255)
tAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAg < 2:673288/138‑1 (MQ=255)
aGCTTTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGa > 2:215955/1‑138 (MQ=255)
aGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGa > 1:1254844/1‑138 (MQ=255)
gCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGAc < 1:1022434/138‑1 (MQ=255)
cTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACg > 1:105620/1‑138 (MQ=255)
cTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACg > 2:839817/1‑138 (MQ=255)
ttGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATg > 2:189701/1‑138 (MQ=255)
tGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGc < 1:164734/138‑1 (MQ=255)
gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCa < 2:629571/129‑1 (MQ=255)
gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCa > 1:629571/1‑129 (MQ=255)
gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCa < 1:1487052/138‑1 (MQ=255)
gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCa < 1:702372/138‑1 (MQ=255)
gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCa < 2:105620/138‑1 (MQ=255)
gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCa < 1:363323/138‑1 (MQ=255)
gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCa < 2:1366019/138‑1 (MQ=255)
gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCa > 1:1103945/1‑138 (MQ=255)
gATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCa < 2:80268/138‑1 (MQ=255)
aCGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGt < 1:1735335/138‑1 (MQ=255)
cgtcgtTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTc < 1:192631/138‑1 (MQ=255)
cgtcgtTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTc < 2:829578/138‑1 (MQ=255)
gtcgtTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTcc > 2:1375311/1‑138 (MQ=255)
cgtTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAg < 2:1510318/138‑1 (MQ=255)
tgcttgcACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGAt > 1:1012440/1‑138 (MQ=255)
tgcttgcACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTGCTGCCTAGGGAGAATTCAGACGATGCAGTAAGTCTAGGAt > 2:1618062/1‑138 (MQ=255)
gcttgcACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATc > 1:1755296/1‑138 (MQ=255)
cttgcACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCt < 1:1618062/138‑1 (MQ=255)
tgcACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCtgt < 1:1502490/138‑1 (MQ=255)
cACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTgg > 2:394036/1‑138 (MQ=255)
aCGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTGGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGt < 2:1097801/138‑1 (MQ=255)
aCGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGt < 1:244612/138‑1 (MQ=255)
aCGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGt < 2:125381/138‑1 (MQ=255)
gATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAg < 2:970952/138‑1 (MQ=255)
cAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTg > 2:1144654/1‑138 (MQ=255)
cTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGcaca < 1:215955/138‑1 (MQ=255)
ttAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGca > 1:670732/1‑135 (MQ=255)
ttAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGca < 2:670732/135‑1 (MQ=255)
ttAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACaa > 1:752401/1‑138 (MQ=255)
ttAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACaa > 2:1233866/1‑138 (MQ=255)
ttAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACaa > 2:1035516/1‑138 (MQ=255)
aaaCGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATa < 1:774001/138‑1 (MQ=255)
aaaCGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATa < 1:1073701/138‑1 (MQ=255)
aCGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCtggtag > 2:259337/1‑120 (MQ=255)
aCGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATaaa > 1:450841/1‑138 (MQ=255)
aCGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATaaa > 2:1697398/1‑138 (MQ=255)
aCGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATaaa > 1:761037/1‑138 (MQ=255)
aCGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATaaa < 1:839817/138‑1 (MQ=255)
cGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAAc > 2:568183/1‑138 (MQ=255)
cGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAAc < 2:1223336/138‑1 (MQ=255)
gCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACt > 2:1804332/1‑138 (MQ=255)
ccAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACtg < 1:1060081/138‑1 (MQ=255)
ccAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACtg < 2:1103945/138‑1 (MQ=255)
aCGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTgg > 2:1516958/1‑138 (MQ=255)
aCGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTgg < 2:761037/138‑1 (MQ=255)
cGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGc > 2:948996/1‑138 (MQ=255)
gaAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGcaca > 1:917482/1‑119 (MQ=255)
gaAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGcaca < 2:879715/119‑1 (MQ=255)
gaAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGcaca > 1:879715/1‑119 (MQ=255)
gaAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGgaga > 2:224328/1‑138 (MQ=255)
aaaaGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAgagg < 2:450841/138‑1 (MQ=255)
aaaGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAgagga < 1:1342038/138‑1 (MQ=255)
aGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGc < 1:530372/138‑1 (MQ=255)
gtgtgtAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTgg < 1:189701/138‑1 (MQ=255)
gtgtgtAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTgg < 1:443721/138‑1 (MQ=255)
tgtAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCtt < 2:363564/138‑1 (MQ=255)
tAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAgagg < 2:1069276/127‑1 (MQ=255)
aCGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCt < 1:1516958/138‑1 (MQ=255)
aCGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCt < 1:804361/138‑1 (MQ=255)
cGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTg < 2:1401950/138‑1 (MQ=255)
cTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGAt < 1:1035516/138‑1 (MQ=255)
aTCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATc < 2:80532/138‑1 (MQ=255)
cGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCAc > 1:921549/1‑138 (MQ=255)
cGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCAc > 1:1122742/1‑138 (MQ=255)
cGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCAc > 2:390798/1‑138 (MQ=255)
tGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCtt > 2:1380869/1‑138 (MQ=255)
tGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCtt > 2:137407/1‑138 (MQ=255)
gTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTc > 2:680250/1‑138 (MQ=255)
ttAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCg < 1:568183/138‑1 (MQ=255)
tAGCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCgg > 1:302072/1‑138 (MQ=255)
gCATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTg > 2:1077765/1‑138 (MQ=255)
cATCAACCAACTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGa > 1:1757379/1‑138 (MQ=255)
ccaacTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCcg > 2:736053/1‑138 (MQ=255)
agcTGTCGGGCTTGTTCTGCCTATGGAGATTGCAGACTATGCTGCAAGTCCAGGATCTGCGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGCGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCcggc > 2:1060897/3‑138 (MQ=255)
aacTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCcggc < 1:224328/138‑1 (MQ=255)
aacTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCcggc > 2:966477/1‑138 (MQ=255)
aacTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCcggc > 2:827073/1‑138 (MQ=255)
aacTGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCcggc > 1:97015/1‑138 (MQ=255)
tGTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCggg > 2:706564/1‑138 (MQ=255)
gTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGa > 1:1795966/1‑138 (MQ=255)
gTCGGGCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGa < 1:1077765/138‑1 (MQ=255)
gggCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTc > 1:636583/1‑138 (MQ=255)
gggCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTc > 1:1532925/1‑138 (MQ=255)
gggCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTc > 1:1624999/1‑138 (MQ=255)
ggCTTGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCg < 1:137439/138‑1 (MQ=255)
tGTTCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCa < 1:827073/138‑1 (MQ=255)
tCTGCCTATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCt > 2:905627/1‑138 (MQ=255)
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TCTTCTTCTAATAGCTGTTGATTTAACGTCGTTGCTTGCACGATCAGACTTAAACGCCAACGCTGGAGAAAAAGCGTGTGTAACGCTGAAGTGATCGTGCTGTTAGCATCAACCAACTGTCGGGCTTGTTCTGCCCATGGAGAATTCAGACGATGCAGTAAGTCCAGGATCTGTGGTAGCTGCACAATAAACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCT > NC_000913/3929152‑3929418
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
