Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 120 93.5 3664254 88.3% 3235536 136.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,379,075 T→C K98E (AAA→GAA)  frdD ← fumarate reductase membrane protein FrdD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,379,0750TC98.9% 329.2 / ‑4.5 91K98E (AAA→GAA) frdDfumarate reductase membrane protein FrdD
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (50/40);  total (51/40)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.16e-01

GGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCAGAACGCGCT  >  NC_000913/4378947‑4379209
                                                                                                                                |                                                                                                                                      
ggTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAgg                                                                                                                               >  1:1019351/1‑138 (MQ=255)
  ccTGGTTCCAAAACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTa                                                                                                                             <  2:144240/137‑1 (MQ=255)
   cTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTAc                                                                                                                            <  1:1813589/138‑1 (MQ=255)
    tGGTTTCCATAAAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGGGATGCGTTAGATTGTACCGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACg                                                                                                                           <  2:1590336/138‑1 (MQ=255)
     ggTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGt                                                                                                                          >  2:163263/1‑138 (MQ=255)
       tttCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTgg                                                                                                                        >  1:139774/1‑138 (MQ=255)
       tttCAATACAAAACGCCTGGCCTTAGGCGGGCGGGCGAAAAACCTTCGATGGGTGAGATTGGAACGCCAACAAATACAGAGACAACGGTGAGGATAGCAACCAGACCGTAGAAAACCCATTCGCCCGCAGGGACgggg                                                                                                                        >  2:977669/1‑138 (MQ=255)
        ttCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGa                                                                                                                       >  1:573216/1‑138 (MQ=255)
           cATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGAttt                                                                                                                    >  2:768733/1‑138 (MQ=255)
           cATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGAttt                                                                                                                    <  2:1117902/138‑1 (MQ=255)
           cATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGAttt                                                                                                                    <  1:163263/138‑1 (MQ=255)
             tACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTc                                                                                                                  >  1:261297/1‑138 (MQ=255)
              aCAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCa                                                                                                                 <  1:1329304/138‑1 (MQ=255)
                  aaCGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATc                                                                                                             <  1:768733/138‑1 (MQ=255)
                   aCGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCg                                                                                                            >  1:1387944/1‑138 (MQ=255)
                      gCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGc                                                                                                         >  1:1332004/1‑138 (MQ=255)
                         cGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATc                                                                                                      >  2:1407778/1‑138 (MQ=255)
                          gCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATcg                                                                                                     <  1:686210/138‑1 (MQ=255)
                          gCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATcg                                                                                                     <  2:1442655/138‑1 (MQ=255)
                          gCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATcg                                                                                                     <  1:1491649/138‑1 (MQ=255)
                           ccATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATcgc                                                                                                    <  1:1179704/138‑1 (MQ=255)
                           ccATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATcgc                                                                                                    <  1:107513/138‑1 (MQ=255)
                              tAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCgtg                                                                                                 <  1:345237/138‑1 (MQ=255)
                                  cGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGc                                                                                             <  2:1424749/138‑1 (MQ=255)
                                   gggCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCa                                                                                            <  1:200455/138‑1 (MQ=255)
                                   gggCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCa                                                                                            <  1:1407778/138‑1 (MQ=255)
                                   gggCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCa                                                                                            <  2:1089196/138‑1 (MQ=255)
                                   gggCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCa                                                                                            <  2:1019351/138‑1 (MQ=255)
                                   gggCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCa                                                                                            <  1:725966/138‑1 (MQ=255)
                                       cGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCAt                                                                                                       >  2:1142191/1‑123 (MQ=255)
                                       cGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCAt                                                                                                       <  1:1142191/123‑1 (MQ=255)
                                       cGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCa                                                                                            >  1:982082/1‑134 (MQ=255)
                                       cGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCa                                                                                            <  2:982082/134‑1 (MQ=255)
                                       cGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACg                                                                                        >  2:987484/1‑138 (MQ=255)
                                        ggATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACgg                                                                                       >  1:963814/1‑138 (MQ=255)
                                                     cGATGCGTTAGACTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAaccacacc                                                                          >  2:350704/1‑138 (MQ=255)
                                                      gATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAaccacacca                                                                         >  2:25451/1‑138 (MQ=255)
                                                      gATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGgtg                                                                                     >  2:1365711/1‑126 (MQ=255)
                                                      gATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGgtg                                                                                     <  1:1365711/126‑1 (MQ=255)
                                                      gATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAaccacacca                                                                         >  1:1547226/1‑138 (MQ=255)
                                                      gATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAaccacacca                                                                         >  2:1566834/1‑138 (MQ=255)
                                                      gATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAaccacacca                                                                         >  1:891941/1‑138 (MQ=255)
                                                          cGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGc                                                                     >  2:1675953/1‑138 (MQ=255)
                                                          cGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGc                                                                     <  2:573216/138‑1 (MQ=255)
                                                                aTTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGa                                                               >  2:1037755/1‑138 (MQ=255)
                                                                 ttGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGaa                                                              <  2:891941/138‑1 (MQ=255)
                                                                 ttGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGaa                                                              <  2:261297/138‑1 (MQ=255)
                                                                  tGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAAc                                                             <  2:1017671/138‑1 (MQ=255)
                                                                      aCGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGatc                                                         >  2:170057/1‑138 (MQ=255)
                                                                      aCGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGatc                                                         >  2:749347/1‑138 (MQ=255)
                                                                      aCGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGatc                                                         >  1:1143988/1‑138 (MQ=255)
                                                                      aCGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGatc                                                         >  1:652414/1‑138 (MQ=255)
                                                                       cGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGatca                                                        <  2:652414/138‑1 (MQ=255)
                                                                       cGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGatca                                                        >  2:961224/1‑138 (MQ=255)
                                                                        gACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGatcat                                                       >  1:1006383/1‑138 (MQ=255)
                                                                           acCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATcag                                                    >  2:239597/1‑138 (MQ=255)
                                                                           acCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATcag                                                    <  2:1143988/138‑1 (MQ=255)
                                                                            ccAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATcagg                                                   >  1:1506762/1‑138 (MQ=255)
                                                                            ccAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATcagg                                                   >  2:1511444/1‑138 (MQ=255)
                                                                            ccAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATcagg                                                   >  1:78685/1‑138 (MQ=255)
                                                                             cAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATcagga                                                  >  2:1203652/1‑138 (MQ=255)
                                                                                 cAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATcaggaacag                                              >  1:31789/1‑138 (MQ=255)
                                                                                      tGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATa                                         >  2:804859/1‑138 (MQ=255)
                                                                                      tGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATa                                         <  2:1534754/138‑1 (MQ=255)
                                                                                          aaCTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATAcgcg                                     <  1:329097/138‑1 (MQ=255)
                                                                                           aCTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGa                                    >  2:1069323/1‑138 (MQ=255)
                                                                                                        cagcCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATAcgcg                                     <  2:1081718/124‑1 (MQ=255)
                                                                                                        cagcCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGGGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATAcgcg                                     >  1:1081718/1‑124 (MQ=255)
                                                                                                         agcCAGACCGTAGAGAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTg                      >  2:608318/1‑138 (MQ=255)
                                                                                                         agcCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTg                      >  2:1441981/1‑138 (MQ=255)
                                                                                                         agcCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTg                      >  2:1765361/1‑138 (MQ=255)
                                                                                                         agcCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTg                      >  2:465823/1‑138 (MQ=255)
                                                                                                          gcCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTgc                     >  2:542960/1‑138 (MQ=255)
                                                                                                          gcCAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGAGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTgc                     >  2:1633825/1‑138 (MQ=255)
                                                                                                           ccAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTgcg                    >  1:930016/1‑138 (MQ=255)
                                                                                                           ccAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTgcg                    >  1:1701905/1‑138 (MQ=255)
                                                                                                           ccAGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTgcg                    >  2:355664/1‑138 (MQ=255)
                                                                                                             aGACCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGcgcg                  >  2:391216/1‑138 (MQ=255)
                                                                                                               aCCGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGaa                >  1:207530/1‑138 (MQ=255)
                                                                                                                 cGTAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACg              >  2:689979/1‑138 (MQ=255)
                                                                                                                   tAGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGcc            >  2:416920/1‑138 (MQ=255)
                                                                                                                    aGAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCa           >  2:1125032/1‑138 (MQ=255)
                                                                                                                     gAAAACCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCAg          >  1:381522/1‑138 (MQ=255)
                                                                                                                      aaaaCCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCAGa         <  2:1006383/138‑1 (MQ=255)
                                                                                                                        aaCCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCAGAAc       <  2:1701905/138‑1 (MQ=255)
                                                                                                                        aaCCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCAGAAc       <  1:1765361/138‑1 (MQ=255)
                                                                                                                        aaCCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCAGAAc       <  1:465823/138‑1 (MQ=255)
                                                                                                                        aaCCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCAGAAc       <  1:1633825/138‑1 (MQ=255)
                                                                                                                        aaCCCATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCAGAAc       <  1:542960/138‑1 (MQ=255)
                                                                                                                           ccATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCAGAAcgcg    <  1:1203652/138‑1 (MQ=255)
                                                                                                                           ccATTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCAGAAcgcg    >  1:1379882/1‑138 (MQ=255)
                                                                                                                             aTTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACg              <  2:550818/126‑1 (MQ=255)
                                                                                                                             aTTCGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCAGAACGCGCt  <  1:961224/138‑1 (MQ=255)
                                                                                                                                |                                                                                                                                      
GGTCTGGTTTCCATACAAAACGGCCCGCCATAGGCGGGCCGGATTTACATTGGCGATGCGTTAGATTGTAACGACACCAATCAGCGTGACAACTGTCAGGATAGCAGCCAGACCGTAGAAAACCCATTTGCCCGCAGGTACGTGGATTTTCAGATCGTGCATCGCGTGGTGCATACGGTGTAAACCACACCACAGCGGCAGAACGATCATCAGGAACAGGAATACGCGACCAATGAAGCTCTGCGCGAACGCCAGAACGCGCT  >  NC_000913/4378947‑4379209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A