Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 191 83.5 2830284 99.3% 2810472 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 192,849 A→G intergenic (+269/‑23) pyrH → / → frr UMP kinase/ribosome‑recycling factor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913192,8490AG100.0% 373.1 / NA 100intergenic (+269/‑23)pyrH/frrUMP kinase/ribosome‑recycling factor
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (65/35);  total (65/35)

ATGGCGAGCACTGCCCGGGGCCAAAATGGCAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGACAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTCCCAGCCTGCTGGA  >  NC_000913/192718‑192984
                                                                                                                                   |                                                                                                                                       
aTGGCGAGCACTGCCCGGGGCCAAAATGGCAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGtttt                                                                                                                                 <  1:1328852/140‑1 (MQ=255)
aTGGCGAGCACTGCCCGGGGCCAAAATGGCAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGtttt                                                                                                                                 <  1:775151/140‑1 (MQ=255)
  ggCGAGCACTGCCCGGGGCCAAAATGGCAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCa                                                                                                                               <  2:1202566/140‑1 (MQ=255)
    cGAGCACTGCCCGGGGCCAAAATGGCAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAg                                                                                                                             >  1:400246/1‑140 (MQ=255)
    cGAGCACTGCCCGGGGCCAAAATGGCAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAg                                                                                                                             <  2:400246/140‑1 (MQ=255)
    cGAGCACTGCCCGGGGCCAAAATGGCAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAg                                                                                                                             >  1:661325/1‑140 (MQ=255)
    cGAGCACTGCCCGGGGCCAAAATGGCAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGCTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAg                                                                                                                             >  2:378214/1‑140 (MQ=255)
             cccGGGGCCAAAATGGCAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTaa                                                                                                                    >  2:565158/1‑140 (MQ=255)
             cccGGGGCCAAAATGGCAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTaa                                                                                                                    >  1:624954/1‑140 (MQ=255)
             cccGGGGCCAAAATGGCAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTaa                                                                                                                    >  2:1090124/1‑140 (MQ=255)
                       aaaTGGCAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGc                                                                                                          <  2:816635/140‑1 (MQ=255)
                       aaaTGGCAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGc                                                                                                          >  1:167545/1‑140 (MQ=255)
                       aaaTGGCAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGc                                                                                                          >  1:831431/1‑140 (MQ=255)
                         aTGGCAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGa                                                                                                        <  1:565158/140‑1 (MQ=255)
                         aTGGCAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGa                                                                                                        <  1:503756/140‑1 (MQ=255)
                             cAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATc                                                                                                    >  2:21020/1‑140 (MQ=255)
                                ataaaataGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGa                                                                                                 <  2:624954/140‑1 (MQ=255)
                                  aaaataGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGaaa                                                                                               <  1:1310518/140‑1 (MQ=255)
                                     ataGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGa                                                                                            <  2:661325/140‑1 (MQ=255)
                                         ccTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGa                                                                                                        >  2:1056729/1‑124 (MQ=255)
                                         ccTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGa                                                                                                        <  1:1056729/124‑1 (MQ=255)
                                         ccTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCt                                                                                        >  1:620260/1‑140 (MQ=255)
                                             ataatCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAg                                                                                    <  1:563522/140‑1 (MQ=255)
                                              taatCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGc                                                                                         >  1:609707/1‑134 (MQ=255)
                                              taatCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGc                                                                                         <  2:609707/134‑1 (MQ=255)
                                                  ccAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGc                                                                               >  1:1023599/1‑140 (MQ=255)
                                                    aGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCAt                                                                             >  2:618771/1‑140 (MQ=255)
                                                     gACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATg                                                                            >  2:527279/1‑140 (MQ=255)
                                                        gATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGAc                                                                         <  1:473871/140‑1 (MQ=255)
                                                          ttACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACaa                                                                       <  2:831431/140‑1 (MQ=255)
                                                          ttACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACaa                                                                       <  1:842309/140‑1 (MQ=255)
                                                          ttACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACaa                                                                       <  1:141945/140‑1 (MQ=255)
                                                          ttACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACaa                                                                       <  1:618771/140‑1 (MQ=255)
                                                          ttACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACaa                                                                       <  2:167545/140‑1 (MQ=255)
                                                           tACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATg                                                                            >  1:344446/1‑134 (MQ=255)
                                                           tACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATg                                                                            <  2:344446/134‑1 (MQ=255)
                                                             cccGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATg                                                                    >  2:606976/1‑140 (MQ=255)
                                                                  aaTATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAg                                                               >  1:587532/1‑140 (MQ=255)
                                                                    tatGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGaa                                                             >  2:672138/1‑140 (MQ=255)
                                                                       gTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCg                                                          >  2:510828/1‑140 (MQ=255)
                                                                       gTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCg                                                          >  2:832879/1‑140 (MQ=255)
                                                                        attAAACAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGt                                                         >  1:4308/2‑140 (MQ=255)
                                                                            aTCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCaa                                                     >  2:260276/1‑140 (MQ=255)
                                                                                gggCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAAcc                                                 <  1:527279/140‑1 (MQ=255)
                                                                                 ggCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAAccc                                                >  1:230201/1‑140 (MQ=255)
                                                                                 ggCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAAccc                                                >  2:1249767/1‑140 (MQ=255)
                                                                                 ggCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGACTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAAccc                                                >  2:1262610/1‑140 (MQ=255)
                                                                                  gCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGtt                                                        >  1:411292/1‑131 (MQ=255)
                                                                                  gCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGtt                                                        <  2:411292/131‑1 (MQ=255)
                                                                                      taCTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATc                                           >  2:679985/1‑140 (MQ=255)
                                                                                      taCTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATc                                           >  1:1103542/1‑140 (MQ=255)
                                                                                           aGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCaa                                      >  2:319943/1‑140 (MQ=255)
                                                                                           aGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCaa                                      >  1:319084/1‑140 (MQ=255)
                                                                                           aGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCaa                                      >  2:1295622/1‑140 (MQ=255)
                                                                                           aGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCaa                                      >  1:1116270/1‑140 (MQ=255)
                                                                                           aGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCaa                                      >  2:442966/1‑140 (MQ=255)
                                                                                             cacaCTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCaaaa                                    >  1:1025835/1‑140 (MQ=255)
                                                                                                  ttCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCa                                       >  1:345030/1‑132 (MQ=255)
                                                                                                  ttCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCa                                       <  2:345030/132‑1 (MQ=255)
                                                                                                  ttCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGc                               >  1:1174824/1‑140 (MQ=255)
                                                                                                  ttCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGc                               >  2:711869/1‑140 (MQ=255)
                                                                                                  ttCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGc                               >  2:662001/1‑140 (MQ=255)
                                                                                                  ttCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGc                               <  1:294177/140‑1 (MQ=255)
                                                                                                  ttCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGc                               >  2:1380655/1‑140 (MQ=255)
                                                                                                  ttCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGc                               >  2:485949/1‑140 (MQ=255)
                                                                                                  ttCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGc                               >  2:294177/1‑140 (MQ=255)
                                                                                                   tCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCa                              <  2:143171/140‑1 (MQ=255)
                                                                                                   tCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCa                              <  1:397519/140‑1 (MQ=255)
                                                                                                   tCCACTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCa                              <  1:606976/140‑1 (MQ=255)
                                                                                                       cTGTGTGTGACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACggg                          >  2:1094495/1‑140 (MQ=255)
                                                                                                            tgtgACTGTCTGGTCTGACTGGGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTg                     >  2:1001672/1‑140 (MQ=255)
                                                                                                            tgtgACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAATGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTg                     >  1:1158702/1‑140 (MQ=255)
                                                                                                            tgtgACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTg                     >  2:126356/1‑140 (MQ=255)
                                                                                                            tgtgACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTg                     >  2:1023757/1‑140 (MQ=255)
                                                                                                            tgtgACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTg                     <  1:1380655/140‑1 (MQ=255)
                                                                                                            tgtgACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTg                     >  2:544018/1‑140 (MQ=255)
                                                                                                            tgtgACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTg                     >  1:565308/1‑140 (MQ=255)
                                                                                                            tgtgACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTg                     >  1:381846/1‑140 (MQ=255)
                                                                                                            tgtgACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTg                     <  2:156365/140‑1 (MQ=255)
                                                                                                             gtgACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGc                    <  1:672138/140‑1 (MQ=255)
                                                                                                               gACTGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCtt                  >  2:273750/1‑140 (MQ=255)
                                                                                                                  tGTCTGGTCTGACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTtctc               >  2:1386867/1‑140 (MQ=255)
                                                                                                                    tctggtctgACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGt                         <  1:317525/128‑1 (MQ=255)
                                                                                                                    tctggtctgACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGt                         >  2:317525/1‑128 (MQ=255)
                                                                                                                    tctggtctgACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTccc             >  1:413485/1‑140 (MQ=255)
                                                                                                                    tctggtctgACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTccc             >  2:1024490/1‑140 (MQ=255)
                                                                                                                    tctggtctgACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTccc             >  1:1352988/1‑140 (MQ=255)
                                                                                                                    tctggtctgACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTccc             >  1:646475/1‑140 (MQ=255)
                                                                                                                      tggtctgACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTCCCAg           >  1:695637/1‑140 (MQ=255)
                                                                                                                      tggtctgACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTCCCAg           >  2:216641/1‑140 (MQ=255)
                                                                                                                      tggtctgACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTCCCAg           >  1:1271876/1‑140 (MQ=255)
                                                                                                                      tggtctgACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTCCCAg           >  1:1403557/1‑140 (MQ=255)
                                                                                                                      tggtctgACTGAGGCAAGTTTTCAAGGATTCGTAACGAGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAGCCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTCCCAg           >  2:1249384/1‑140 (MQ=255)
                                                                                                                        gtctgACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTCCCAGcc         <  1:273750/140‑1 (MQ=255)
                                                                                                                         tctgACTGAGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTCCCAGCct        >  2:1358357/1‑140 (MQ=255)
                                                                                                                          ctgactgaGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTCCCAGCctg       <  2:230201/140‑1 (MQ=255)
                                                                                                                            gactgaGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTCCCAGCctgct     <  1:1358357/140‑1 (MQ=255)
                                                                                                                             actgaGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTCCCAGCctgctg    >  2:792879/1‑140 (MQ=255)
                                                                                                                              ctgaGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTCCCAGCCTGCTgg   >  1:581210/1‑140 (MQ=255)
                                                                                                                               tgaGGCAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTCCCAGCCTGCTGGa  <  1:1386867/140‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                       
ATGGCGAGCACTGCCCGGGGCCAAAATGGCAAATAAAATAGCCTAATAATCCAGACGATTACCCGTAATATGTTTAATCAGGGCTATACTTAGCACACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGACAAGTTTTCAAGGATTCGTAACGTGATTAGCGATATCAGAAAAGATGCTGAAGTACGCATGGACAAATGCGTAGAAGCGTTCAAAACCCAAATCAGCAAAATACGCACGGGTCGTGCTTCTCCCAGCCTGCTGGA  >  NC_000913/192718‑192984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A