Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	195,355	A→G	I151M (ATA→ATG)	ispU →	undecaprenyl diphosphate synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	195,355	0	A	G	100.0%	613.9 / NA	167	I151M (ATA→ATG)	ispU	undecaprenyl diphosphate synthase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (76/91); total (76/91)

Only 100 of 167 total aligned reads displayed.

CGTCTGCGTATTATTGGCGATACCAGTCGCTTTAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATAGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTAGGACTG  >  NC_000913/195218‑195488

cGTCTGCGTATTATTGGCGATACCAGTCGCTTTAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGt                                                                                                                                     >  1:1953882/1‑140 (MQ=255)

cGTCTGCGTATTATTGGCGATACCAGTCGCTTTAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGt                                                                                                                                     >  1:556404/1‑140 (MQ=255)

cGTCTGCGTATTATTGGCGATACCAGTCGCTTTAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGt                                                                                                                                     >  1:99353/1‑140 (MQ=255)

 gTCTGCGTATTATTGGCGATACCAGTCGCTTTAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTc                                                                                                                                    >  1:1151650/1‑140 (MQ=255)

  tCTGCGTATTATTGGCGATACCAGTCGCTTTAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTcc                                                                                                                                   >  2:1499866/1‑140 (MQ=255)

   cTGCGTATTATTGGCGATACCAGTCGCTTTAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCa                                                                                                                                  <  1:1182826/140‑1 (MQ=255)

    tGCGTATTATTGGCGATACCAGTCGCTTTAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAg                                                                                                                                 >  1:810052/1‑140 (MQ=255)

    tGCGTATTATTGGCGATACCAGTCGCTTTAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAg                                                                                                                                 >  2:1267909/1‑140 (MQ=255)

         attattGGCGATACCAGTCGCTTTAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGt                                                                                                                            <  1:1569662/140‑1 (MQ=255)

             ttGGCGATACCAGTCGCTTTAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAgg                                                                                                                        >  1:1546802/1‑140 (MQ=255)

                gCGATACCAGTCGCTTTAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTcc                                                                                                                                   <  2:2351636/126‑1 (MQ=255)

                gCGATACCAGTCGCTTTAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCaa                                                                                                                     >  2:415473/1‑140 (MQ=255)

                gCGATACCAGTCGCTTTAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCaa                                                                                                                     >  2:1625795/1‑140 (MQ=255)

                  gATACCAGTCGCTTTAACTCGCGTTTGCAAGGACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGGTATGGTCCAGGGAGTCAGGCAACt                                                                                                                   <  1:2011611/140‑1 (MQ=255)

                          tCGCTTTAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGaaa                                                                                                           >  1:1006705/1‑140 (MQ=255)

                            gCTTTAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGaa                                                                                                            >  2:510211/1‑137 (MQ=255)

                               ttAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTg                                                                                                      <  1:2178990/140‑1 (MQ=255)

                                 aaCTCGCGTTTGCAAGAACGTATTCGTAAATCTGTAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTgca                                                                                                    <  2:2000932/140‑1 (MQ=255)

                                    tCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTgcagca                                                                                                 >  1:2408709/1‑140 (MQ=255)

                                      gcgTTTGCAAGAACGTATTCGTAAATCT‑‑AGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGa                                                                                             <  2:1089722/140‑1 (MQ=255)

                                        gTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTgcag                                                                                                   <  2:1844347/134‑1 (MQ=255)

                                        gTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGa                                                                                             <  1:1045327/140‑1 (MQ=255)

                                        gTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGa                                                                                             <  2:1683225/140‑1 (MQ=255)

                                        gTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGa                                                                                             <  2:810052/140‑1 (MQ=255)

                                        gTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGa                                                                                             >  1:1627676/1‑140 (MQ=255)

                                        gTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGa                                                                                             >  1:1204964/1‑140 (MQ=255)

                                           tGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAAc                                                                                          >  1:1812289/1‑140 (MQ=255)

                                                gAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCa                                                                                     <  2:1604983/140‑1 (MQ=255)

                                                  aCGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAAc                                                                                   <  1:738658/140‑1 (MQ=255)

                                                     tATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACcag                                                                                <  1:496880/140‑1 (MQ=255)

                                                      aTTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCaa                                                                                    >  1:403271/1‑135 (MQ=255)

                                                      aTTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCaa                                                                                    <  2:403271/135‑1 (MQ=255)

                                                      aTTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTG‑AAAGGTGCAGCAAGGAAACCTGCAACcagat                                                                              <  1:1841523/140‑1 (MQ=255)

                                                       ttCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACcagat                                                                              <  1:1899992/140‑1 (MQ=255)

                                                       ttCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACcagat                                                                              <  2:556404/140‑1 (MQ=255)

                                                       ttCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACcagat                                                                              <  2:85625/140‑1 (MQ=255)

                                                         cGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACcagatca                                                                            <  2:1204964/140‑1 (MQ=255)

                                                           tAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACcagatcaga                                                                          <  2:2203849/140‑1 (MQ=255)

                                                           tAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACcagatcaga                                                                          <  2:1118278/140‑1 (MQ=255)

                                                           tAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACcagatcaga                                                                          <  1:145752/140‑1 (MQ=255)

                                                             aaTCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCagata                                                                        >  1:686824/1‑140 (MQ=255)

                                                                 tGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATg                                                                    >  2:1974564/1‑140 (MQ=255)

                                                                  gAAGCGCTAACAGTCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGa                                                                   >  1:1480730/1‑140 (MQ=255)

                                                                    aGCGCTAACAGTCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAag                                                                 <  2:1480730/140‑1 (MQ=255)

                                                                    aGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAag                                                                 <  2:493938/140‑1 (MQ=255)

                                                                     gcgcTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAaga                                                                <  1:1625795/140‑1 (MQ=255)

                                                                     gcgcTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAaga                                                                <  2:1688773/140‑1 (MQ=255)

                                                                        cTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGAt                                                             >  1:2276220/1‑140 (MQ=255)

                                                                        cTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGAt                                                             >  2:665632/1‑140 (MQ=255)

                                                                          aaCAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACcagatcaga                                                                          <  1:1447295/125‑1 (MQ=255)

                                                                          aaCAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGc                                                           >  1:1357817/1‑140 (MQ=255)

                                                                                cGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAAcc                                                     >  2:1528616/1‑140 (MQ=255)

                                                                                  ggAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAg                                                   <  2:670171/140‑1 (MQ=255)

                                                                                  ggAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAg                                                   <  1:1297337/140‑1 (MQ=255)

                                                                                   gAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGc                                                  <  2:1777208/140‑1 (MQ=255)

                                                                                   gAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGc                                                  <  1:1974564/140‑1 (MQ=255)

                                                                                   gAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGc                                                  <  2:251213/140‑1 (MQ=255)

                                                                                     aTACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCAt                                                <  2:2408709/140‑1 (MQ=255)

                                                                                       aCCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGt                                              <  1:665632/140‑1 (MQ=255)

                                                                                       aCCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGt                                              <  1:1117115/140‑1 (MQ=255)

                                                                                         cGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGc                                                  >  1:41799/1‑134 (MQ=255)

                                                                                         cGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCt                                            >  1:221024/1‑140 (MQ=255)

                                                                                         cGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCt                                            >  1:494577/1‑140 (MQ=255)

                                                                                          ggTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTg                                           <  2:2250283/140‑1 (MQ=255)

                                                                                          ggTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTg                                           <  2:1812289/140‑1 (MQ=255)

                                                                                          ggTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTg                                           >  2:693595/1‑140 (MQ=255)

                                                                                           gTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGt                                          >  1:1666948/1‑140 (MQ=255)

                                                                                           gTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGt                                          >  2:782202/1‑140 (MQ=255)

                                                                                            tCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTa                                         >  1:95606/1‑140 (MQ=255)

                                                                                             cTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTAt                                        >  1:2140953/1‑140 (MQ=255)

                                                                                              tGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATg                                       >  2:1448004/1‑140 (MQ=255)

                                                                                               gACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGc                                      <  1:1528616/140‑1 (MQ=255)

                                                                                                    tGAATATTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGaa                                 <  1:1690292/140‑1 (MQ=255)

                                                                                                        tatTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTgg                             <  2:648280/140‑1 (MQ=255)

                                                                                                        tatTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTgg                             <  1:782202/140‑1 (MQ=255)

                                                                                                        tatTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTgg                             <  2:1152153/140‑1 (MQ=255)

                                                                                                        tatTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAAAGATGCTAAACCAGCATGTCTGTATGCATGAACTgg                             <  1:373662/140‑1 (MQ=255)

                                                                                                         atTGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGc                            <  1:969861/140‑1 (MQ=255)

                                                                                                          ttGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGcc                           <  1:238841/140‑1 (MQ=255)

                                                                                                          ttGCAGCGAACTACGGTGGACGATGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGcc                           >  1:1819697/1‑140 (MQ=255)

                                                                                                           tGCGGCGAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAACATGTCTGTATGCATGAACTGGccc                          >  1:779418/1‑140 (MQ=255)

                                                                                                             cggcgAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCt                        <  2:95606/140‑1 (MQ=255)

                                                                                                              ggcgAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTg                       <  2:1666948/140‑1 (MQ=255)

                                                                                                               gcgAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGt                      <  2:2276220/140‑1 (MQ=255)

                                                                                                                cgAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTa                     >  2:1875990/1‑140 (MQ=255)

                                                                                                                cgAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTa                     >  1:2122841/1‑140 (MQ=255)

                                                                                                                 gAACTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAg                    <  1:342179/140‑1 (MQ=255)

                                                                                                                    cTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGAtt                 <  2:773129/140‑1 (MQ=255)

                                                                                                                    cTACGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGAtt                 <  1:2196083/140‑1 (MQ=255)

                                                                                                                      aCGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTa               <  2:984435/140‑1 (MQ=255)

                                                                                                                      aCGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTa               <  2:2152269/140‑1 (MQ=255)

                                                                                                                      aCGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTa               <  2:1357817/140‑1 (MQ=255)

                                                                                                                      aCGGTGGACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGATGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTa               <  2:1093451/140‑1 (MQ=255)

                                                                                                                            gACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAATCCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGAt                  <  2:2092780/131‑1 (MQ=255)

                                                                                                                            gACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTa               <  1:1322978/134‑1 (MQ=255)

                                                                                                                            gACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTa               <  1:1743611/134‑1 (MQ=255)

                                                                                                                            gACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTa               >  2:1743611/1‑134 (MQ=255)

                                                                                                                            gACGTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTa               >  2:1322978/1‑134 (MQ=255)

                                                                                                                               gTTGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTAgg      >  2:9126/1‑140 (MQ=255)

                                                                                                                                 tGGGATATGGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTAGGAc    >  2:338630/1‑140 (MQ=255)

CGTCTGCGTATTATTGGCGATACCAGTCGCTTTAACTCGCGTTTGCAAGAACGTATTCGTAAATCTGAAGCGCTAACAGCCGGGAATACCGGTCTGACGCTGAATATTGCGGCGAACTACGGTGGACGTTGGGATATAGTCCAGGGAGTCAGGCAACTGGCTGAAAAGGTGCAGCAAGGAAACCTGCAACCAGATCAGATAGATGAAGAGATGCTAAACCAGCATGTCTGTATGCATGAACTGGCCCCTGTAGATTTAGTAATTAGGACTG  >  NC_000913/195218‑195488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A