Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 202,994 A→G V145V (GTA→GTG)  lpxA → UDP‑N‑acetylglucosamine acyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913202,9940AG100.0% 357.7 / NA 102V145V (GTA→GTG) lpxAUDP‑N‑acetylglucosamine acyltransferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (41/61);  total (41/61)

Only 100 of 121 total aligned reads displayed.

CGTGGCACAGTCCAGGGCGGTGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTATCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTCCCTCCTTATGTCATTGCGCAGGGT  >  NC_000913/202857‑203126
                                                                                                                                         |                                                                                                                                    
cGTGGCACAGTCCAGGGCGGTGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTc                                                                                                                                    >  2:1051609/1‑140 (MQ=255)
   ggCACAGTCCAGGGCGGTGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGt                                                                                                                                 >  1:849589/1‑140 (MQ=255)
    gCACAGTCCAGGGCGGTGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGtt                                                                                                                                <  2:1319987/140‑1 (MQ=255)
     cacaGTCCAGGGCGGTGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTg                                                                                                                               <  1:1686834/140‑1 (MQ=255)
     cacaGTCCAGGGCGGTGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTg                                                                                                                               >  2:1535431/1‑140 (MQ=255)
         gTCCAGGGCGGTGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTgacga                                                                                                                           <  1:1051609/140‑1 (MQ=255)
          tCCAGGGCGGTGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTgacgac                                                                                                                          >  2:907440/1‑140 (MQ=255)
            cAGGGCGGTGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACtt                                                                                                                        >  1:1621597/1‑140 (MQ=255)
                    tGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACTGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGatca                                                                                                                >  1:264195/1‑140 (MQ=255)
                    tGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGatca                                                                                                                >  1:912178/1‑140 (MQ=255)
                    tGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGatca                                                                                                                >  1:1113744/1‑140 (MQ=255)
                    tGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGatca                                                                                                                >  1:839124/1‑140 (MQ=255)
                    tGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGatca                                                                                                                >  1:1530346/1‑140 (MQ=255)
                    tGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGatca                                                                                                                >  2:1380207/1‑140 (MQ=255)
                    tGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACCTCGCGatca                                                                                                                >  2:1234340/1‑140 (MQ=255)
                    tGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGGCACGTGTCGGGTGACGACTTCCGGatcc                                                                                                                >  2:353856/1‑139 (MQ=255)
                    tGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGGCACGGGGCGGTTGGCGGCTTCGCGatca                                                                                                                >  2:605627/1‑140 (MQ=255)
                           aCGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATcggcgg                                                                                                         <  2:1644563/140‑1 (MQ=255)
                           aCGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATcggcgg                                                                                                         >  1:355208/1‑140 (MQ=255)
                                 gTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGAc                                                                                                   <  2:355208/140‑1 (MQ=255)
                                   gggCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCg                                                                                                 <  2:1530346/140‑1 (MQ=255)
                                      cAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCATCAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAg                                                                                              <  1:1495819/140‑1 (MQ=255)
                                         cGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTATATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTcc                                                                                           >  2:1594743/1‑140 (MQ=255)
                                           aCAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCAt                                                                                         >  2:577053/1‑140 (MQ=255)
                                           aCAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCAt                                                                                         <  1:142331/140‑1 (MQ=255)
                                           aCAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCAt                                                                                         >  2:723518/1‑140 (MQ=255)
                                           aCAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGGTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCAt                                                                                         >  2:499115/1‑140 (MQ=255)
                                           aCAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGCTGACGACTTCCCGATCATCGGGGGCATGACCGCAGTCCAt                                                                                         >  2:1414855/1‑140 (MQ=255)
                                              aCTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAg                                                                                      >  1:1468931/1‑140 (MQ=255)
                                                 tACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTc                                                                                   <  2:1113744/140‑1 (MQ=255)
                                                 tACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTc                                                                                   <  1:907440/140‑1 (MQ=255)
                                                   cTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTg                                                                                 <  2:1000805/140‑1 (MQ=255)
                                                        gatCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGcatca                                                                            <  2:1217407/140‑1 (MQ=255)
                                                             aCGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTggg                                                                       >  1:72697/1‑139 (MQ=255)
                                                             aCGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGt                                                                       <  1:605627/140‑1 (MQ=255)
                                                              cgcgCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTg                                                                      >  1:613144/1‑140 (MQ=255)
                                                              cgcgCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTg                                                                      >  1:122098/1‑140 (MQ=255)
                                                               gcgcAAATTGCGCGCGATTGTACGGTAGGTAACCGATGTATTCTCGCCAACAACACAACGCTGGGGGGTCACGTGTCGGTTGACGACTTCGGGATCATCGGCGGCATGACCGCAGTCCTTCAGTTCTGCATCATTGGTgc                                                                     <  2:1180208/140‑1 (MQ=255)
                                                                cgcACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTgcg                                                                    <  2:1491661/140‑1 (MQ=255)
                                                                cgcACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTgcg                                                                    <  1:1168467/140‑1 (MQ=255)
                                                                cgcACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTgcg                                                                    <  2:849589/140‑1 (MQ=255)
                                                                  cacaTTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCa                                                                  >  1:899067/1‑140 (MQ=255)
                                                                     aTTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGGGCGCACgg                                                               >  1:956215/1‑139 (MQ=255)
                                                                      ttGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGGTGACCACTTCGCGATCACCGGCGGCCTCACCGCGGTGCCTCAAGTCTGCCTCATTGGTGCGCCCGTg                                                              >  2:499916/1‑140 (MQ=255)
                                                                       tGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGa                                                             <  1:1583694/140‑1 (MQ=255)
                                                                        gcgcACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACg                                                                >  2:715758/1‑136 (MQ=255)
                                                                        gcgcACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACg                                                                <  1:715758/136‑1 (MQ=255)
                                                                         cgcACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATg                                                           >  1:565875/1‑140 (MQ=255)
                                                                         cgcACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGGCACGTGTCGGGTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTTGTGCGCACggggtg                                                           >  2:1015990/1‑135 (MQ=255)
                                                                           cACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGt                                                         >  1:942137/1‑140 (MQ=255)
                                                                           cACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGt                                                         >  2:941464/1‑140 (MQ=255)
                                                                                 tGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGGCACGTGTCGGTTGACGACTTCCCGATCCTCGGGGGGCTGACCCCAGTCCATCAGGTCTGCTTCAATGGTGCGCACGTGATGGTTggcgg                                                   >  2:217547/1‑140 (MQ=255)
                                                                                    aCGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGgctg                                                <  2:839124/140‑1 (MQ=255)
                                                                                          ggtaACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCgg                                          >  2:873731/1‑140 (MQ=255)
                                                                                          ggtaACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCgg                                          >  2:1275483/1‑140 (MQ=255)
                                                                                          ggtaACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCgg                                          >  2:349173/1‑140 (MQ=255)
                                                                                          ggtaACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCgg                                          >  2:966616/1‑140 (MQ=255)
                                                                                          ggtaACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCgg                                          <  1:1222650/140‑1 (MQ=255)
                                                                                          ggtaACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCgg                                          >  1:359382/1‑140 (MQ=255)
                                                                                          ggtaACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGGGGTGGTTGGCGGCTGCTCCgg                                          >  2:1680112/1‑140 (MQ=255)
                                                                                          ggtaACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGGGCGCACGTGATGGTTGGCGGCTGCTCCgg                                          >  1:1129658/1‑140 (MQ=255)
                                                                                          ggtaACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGCCACGTGTCGGGTGACGACCTCGCGAACATCGGCGGCATCACCCCAGTCCCTCCGTTCTGCATCCTTGGTGCGCACGCGATGGTTGGCGGCCGCTCCgg                                          >  2:1059298/1‑140 (MQ=255)
                                                                                           gtaACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGgt                                         <  2:613144/140‑1 (MQ=255)
                                                                                           gtaACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGgt                                         <  2:751964/140‑1 (MQ=255)
                                                                                             aaCCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTTGTGCGCACGTGATGGGTGGCGGCTGCTcccgggt                                       >  2:1539398/1‑135 (MQ=255)
                                                                                             aaCCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTggcgg                                                   >  2:1283977/1‑128 (MQ=255)
                                                                                             aaCCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTggcgg                                                   <  1:1283977/128‑1 (MQ=255)
                                                                                             aaCCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGgtgt                                       <  1:918678/140‑1 (MQ=255)
                                                                                             aaCCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGgtgt                                       <  1:499916/140‑1 (MQ=255)
                                                                                                  cTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTTGCGATCATCCGCGGCATGACCCCCGGACCTCAGTTCTTCCTCATTGGTGGGCCCGGGATGGTTGGGGGGTGCTCCCGGGTGgggc                                  >  2:1712448/1‑140 (MQ=255)
                                                                                                   tGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCa                                 <  2:264195/140‑1 (MQ=255)
                                                                                                     tATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAgg                               >  2:947950/1‑140 (MQ=255)
                                                                                                      aTTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGa                              <  1:952298/140‑1 (MQ=255)
                                                                                                      aTTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGa                              <  1:1275483/140‑1 (MQ=255)
                                                                                                      aTTCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGa                              <  1:947950/140‑1 (MQ=255)
                                                                                                       ttCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGAc                             <  1:577053/140‑1 (MQ=255)
                                                                                                       ttCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGAc                             <  1:723518/140‑1 (MQ=255)
                                                                                                       ttCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGAc                             <  1:812316/140‑1 (MQ=255)
                                                                                                       ttCTCGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGAc                             <  1:1414855/140‑1 (MQ=255)
                                                                                                         ctcGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGt                           <  1:1690378/140‑1 (MQ=255)
                                                                                                          tcGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGGTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTTGTGCGCACGTGATGGGTGGCGGCTGCTCCGGTGGGGCGCAGGACGTc                          >  2:812316/1‑140 (MQ=255)
                                                                                                           cGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTcc                         <  1:353856/140‑1 (MQ=255)
                                                                                                           cGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTcc                         <  1:1534616/140‑1 (MQ=255)
                                                                                                           cGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTcc                         <  1:1535431/140‑1 (MQ=255)
                                                                                                           cGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTcc                         <  1:349173/140‑1 (MQ=255)
                                                                                                           cGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTcc                         <  1:941464/140‑1 (MQ=255)
                                                                                                           cGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTcc                         <  1:873731/140‑1 (MQ=255)
                                                                                                           cGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTcc                         <  1:825612/140‑1 (MQ=255)
                                                                                                           cGCCAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTcc                         <  1:747997/140‑1 (MQ=255)
                                                                                                            gCCAACAACGCAACGCTGGCGGGTCACGTTTCGGGTGGCGACCTCGCGATCATCGGCGGCATGACCGCAGGCCCTCCGTTCTGCATCATTGGTGCGCACCGGGTGGTTGGCGGCTGCTCCCGGGTGGGGCAGGGCGTccc                        >  2:1690378/1‑140 (MQ=255)
                                                                                                             ccAACAACGCAACGCTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTCcct                       <  1:217547/140‑1 (MQ=255)
                                                                                                                  aacgcaacgcTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTCCCTCCTTa                  <  2:942137/140‑1 (MQ=255)
                                                                                                                       aacgcTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTCCCTCCTTATGTCa             <  1:1015990/140‑1 (MQ=255)
                                                                                                                          gcTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTCCCTCCTTATGTCATTg          >  1:702220/1‑140 (MQ=255)
                                                                                                                           cTGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTCCCTCCTTATGTCATTgc         <  2:122098/140‑1 (MQ=255)
                                                                                                                            tGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTCCCTCCTTATGTCATTgcg        >  1:1351941/1‑140 (MQ=255)
                                                                                                                            tGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTCCCTCCTTATGTCATTgcg        <  2:899067/140‑1 (MQ=255)
                                                                                                                            tGGCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTCCCTCCTTATGTCATTgcg        <  2:702220/140‑1 (MQ=255)
                                                                                                                             ggCGGGTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTCCCTCCTTATGTCATTgcgc       <  1:1380207/140‑1 (MQ=255)
                                                                                                                                  gTCACGTGTCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTCCCTCCTTATGTCATTGCGCAGGGt  <  1:1059298/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                    
CGTGGCACAGTCCAGGGCGGTGGATTGACGAAGGTGGGCAGCGACAACTTACTGATGATCAACGCGCACATTGCGCACGATTGTACGGTAGGTAACCGCTGTATTCTCGCCAACAACGCAACGCTGGCGGGTCACGTATCGGTTGACGACTTCGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTCCCTCCTTATGTCATTGCGCAGGGT  >  NC_000913/202857‑203126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A